Rroxscaffold_7G00178150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018652
Physical Location & Seq
Reverse (-)
17891405 .. 17903701
12297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178150.1

Sequence Viewer

Length: 942 bp
ATGGGAGCTGCTGACCTGGACTTTGGTGCCAGGTGTGAATCCTACGTGGAGTATTATCTAATCCGTCCCCAGAGGGGGTTACGTGTCGCCGAACGGACCCCGGTTCGGTTTGTTGGCCATGCCGGCCACGCGGCTCTGTTAGGAGAGCGACGCTTATGTCGTTTCGACGGGTGCTTGGTGCTGAGAGCCGTTGGATTGCTTGGGCACAGACCGCTAAAACAATCTTACCAGATAAACCCCAATGAAGAAATTCCTACACAGACTACAGCGAAGGCTTGGAAGTTGACGAGGACTTTGAGGTGGAAATGGGGTTGGGCTTCGATTGGGGAGGCTTCGAGGCGCGGCGACTCCTCCTCCTTCACCGCTTTCCCGGAATTTGATGCGGGCACCGGATCGGATCTCGGGGATGAAATTGTTATGGGAACTTCGTCGACGGCCTTCGGTGGGTGGATAAAGATGGTCGACGATGGCATATCGGCGATCGAGAGGTTGATGGTGGGGATTGGTTCGGCATCGATGATGGCGAGCGACAATGGCGCAGCGGCGATCGGAGAGGTCGAGAGGTCGATGGTGGGGATTGGTTGGGCGTCGATGATGGCGGAGCGGCGATCGGAGTGGAGGTTGGAGAGGTCGATGGTGGGGATTAGTTGGGTGTCGGGTCGGGTCGTCGGTGAGGGGGATGGAGGAGAGACCCAAGTACGGAGAGAGAAATCGATTAAGAGAGTGGCCCGTAAATTAGAGGGTGATGGCACTTTGGTGGTGGCTAATGTGCAAGTGGAGGGTGAAGATTCTACTTTGATGGCTGCTGATGAGCTTATAGGAAATAAGGAGGTAAAGGTTGGTGAGGGCAAATTCACAAATGGTCGATCTCATTTGGACACTATCATATCAATCACCATCGTACATGAAACATTGAATTCAAAGAATCTCTTTTCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.08

Weight (kDa)

6.56

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018652)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007863 RLG00000028777
rosa_roxburghii Rroxscaffold_7G00177670 Rroxscaffold_7G00178150
rosa_rugosa Rorug05G0552600
rosa_samantha Rh1DG169200 Rh2DG630400 Rh6BG090300 Rh7CG411700 Rh7DG011600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 156
AccB1I GGYRCC 2 cut(s) 26, 386
AccBSI CCGCTC 1 cut(s) 604
AccI GTMKAC 2 cut(s) 431, 462
AccII CGCG 2 cut(s) 131, 342
AciI CCGC 8 cut(s) 131, 212, 342, 363, 383, 542, 599, 604
AclWI GGATC 2 cut(s) 400, 405
AcoI YGGCCR 2 cut(s) 115, 124
AcsI RAATTY 4 cut(s) 249, 374, 851, 916
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 2 cut(s) 699, 903
AfiI CCNNNNNNNGG 5 cut(s) 74, 75, 105, 444, 699
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 2 cut(s) 916, 921
AjnI CCWGG 2 cut(s) 15, 29
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 2 cut(s) 8, 814
AluI AGCT 2 cut(s) 8, 814
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 2 cut(s) 400, 405
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 4 cut(s) 115, 124, 435, 726
ApeKI GCWGC 3 cut(s) 8, 539, 803
ApoI RAATTY 4 cut(s) 249, 374, 851, 916
ArsI GACNNNNNNTTYG 3 cut(s) 37, 277, 309
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 2 cut(s) 342, 539
AspS9I GGNCC 2 cut(s) 96, 727
AsuC2I CCSGG 2 cut(s) 101, 371
AsuHPI GGTGA 6 cut(s) 352, 683, 755, 794, 854, 886
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 2 cut(s) 207, 389
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 2 cut(s) 26, 386
BbvI GCAGC 2 cut(s) 551, 790
BceAI ACGGC 2 cut(s) 173, 450
BciT130I CCWGG 2 cut(s) 17, 31
BcnI CCSGG 2 cut(s) 101, 371
BcoDI GTCTC 1 cut(s) 683
BfmI CTRYAG 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 7 cut(s) 9, 132, 343, 540, 543, 605, 804
BlsI GCNGC 7 cut(s) 10, 133, 344, 541, 544, 606, 805
Bme1390I CCNGG 4 cut(s) 17, 31, 101, 371
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 96, 727
BmiI GGNNCC 3 cut(s) 28, 98, 388
BmrFI CCNGG 4 cut(s) 17, 31, 101, 371
BmsI GCATC 2 cut(s) 370, 521
BpuMI CCSGG 2 cut(s) 101, 371
Bsa29I ATCGAT 2 cut(s) 515, 713
BsaAI YACGTR 2 cut(s) 46, 83
BsaHI GRCGYC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 605, 635
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 75, 105, 444, 699
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 2 cut(s) 17, 31
BseCI ATCGAT 2 cut(s) 515, 713
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 412, 685
BseLI CCNNNNNNNGG 5 cut(s) 74, 75, 105, 444, 699
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 3 cut(s) 340, 343, 699
BseSI GKGCMC 2 cut(s) 207, 389
BseXI GCAGC 2 cut(s) 551, 790
Bsh1236I CGCG 2 cut(s) 131, 342
Bsh1285I CGRYCG 3 cut(s) 483, 549, 611
BshFI GGCC 4 cut(s) 117, 126, 437, 728
BshNI GGYRCC 2 cut(s) 26, 386
BshVI ATCGAT 2 cut(s) 515, 713
BsiEI CGRYCG 3 cut(s) 483, 549, 611
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 101, 123, 371, 390
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 5 cut(s) 74, 75, 105, 444, 699
BsmAI GTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 4 cut(s) 117, 126, 437, 728
Bso31I GGTCTC 1 cut(s) 683
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 207, 389
Bsp143I GATC 6 cut(s) 392, 397, 480, 546, 608, 866
BspACI CCGC 8 cut(s) 131, 212, 342, 363, 383, 542, 599, 604
BspANI GGCC 4 cut(s) 117, 126, 437, 728
BspCNI CTCAG 1 cut(s) 174
BspDI ATCGAT 2 cut(s) 515, 713
BspFNI CGCG 2 cut(s) 131, 342
BspLI GGNNCC 3 cut(s) 28, 98, 388
BspPI GGATC 2 cut(s) 400, 405
BspT107I GGYRCC 2 cut(s) 26, 386
BspTNI GGTCTC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 604
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 392, 397, 480, 546, 608, 866
BssNI GRCGYC 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 17, 31
BstACI GRCGYC 1 cut(s) 587
BstBAI YACGTR 2 cut(s) 46, 83
BstC8I GCNNGC 3 cut(s) 124, 385, 526
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 412, 685
BstFNI CGCG 2 cut(s) 131, 342
BstHHI GCGC 2 cut(s) 342, 539
BstKTI GATC 6 cut(s) 395, 400, 483, 549, 611, 869
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 6 cut(s) 392, 397, 480, 546, 608, 866
BstMCI CGRYCG 3 cut(s) 483, 549, 611
BstMWI GCNNNNNNNGC 4 cut(s) 123, 128, 211, 534
BstNI CCWGG 2 cut(s) 17, 31
BstSCI CCNGG 4 cut(s) 15, 29, 99, 369
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 2 cut(s) 207, 389
BstUI CGCG 2 cut(s) 131, 342
BstV1I GCAGC 2 cut(s) 551, 790
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 2 cut(s) 515, 713
BsuRI GGCC 4 cut(s) 117, 126, 437, 728
BsuTUI ATCGAT 2 cut(s) 515, 713
BtsCI GGATG 2 cut(s) 412, 685
Cac8I GCNNGC 3 cut(s) 124, 385, 526
CfoI GCGC 2 cut(s) 342, 539
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 96, 727
ClaI ATCGAT 2 cut(s) 515, 713
CseI GACGC 2 cut(s) 159, 576
Csp6I GTAC 2 cut(s) 698, 902
CviAII CATG 2 cut(s) 119, 905
CviQI GTAC 2 cut(s) 698, 902
DdeI CTNAG 1 cut(s) 182
DpnI GATC 6 cut(s) 394, 399, 482, 548, 610, 868
DpnII GATC 6 cut(s) 392, 397, 480, 546, 608, 866
DrdI GACNNNNNNGTC 1 cut(s) 156
DseDI GACNNNNNNGTC 1 cut(s) 156
EaeI YGGCCR 2 cut(s) 115, 124
EciI GGCGGA 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 916
EcoRII CCWGG 2 cut(s) 15, 29
FaeI CATG 2 cut(s) 122, 908
FaiI YATR 8 cut(s) 120, 157, 419, 473, 818, 887, 906, 940
FalI AAGNNNNNCTT 1 cut(s) 914
FaqI GGGAC 1 cut(s) 51
FatI CATG 2 cut(s) 118, 904
FauI CCCGC 1 cut(s) 376
FblI GTMKAC 2 cut(s) 431, 462
Fnu4HI GCNGC 7 cut(s) 9, 132, 343, 540, 543, 605, 804
FokI GGATG 2 cut(s) 419, 692
Fsp4HI GCNGC 7 cut(s) 9, 132, 343, 540, 543, 605, 804
GlaI GCGC 2 cut(s) 341, 538
GluI GCNGC 7 cut(s) 9, 132, 343, 540, 543, 605, 804
HaeIII GGCC 4 cut(s) 117, 126, 437, 728
HapII CCGG 4 cut(s) 101, 123, 371, 390
HgaI GACGC 2 cut(s) 159, 576
HhaI GCGC 2 cut(s) 342, 539
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 2 cut(s) 122, 908
Hin6I GCGC 2 cut(s) 340, 537
HinP1I GCGC 2 cut(s) 340, 537
HincII GTYRAC 3 cut(s) 285, 432, 463
HindII GTYRAC 3 cut(s) 285, 432, 463
HinfI GANTC 4 cut(s) 38, 347, 788, 925
HpaII CCGG 4 cut(s) 101, 123, 371, 390
HphI GGTGA 6 cut(s) 352, 683, 755, 794, 854, 886
Hpy166II GTNNAC 3 cut(s) 285, 432, 463
Hpy188I TCNGA 3 cut(s) 397, 551, 613
Hpy188III TCNNGA 2 cut(s) 484, 559
Hpy8I GTNNAC 3 cut(s) 285, 432, 463
Hpy99I CGWCG 7 cut(s) 153, 170, 433, 436, 467, 592, 671
HpyAV CCTTC 3 cut(s) 265, 367, 448
HpyCH4IV ACGT 2 cut(s) 45, 82
HpyCH4V TGCA 1 cut(s) 772
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 128, 211, 534
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 2 cut(s) 45, 82
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 2 cut(s) 122, 908
HspAI GCGC 2 cut(s) 340, 537
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 6 cut(s) 392, 397, 480, 546, 608, 866
LmnI GCTCC 2 cut(s) 5, 601
Lsp1109I GCAGC 2 cut(s) 551, 790
LweI GCATC 2 cut(s) 370, 521
MaeII ACGT 2 cut(s) 45, 82
MaeIII GTNAC 1 cut(s) 78
MalI GATC 6 cut(s) 394, 399, 482, 548, 610, 868
MbiI CCGCTC 1 cut(s) 604
MboI GATC 6 cut(s) 392, 397, 480, 546, 608, 866
MboII GAAGA 2 cut(s) 257, 797
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 2 cut(s) 207, 389
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 6 cut(s) 249, 374, 411, 734, 851, 916
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 2 cut(s) 172, 603
Mox20I TGGCCA 1 cut(s) 117
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 4 cut(s) 101, 123, 371, 390
MspR9I CCNGG 4 cut(s) 17, 31, 101, 371
MvaI CCWGG 2 cut(s) 17, 31
MvnI CGCG 2 cut(s) 131, 342
MwoI GCNNNNNNNGC 4 cut(s) 123, 128, 211, 534
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 2 cut(s) 101, 371
NdeII GATC 6 cut(s) 392, 397, 480, 546, 608, 866
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 2 cut(s) 122, 908
NlaIV GGNNCC 3 cut(s) 28, 98, 388
OliI CACNNNNGTG 1 cut(s) 755
PcsI WCGNNNNNNNCGW 3 cut(s) 157, 521, 555
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 3 cut(s) 38, 788, 925
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 7 cut(s) 10, 133, 344, 541, 544, 606, 805
Ple19I CGATCG 3 cut(s) 483, 549, 611
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 2 cut(s) 46, 83
Psp6I CCWGG 2 cut(s) 15, 29
PspGI CCWGG 2 cut(s) 15, 29
PspN4I GGNNCC 3 cut(s) 28, 98, 388
PspPI GGNCC 2 cut(s) 96, 727
PsuI RGATCY 1 cut(s) 397
PvuI CGATCG 3 cut(s) 483, 549, 611
RsaI GTAC 2 cut(s) 699, 903
RsaNI GTAC 2 cut(s) 698, 902
RseI CAYNNNNRTG 1 cut(s) 755
SalI GTCGAC 2 cut(s) 430, 461
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 7 cut(s) 9, 132, 343, 540, 543, 605, 804
Sau3AI GATC 6 cut(s) 392, 397, 480, 546, 608, 866
Sau96I GGNCC 2 cut(s) 96, 727
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 4 cut(s) 17, 31, 101, 371
SduI GDGCHC 2 cut(s) 207, 389
SfaNI GCATC 2 cut(s) 370, 521
SfcI CTRYAG 1 cut(s) 264
SfiI GGCCNNNNNGGCC 1 cut(s) 123
SgrDI CGTCGACG 1 cut(s) 430
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 6 cut(s) 249, 374, 411, 734, 851, 916
SsiI CCGC 8 cut(s) 131, 212, 342, 363, 383, 542, 599, 604
StyD4I CCNGG 4 cut(s) 15, 29, 99, 369
TaiI ACGT 2 cut(s) 48, 85
TasI AATT 6 cut(s) 249, 374, 411, 734, 851, 916
TauI GCSGC 4 cut(s) 134, 345, 545, 607
TfiI GAWTC 3 cut(s) 38, 788, 925
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TseI GCWGC 3 cut(s) 8, 539, 803
TspDTI ATGAA 3 cut(s) 258, 423, 921
TspGWI ACGGA 3 cut(s) 53, 109, 715
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 4 cut(s) 249, 374, 851, 916
XmiI GTMKAC 2 cut(s) 431, 462
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.