Rh6BG062400

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002979
Physical Location & Seq
Forward (+)
9830418 .. 9835002
4585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG062400.1

Sequence Viewer

Length: 894 bp
ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCCGCCGGAGCCGAGTTGTTCTCCGACGGACGCCGCGGCCTTCGAATCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGACCTGTGGGAGAAAAAGCTTGAGACTTGTCACATGCCGGAGATGATATTTGGGGAGAGTTGTTTGGTTCTGAAGCATGTGAAGAGTGGCACCACTATTCACTTCAATGCTTTTGATGCTCTGATTGGGTGGAAGAAGGAGGCTTTGCCTCCGGTTGAAGTCCCAGCTGCTGCTCAGTGGAAGTTCAGATGTAAACCCTCTGAGCAAGTGATACTGGATTATGACTATACATTCACAACACCGTATGGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACGAAAGAGGAGAGGTATCTAAGGAGACCTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTGGCATCTAAAGAGCCTATTCTCTTTTATGATGAGATACTCCTTGTAATTGAACAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGAGAGTCATGCCAAGCGGTTGGTTTCTTCTCTTGCGTTTTTGGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACATTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGAAGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAGCAAGACCCAAAAGCTAAAGGTATCTTGTAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

297

Amino Acids

33.87

Weight (kDa)

5.49

Isoelectric Point (pI)

49.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 259 3.6e-53 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 69
AciI CCGC 6 cut(s) 36, 67, 69, 109, 578, 627
AclWI GGATC 1 cut(s) 812
AcuI CTGAAG 2 cut(s) 227, 819
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 3 cut(s) 88, 383, 463
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 4 cut(s) 241, 293, 548, 770
AluBI AGCT 8 cut(s) 28, 154, 302, 747, 761, 773, 803, 871
AluI AGCT 8 cut(s) 28, 154, 302, 747, 761, 773, 803, 871
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 92, 152, 437, 597
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 6 cut(s) 302, 305, 747, 779, 803, 806
AsuII TTCGAA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 6 cut(s) 289, 292, 734, 766, 790, 793
BccI CCATC 1 cut(s) 659
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciVI GTATCC 2 cut(s) 682, 782
BcoDI GTCTC 4 cut(s) 92, 152, 437, 597
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 2 cut(s) 682, 782
BisI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 748, 780, 804, 807
BlsI GCNGC 9 cut(s) 37, 68, 71, 304, 307, 749, 781, 805, 808
BmiI GGNNCC 2 cut(s) 43, 226
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 3 cut(s) 241, 397, 509
BmuI ACTGGG 1 cut(s) 469
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 772
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 67, 82, 402
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 383, 463
Bse1I ACTGG 2 cut(s) 354, 464
BseDI CCNNGG 3 cut(s) 67, 82, 402
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BseMII CTCAG 2 cut(s) 323, 327
BseNI ACTGG 2 cut(s) 354, 464
BseRI GAGGAG 2 cut(s) 115, 441
BseXI GCAGC 6 cut(s) 289, 292, 734, 766, 790, 793
BseYI CCCAGC 2 cut(s) 87, 298
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 3 cut(s) 39, 173, 287
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BsmAI GTCTC 4 cut(s) 92, 152, 437, 597
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 817
BspACI CCGC 6 cut(s) 36, 67, 69, 109, 578, 627
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 322, 328
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 2 cut(s) 43, 226
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 1 cut(s) 812
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 111
BsrI ACTGG 2 cut(s) 354, 464
BssECI CCNNGG 3 cut(s) 67, 82, 402
BssMI GATC 1 cut(s) 817
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 3 cut(s) 378, 604, 704
Bst6I CTCTTC 2 cut(s) 212, 600
BstACI GRCGYC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 309, 336, 438, 656
BstDSI CCRYGG 2 cut(s) 67, 82
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 820
BstMAI GTCTC 4 cut(s) 92, 152, 437, 597
BstMBI GATC 1 cut(s) 817
BstMWI GCNNNNNNNGC 4 cut(s) 41, 251, 652, 779
BstNSI RCATGY 3 cut(s) 172, 215, 892
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 6 cut(s) 289, 292, 734, 766, 790, 793
BstXI CCANNNNNNTGG 1 cut(s) 630
BsuI GTATCC 2 cut(s) 682, 782
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 2 cut(s) 67, 82
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 317, 457, 700
BveI ACCTGC 1 cut(s) 455
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 852
Cfr42I CCGCGG 1 cut(s) 70
CseI GACGC 1 cut(s) 72
CviAII CATG 5 cut(s) 169, 212, 619, 853, 889
DdeI CTNAG 4 cut(s) 309, 336, 438, 656
DpnI GATC 1 cut(s) 819
DpnII GATC 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 212, 600
EarI CTCTTC 2 cut(s) 212, 600
EciI GGCGGA 1 cut(s) 593
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 227, 819
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 5 cut(s) 172, 215, 622, 856, 892
FaqI GGGAC 1 cut(s) 281
FatI CATG 5 cut(s) 168, 211, 618, 852, 888
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 748, 780, 804, 807
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 748, 780, 804, 807
GluI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 748, 780, 804, 807
GsaI CCCAGC 2 cut(s) 91, 302
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 1 cut(s) 72
HapII CCGG 3 cut(s) 39, 173, 287
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 5 cut(s) 172, 215, 622, 856, 892
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 152, 771
HinfI GANTC 3 cut(s) 78, 100, 615
HpaII CCGG 3 cut(s) 39, 173, 287
Hpy166II GTNNAC 2 cut(s) 16, 329
Hpy188I TCNGA 6 cut(s) 58, 207, 258, 323, 337, 799
Hpy188III TCNNGA 3 cut(s) 97, 740, 853
Hpy8I GTNNAC 2 cut(s) 16, 329
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 4 cut(s) 16, 83, 265, 804
HpyCH4III ACNGT 3 cut(s) 378, 604, 704
HpyCH4V TGCA 6 cut(s) 410, 450, 471, 494, 700, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 251, 652, 779
HpyF3I CTNAG 4 cut(s) 309, 336, 438, 656
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 5 cut(s) 172, 215, 622, 856, 892
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 817
LmnI GCTCC 3 cut(s) 25, 41, 116
Lsp1109I GCAGC 6 cut(s) 289, 292, 734, 766, 790, 793
LweI GCATC 3 cut(s) 241, 397, 509
MaeIII GTNAC 2 cut(s) 164, 884
MalI GATC 1 cut(s) 819
MbiI CCGCTC 1 cut(s) 111
MboI GATC 1 cut(s) 817
MboII GAAGA 6 cut(s) 229, 280, 578, 587, 629, 728
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 480, 543, 572
MlyI GAGTC 2 cut(s) 94, 624
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 4, 136, 268, 294, 343, 377, 419, 424, 457
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 69, 302
MspI CCGG 3 cut(s) 39, 173, 287
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 41, 251, 652, 779
NdeII GATC 1 cut(s) 817
NlaIII CATG 5 cut(s) 172, 215, 622, 856, 892
NlaIV GGNNCC 2 cut(s) 43, 226
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 3 cut(s) 172, 215, 892
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 852
PciI ACATGT 1 cut(s) 888
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 9 cut(s) 37, 68, 71, 304, 307, 749, 781, 805, 808
PleI GAGTC 2 cut(s) 94, 623
PpsI GAGTC 2 cut(s) 94, 623
PscI ACATGT 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 2 cut(s) 87, 298
PspN4I GGNNCC 2 cut(s) 43, 226
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 70
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 748, 780, 804, 807
Sau3AI GATC 1 cut(s) 817
SchI GAGTC 2 cut(s) 94, 624
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 241, 397, 509
Sfr303I CCGCGG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 480, 543, 572
SsiI CCGC 6 cut(s) 36, 67, 69, 109, 578, 627
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 3 cut(s) 378, 604, 704
TaqI TCGA 4 cut(s) 15, 76, 96, 739
TasI AATT 3 cut(s) 480, 543, 572
TauI GCSGC 3 cut(s) 38, 69, 72
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 3 cut(s) 317, 464, 707
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 6 cut(s) 302, 305, 747, 779, 803, 806
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 579, 585
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 3 cut(s) 317, 464, 707
XceI RCATGY 3 cut(s) 172, 215, 892
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.