Rorug05G0552600

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002979
Physical Location & Seq
Forward (+)
74059447 .. 74060906
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0552600.1

Sequence Viewer

Length: 435 bp
ATGGTACAGGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCATTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATGCAGATCTGTACGCTGTTACACTTTGGGGGATATGCTCTCCTGAGAAAGTCCAGCAGTCTGTCTCAAAGTTTTGGGTTTGATACCCAACCAGTAATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGTAACCTTGTGAGCCGAGCTTTTGAATTTCAGGTGAACCATACTTCACAGTTGGCTTTTGATTTCTTTCCCTTCACAGTTGGCTTTTCTTCACAGGTGCTGACATCCCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

144

Amino Acids

16.62

Weight (kDa)

7.89

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M48 PF01435 2 - 117 4.4e-27 Peptidase family M48
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 344
AfaI GTAC 3 cut(s) 6, 172, 309
AgsI TTSAA 1 cut(s) 344
AluBI AGCT 5 cut(s) 98, 107, 115, 130, 338
AluI AGCT 5 cut(s) 98, 107, 115, 130, 338
Alw26I GTCTC 2 cut(s) 228, 269
AlwI GGATC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 2 cut(s) 9, 118
ApoI RAATTY 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 228, 269
BfaI CTAG 3 cut(s) 104, 116, 305
BglII AGATCT 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BsaI GGTCTC 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 251, 427
Bse3DI GCAATG 1 cut(s) 70
BseGI GGATG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 194
BseNI ACTGG 2 cut(s) 251, 427
BshFI GGCC 2 cut(s) 11, 120
BsmAI GTCTC 2 cut(s) 228, 269
BsnI GGCC 2 cut(s) 11, 120
Bso31I GGTCTC 1 cut(s) 269
Bsp143I GATC 2 cut(s) 63, 165
BspANI GGCC 2 cut(s) 11, 120
BspCNI CTCAG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 109
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 251, 427
BssMI GATC 2 cut(s) 63, 165
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 140, 369, 397
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 2 cut(s) 66, 168
BstMAI GTCTC 2 cut(s) 228, 269
BstMBI GATC 2 cut(s) 63, 165
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 11, 120
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 59, 145
CaiI CAGNNNCTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 109
Csp6I GTAC 3 cut(s) 5, 171, 308
CviAII CATG 1 cut(s) 110
CviQI GTAC 3 cut(s) 5, 171, 308
DdeI CTNAG 1 cut(s) 203
DpnI GATC 2 cut(s) 65, 167
DpnII GATC 2 cut(s) 63, 165
Eco147I AGGCCT 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 269
FaeI CATG 1 cut(s) 113
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 144
FokI GGATG 1 cut(s) 409
FspBI CTAG 3 cut(s) 104, 116, 305
HaeIII GGCC 2 cut(s) 11, 120
Hin1II CATG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 128
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 145, 310, 355
Hpy188III TCNNGA 2 cut(s) 110, 202
Hpy8I GTNNAC 3 cut(s) 145, 310, 355
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 3 cut(s) 140, 369, 397
HpyCH4V TGCA 2 cut(s) 75, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 2 cut(s) 63, 165
LpnPI CCDG 7 cut(s) 80, 215, 226, 264, 311, 335, 398
MaeI CTAG 3 cut(s) 104, 116, 305
MaeIII GTNAC 2 cut(s) 177, 320
MalI GATC 2 cut(s) 65, 167
MboI GATC 2 cut(s) 63, 165
MboII GAAGA 1 cut(s) 399
MflI RGATCY 1 cut(s) 165
MluCI AATT 2 cut(s) 90, 344
MnlI CCTC 2 cut(s) 33, 79
MseI TTAA 3 cut(s) 30, 132, 433
MslI CAYNNNNRTG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 63, 165
NlaIII CATG 1 cut(s) 113
NmeAIII GCCGAG 1 cut(s) 359
PagI TCATGA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 3 cut(s) 6, 172, 309
RsaNI GTAC 3 cut(s) 5, 171, 308
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 3 cut(s) 30, 132, 433
Sau3AI GATC 2 cut(s) 63, 165
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 2 cut(s) 90, 344
SseBI AGGCCT 1 cut(s) 11
SspMI CTAG 3 cut(s) 104, 116, 305
StuI AGGCCT 1 cut(s) 11
TaaI ACNGT 3 cut(s) 140, 369, 397
TasI AATT 2 cut(s) 90, 344
TatI WGTACW 1 cut(s) 307
Tru1I TTAA 3 cut(s) 30, 132, 433
Tru9I TTAA 3 cut(s) 30, 132, 433
TscAI CASTG 2 cut(s) 66, 145
TspDTI ATGAA 1 cut(s) 142
TspRI CASTG 2 cut(s) 66, 145
XapI RAATTY 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 104, 116, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.