MD00G1108700.v1.1

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0002979
Physical Location & Seq
Forward (+)
22875550 .. 22877368
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1108700.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGAAGTGGAGGTCGACGATAAGGAGCTGAAAGCCGCCGGAGCCGAGCCTTTGACCGACGGGCGATACGGCCTCCGTATCCATGTCTGGGACATCGAGTCCCGCAAGCGCTCAATTCTCAGCTCCTCCAATACCGAACTGTGGGAGCAAAAGCTACATACTTGTCACTTGCCGGAGATGGTGTTTGGGGACAGTGGATTGTTCCTGGAGCATGTGAAGAGCGGCGCCACGATTCACTTCAATTCGTTTGATGCTCTGGTGGGGTGGAAGAAGGAAGCTTTGCCGCCGGTTGAAGTCCCAGCTGCTGCTCAATGGAAATTCCGAACTAAACCTTCCCAGCAAGTTATAATGGACAATGATTATACATTCACAACGCCTTACTCTGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

5.48

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 130 2.7e-12 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 222
AccI GTMKAC 1 cut(s) 15
AciI CCGC 4 cut(s) 36, 103, 222, 284
AcsI RAATTY 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 225
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 88, 141, 383
AgsI TTSAA 2 cut(s) 241, 293
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 28, 123, 154, 278, 302
AluI AGCT 5 cut(s) 28, 123, 154, 278, 302
AlwNI CAGNNNCTG 1 cut(s) 305
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 302, 305
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 2 cut(s) 111, 227
BanI GGYRCC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 289, 292
BccI CCATC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 89
BfoI RGCGCY 2 cut(s) 112, 228
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 5 cut(s) 36, 223, 284, 303, 306
BlsI GCNGC 5 cut(s) 37, 224, 285, 304, 307
Bme1390I CCNGG 1 cut(s) 206
BmeRI GACNNNNNGTC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 43, 226
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 141, 383
Bse118I RCCGGY 1 cut(s) 286
BseBI CCWGG 1 cut(s) 206
BseLI CCNNNNNNNGG 3 cut(s) 88, 141, 383
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 289, 292
BseYI CCCAGC 2 cut(s) 298, 336
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 224
BsiSI CCGG 3 cut(s) 39, 173, 287
BslFI GGGAC 4 cut(s) 85, 104, 203, 281
BslI CCNNNNNNNGG 3 cut(s) 88, 141, 383
BsmFI GGGAC 4 cut(s) 85, 104, 203, 281
BsnI GGCC 1 cut(s) 72
BspACI CCGC 4 cut(s) 36, 103, 222, 284
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 43, 226
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 141, 194
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 119
BstH2I RGCGCY 2 cut(s) 112, 228
BstHHI GCGC 2 cut(s) 111, 227
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 289, 292
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 2 cut(s) 111, 227
Cfr10I RCCGGY 1 cut(s) 286
CviAII CATG 2 cut(s) 83, 212
CviJI RGCY 9 cut(s) 28, 35, 44, 49, 72, 123, 154, 278, 302
CviKI_1 RGCY 9 cut(s) 28, 35, 44, 49, 72, 123, 154, 278, 302
DdeI CTNAG 1 cut(s) 119
DinI GGCGCC 1 cut(s) 226
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 212
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 212
Eco47III AGCGCT 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaeI CATG 2 cut(s) 86, 215
FaiI YATR 5 cut(s) 84, 159, 213, 347, 363
FaqI GGGAC 4 cut(s) 85, 104, 203, 281
FatI CATG 2 cut(s) 82, 211
FauI CCCGC 1 cut(s) 110
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 36, 223, 284, 303, 306
Fsp4HI GCNGC 5 cut(s) 36, 223, 284, 303, 306
GlaI GCGC 2 cut(s) 110, 226
GluI GCNGC 5 cut(s) 36, 223, 284, 303, 306
GsaI CCCAGC 2 cut(s) 302, 340
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 2 cut(s) 112, 228
HaeIII GGCC 1 cut(s) 72
HapII CCGG 3 cut(s) 39, 173, 287
HhaI GCGC 2 cut(s) 111, 227
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 86, 215
Hin6I GCGC 2 cut(s) 109, 225
HinP1I GCGC 2 cut(s) 109, 225
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 2 cut(s) 98, 232
HpaII CCGG 3 cut(s) 39, 173, 287
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 2 cut(s) 265, 342
HpyCH4III ACNGT 2 cut(s) 141, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 86, 215
HspAI GCGC 2 cut(s) 109, 225
KasI GGCGCC 1 cut(s) 224
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 5 cut(s) 25, 41, 128, 145, 208
Lsp1109I GCAGC 2 cut(s) 289, 292
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 164
MbiI CCGCTC 1 cut(s) 222
MboII GAAGA 2 cut(s) 229, 280
MluCI AATT 4 cut(s) 114, 241, 317, 388
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 4, 83, 136
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 39, 173, 287
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 41
NarI GGCGCC 1 cut(s) 225
NlaIII CATG 2 cut(s) 86, 215
NlaIV GGNNCC 2 cut(s) 43, 226
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 232
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 5 cut(s) 37, 224, 285, 304, 307
PleI GAGTC 1 cut(s) 106
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 2 cut(s) 298, 336
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 43, 226
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 212
SatI GCNGC 5 cut(s) 36, 223, 284, 303, 306
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 206
SetI ASST 7 cut(s) 15, 30, 125, 156, 280, 304, 334
SfaNI GCATC 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 226
Sse9I AATT 4 cut(s) 114, 241, 317, 388
SsiI CCGC 4 cut(s) 36, 103, 222, 284
SspDI GGCGCC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 141, 194
TaqI TCGA 2 cut(s) 15, 96
TaqII GACCGA 1 cut(s) 71
TasI AATT 4 cut(s) 114, 241, 317, 388
TauI GCSGC 3 cut(s) 38, 225, 286
TfiI GAWTC 1 cut(s) 232
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 2 cut(s) 302, 305
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.