Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011633

Physical Location & Seq

Genomic Coordinates Forward (+)

13300210 .. 13304174

Gene Structure 3965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGATTCGGTGTTCCTCATTCGCCATGGACTTATTGGCTTGGAGAGGATTGCTTTACACAGTGTTCATTCTGCATTTCGTGTTTCTCTGCCAGCTTCTCCTTCTTCAACCTCTCGTTTCTGCTATAGATGGCAAACCTGGTAATGCGGCTGAGTTGTTTGAAAGGGTTTCACAGAGTGTAAAGGTGAAGAGATATAGCGAGGCACTTAATGATCTTAATGCTGCCATAGAGGCAGATCCAACACTTTCAGAAGCATATTATCATCGTGCATCTGTTCTTCGCCAGATATGCAGATATGAGGAATCAGAGAAGAGCTACAAAAAGTTTTTGGAGTTGAAACCCCGAGATTCAGTTGCAGAGAAGGAGCTTTCTCAATTGAATCAGGCTAAGAGTGCTCTGGATACTGCTTTGACTCTCTTTGAATCAAGCGACTTTGCAAAATCTTTGGAATATGTCGAAAAAGTTGTTCTTGTTTTCTCTCCAGCATGTTCAAAGGCCAAACTCCTGAAGGTGAAATTGTTGTTAGCATCTAAAGACTATTCTAGTGTCATTGCGGAGGCTGGGTTCATTCTCAAAGAAGATGAAGATAATCTGGATGCATTATTACTTCGTGGCCGTGCTTACTATTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATGGTGAACTGAAGAAAGCGTACTTTGGATTGAAGAACTTACTCAAAAAGACTAAAAGTGCCGAAGATAATGAAAAGAAGGGCAGGCTGCGAGTTGCAGTTGAGGATTTTAAGGCAGCCCTAGCAATGGACCCTAATCATCTTGCATATAATGTACATCTTCATCTTGGCTTGTGTAAACTCTTGGTCAAACTTGGCAGGGGAAAGGATGCTCTAAGTAGTTGCAATGAAGCACTTAATATTGATGGGGAGCTTCTTGAAGCCTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCCATGGAAGATCTAAAATCAGCAGCTCAAAAATCACCTCAGGATATGAATATTCGAGAAACATACATGAGAGCTGAGAAAGCCTTAAAGATGAGTAAACGCAAAGACTGGTACAAGATTTTGGGAGTTTCAAAGACTTCGAGTGTATCTGAGATTAAGCGTGCCTACAAGAAACTTGCTTTGCAGTGGCATCCAGATAAAAACGTTGAAAATAGAGAAGAAGCAGAGGAGAAATTTCGAGAAATTGCTGCTGCATACGAGGTTCTTGGTGATGAAGAAAAACGTACCAAGTATGACAGAGGTGAAGATATTGAAGAGATGGGGATGGGTGGTGGGGGTGGTGGTTTTAACCCTTTCCATGGCGGCGGTGGACAGCAATATACTTTCACTTTCGAAGGTGGCTTTCCTGGCGGTGGTGGTGGATTTGATTTCCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

480

Amino Acids

53.97

Weight (kDa)

6.42

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	370 - 433	5.7e-27	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38910
fragaria_vesca	FvH4_6g21020
malus_domestica	MD12G1046000.v1.1 MD14G1044700.v1.1
prunus_persica	Prupe.7G089600_v2.0.a1 Prupe.7G089600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477401
rosa_laevigata	RLG00000023725
rosa_multiflora	Rmu_ssc0000341.1_g000023
rosa_roxburghii	Rroxscaffold_6G00404200 Rroxscaffold_6G00404680 Rroxscaffold_6G00404690
rosa_rugosa	Rorug03G0160200 Rorug03G0160300 Rorug03G0160400
rosa_samantha	Rh3AG210700 Rh3CG237800 Rh3DG237500
rosa_wichuraiana	Rw3G019090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	6 cut(s)	146, 554, 676, 1365, 1368, 1413
AclI	AACGTT	1 cut(s)	1206
AclWI	GGATC	2 cut(s)	230, 677
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	1235
AcuI	CTGAAG	2 cut(s)	527, 722
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	4 cut(s)	713, 846, 1115, 1288
AfiI	CCNNNNNNNGG	4 cut(s)	692, 817, 1361, 1415
AjnI	CCWGG	2 cut(s)	136, 1408
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	8 cut(s)	94, 315, 367, 635, 943, 974, 1028, 1076
AluI	AGCT	8 cut(s)	94, 315, 367, 635, 943, 974, 1028, 1076
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	230, 677
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	495, 613
ApeKI	GCWGC	6 cut(s)	221, 778, 806, 1025, 1250, 1253
ApoI	RAATTY	1 cut(s)	1235
AspS9I	GGNCC	1 cut(s)	820
AsuHPI	GGTGA	7 cut(s)	196, 523, 707, 980, 1029, 1283, 1316
AsuII	TTCGAA	1 cut(s)	1395
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	1041
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	6 cut(s)	208, 765, 818, 1037, 1237, 1240
BccI	CCATC	4 cut(s)	122, 929, 1315, 1321
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	2 cut(s)	138, 1410
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	3 cut(s)	543, 680, 812
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	8 cut(s)	147, 222, 779, 807, 1026, 1251, 1254, 1366
BlsI	GCNGC	8 cut(s)	148, 223, 780, 808, 1027, 1252, 1255, 1367
Bme1390I	CCNGG	2 cut(s)	138, 1410
Bme18I	GGWCC	1 cut(s)	820
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	820
BmiI	GGNNCC	2 cut(s)	822, 1003
BmrFI	CCNGG	2 cut(s)	138, 1410
BmsI	GCATC	5 cut(s)	278, 536, 586, 889, 1201
BpmI	CTGGAG	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	1395
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	24, 1005, 1360
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	4 cut(s)	692, 817, 1361, 1415
Bse1I	ACTGG	2 cut(s)	1115, 1435
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	3 cut(s)	549, 822, 922
BseBI	CCWGG	2 cut(s)	138, 1410
BseDI	CCNNGG	3 cut(s)	24, 1005, 1360
BseGI	GGATG	4 cut(s)	601, 904, 1192, 1332
BseLI	CCNNNNNNNGG	4 cut(s)	692, 817, 1361, 1415
BseMI	GCAATG	3 cut(s)	549, 822, 922
BseMII	CTCAG	4 cut(s)	141, 1055, 1068, 1143
BseNI	ACTGG	2 cut(s)	1115, 1435
BseRI	GAGGAG	1 cut(s)	1244
BseXI	GCAGC	6 cut(s)	208, 765, 818, 1037, 1237, 1240
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	2 cut(s)	497, 615
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	342
BslI	CCNNNNNNNGG	4 cut(s)	692, 817, 1361, 1415
BsmAI	GTCTC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	497, 615
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	1395
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	211, 235, 637, 682, 1012
Bsp19I	CCATGG	3 cut(s)	24, 1005, 1360
BspACI	CCGC	6 cut(s)	146, 554, 676, 1365, 1368, 1413
BspANI	GGCC	2 cut(s)	497, 615
BspCNI	CTCAG	4 cut(s)	142, 1054, 1069, 1144
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	822, 1003
BspPI	GGATC	2 cut(s)	230, 677
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	1395
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	549, 822, 922
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	2 cut(s)	1115, 1435
BssECI	CCNNGG	3 cut(s)	24, 1005, 1360
BssMI	GATC	5 cut(s)	211, 235, 637, 682, 1012
BssT1I	CCWWGG	3 cut(s)	24, 1005, 1360
Bst2UI	CCWGG	2 cut(s)	138, 1410
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	3 cut(s)	182, 305, 1311
BstAUI	TGTACA	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	1395
BstC8I	GCNNGC	3 cut(s)	92, 776, 1164
BstDEI	CTNAG	7 cut(s)	150, 387, 905, 955, 1041, 1077, 1152
BstDSI	CCRYGG	3 cut(s)	24, 1005, 1360
BstF5I	GGATG	4 cut(s)	601, 904, 1192, 1332
BstKTI	GATC	5 cut(s)	214, 238, 640, 685, 1015
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	5 cut(s)	211, 235, 637, 682, 1012
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 288, 392, 812, 1082, 1410
BstNI	CCWGG	2 cut(s)	138, 1410
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	136, 1408
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	6 cut(s)	208, 765, 818, 1037, 1237, 1240
BstX2I	RGATCY	3 cut(s)	235, 682, 1012
BstYI	RGATCY	3 cut(s)	235, 682, 1012
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	497, 615
BtgI	CCRYGG	3 cut(s)	24, 1005, 1360
BtsCI	GGATG	4 cut(s)	601, 904, 1192, 1332
BtsI	GCAGTG	1 cut(s)	1193
BtsIMutI	CAGTG	2 cut(s)	66, 1193
Cac8I	GCNNGC	3 cut(s)	92, 776, 1164
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	820
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	712, 845, 1114, 1287
CviAII	CATG	7 cut(s)	25, 486, 641, 692, 1006, 1069, 1361
CviQI	GTAC	4 cut(s)	712, 845, 1114, 1287
DdeI	CTNAG	7 cut(s)	150, 387, 905, 955, 1041, 1077, 1152
DpnI	GATC	5 cut(s)	213, 237, 639, 684, 1014
DpnII	GATC	5 cut(s)	211, 235, 637, 682, 1012
DraIII	CACNNNGTG	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	3 cut(s)	182, 305, 1311
EarI	CTCTTC	3 cut(s)	182, 305, 1311
EciI	GGCGGA	1 cut(s)	665
Eco130I	CCWWGG	3 cut(s)	24, 1005, 1360
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	2 cut(s)	527, 722
Eco81I	CCTNAGG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	136, 1408
EcoT14I	CCWWGG	3 cut(s)	24, 1005, 1360
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	24, 1005, 1360
FaeI	CATG	7 cut(s)	28, 489, 644, 695, 1009, 1072, 1364
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 963, 995
FatI	CATG	7 cut(s)	24, 485, 640, 691, 1005, 1068, 1360
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	8 cut(s)	147, 222, 779, 807, 1026, 1251, 1254, 1366
FokI	GGATG	4 cut(s)	608, 911, 1179, 1339
Fsp4HI	GCNGC	8 cut(s)	147, 222, 779, 807, 1026, 1251, 1254, 1366
FspBI	CTAG	3 cut(s)	543, 680, 812
GluI	GCNGC	8 cut(s)	147, 222, 779, 807, 1026, 1251, 1254, 1366
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	497, 615
Hin1II	CATG	7 cut(s)	28, 489, 644, 695, 1009, 1072, 1364
HinfI	GANTC	6 cut(s)	4, 302, 347, 379, 412, 422
HphI	GGTGA	7 cut(s)	196, 523, 707, 980, 1029, 1283, 1316
Hpy166II	GTNNAC	4 cut(s)	698, 869, 1100, 1373
Hpy188I	TCNGA	5 cut(s)	250, 307, 963, 984, 1153
Hpy8I	GTNNAC	4 cut(s)	698, 869, 1100, 1373
HpyAV	CCTTC	5 cut(s)	110, 355, 502, 763, 1391
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	1206, 1285
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 288, 392, 812, 1082, 1410
HpyF3I	CTNAG	7 cut(s)	150, 387, 905, 955, 1041, 1077, 1152
HpySE526I	ACGT	2 cut(s)	1206, 1285
Hsp92II	CATG	7 cut(s)	28, 489, 644, 695, 1009, 1072, 1364
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	211, 235, 637, 682, 1012
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	3 cut(s)	364, 940, 1001
Lsp1109I	GCAGC	6 cut(s)	208, 765, 818, 1037, 1237, 1240
LweI	GCATC	5 cut(s)	278, 536, 586, 889, 1201
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	3 cut(s)	543, 680, 812
MaeII	ACGT	2 cut(s)	1206, 1285
MalI	GATC	5 cut(s)	213, 237, 639, 684, 1014
MboI	GATC	5 cut(s)	211, 235, 637, 682, 1012
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	3 cut(s)	235, 682, 1012
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	4 cut(s)	374, 515, 1235, 1245
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	8 cut(s)	207, 216, 801, 927, 1088, 1158, 1350, 1441
MspR9I	CCNGG	2 cut(s)	138, 1410
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	138, 1410
MwoI	GCNNNNNNNGC	6 cut(s)	230, 288, 392, 812, 1082, 1410
NcoI	CCATGG	3 cut(s)	24, 1005, 1360
NdeII	GATC	5 cut(s)	211, 235, 637, 682, 1012
NlaIII	CATG	7 cut(s)	28, 489, 644, 695, 1009, 1072, 1364
NlaIV	GGNNCC	2 cut(s)	822, 1003
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	1395
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	5 cut(s)	4, 302, 347, 379, 422
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	8 cut(s)	148, 223, 780, 808, 1027, 1252, 1255, 1367
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp1406I	AACGTT	1 cut(s)	1206
Psp6I	CCWGG	2 cut(s)	136, 1408
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	136, 1408
PspN4I	GGNNCC	2 cut(s)	822, 1003
PspPI	GGNCC	1 cut(s)	820
PsuI	RGATCY	3 cut(s)	235, 682, 1012
RsaI	GTAC	4 cut(s)	713, 846, 1115, 1288
RsaNI	GTAC	4 cut(s)	712, 845, 1114, 1287
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	8 cut(s)	207, 216, 801, 927, 1088, 1158, 1350, 1441
SatI	GCNGC	8 cut(s)	147, 222, 779, 807, 1026, 1251, 1254, 1366
Sau3AI	GATC	5 cut(s)	211, 235, 637, 682, 1012
Sau96I	GGNCC	1 cut(s)	820
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	138, 1410
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	5 cut(s)	278, 536, 586, 889, 1201
SfcI	CTRYAG	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	1395
SinI	GGWCC	1 cut(s)	820
Sse9I	AATT	4 cut(s)	374, 515, 1235, 1245
SsiI	CCGC	6 cut(s)	146, 554, 676, 1365, 1368, 1413
SspI	AATATT	2 cut(s)	931, 1054
SspMI	CTAG	3 cut(s)	543, 680, 812
StyD4I	CCNGG	2 cut(s)	136, 1408
StyI	CCWWGG	3 cut(s)	24, 1005, 1360
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	1209, 1288
TaqI	TCGA	5 cut(s)	456, 1057, 1142, 1240, 1395
TasI	AATT	4 cut(s)	374, 515, 1235, 1245
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	2 cut(s)	149, 1368
TfiI	GAWTC	5 cut(s)	4, 302, 347, 379, 422
Tru1I	TTAA	8 cut(s)	207, 216, 801, 927, 1088, 1158, 1350, 1441
Tru9I	TTAA	8 cut(s)	207, 216, 801, 927, 1088, 1158, 1350, 1441
TscAI	CASTG	2 cut(s)	66, 1193
TseI	GCWGC	6 cut(s)	221, 778, 806, 1025, 1250, 1253
TspDTI	ATGAA	8 cut(s)	55, 556, 597, 777, 842, 933, 1064, 1290
TspRI	CASTG	2 cut(s)	66, 1193
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	820
XapI	RAATTY	1 cut(s)	1235
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	31, 1367
XspI	CTAG	3 cut(s)	543, 680, 812
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.