TIP41-like family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34270 |
| fragaria_vesca | FvH4_2g04780 FvH4_2g04780 |
| malus_domestica | MD00G1108700.v1.1 MD10G1100100.v1.1 |
| prunus_persica | Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 |
| pyrus_communis | pycom10g08600 |
| rosa_chinensis | RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511 |
| rosa_laevigata | RLG00000014907 RLG00000014910 |
| rosa_multiflora | Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008 |
| rosa_roxburghii | Rroxscaffold_7G00210720 Rroxscaffold_7G00210760 |
| rosa_rugosa | Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800 |
| rosa_samantha | Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100 |
| rosa_wichuraiana | Rw6G006120 Rw6G007800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AgeI | ACCGGT | 1 cut(s) | 64 |
| AgsI | TTSAA | 1 cut(s) | 71 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 32 |
| AluBI | AGCT | 2 cut(s) | 80, 115 |
| AluI | AGCT | 2 cut(s) | 80, 115 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 83 |
| ApeKI | GCWGC | 2 cut(s) | 80, 83 |
| AsiGI | ACCGGT | 1 cut(s) | 64 |
| BbvI | GCAGC | 2 cut(s) | 67, 70 |
| BccI | CCATC | 1 cut(s) | 119 |
| BisI | GCNGC | 2 cut(s) | 81, 84 |
| BlsI | GCNGC | 2 cut(s) | 82, 85 |
| BmsI | GCATC | 1 cut(s) | 92 |
| BoxI | GACNNNNGTC | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 1 cut(s) | 64 |
| Bse118I | RCCGGY | 1 cut(s) | 64 |
| BseXI | GCAGC | 2 cut(s) | 67, 70 |
| BseYI | CCCAGC | 1 cut(s) | 76 |
| BshTI | ACCGGT | 1 cut(s) | 64 |
| BsiSI | CCGG | 2 cut(s) | 5, 65 |
| BslFI | GGGAC | 2 cut(s) | 35, 59 |
| BsmFI | GGGAC | 2 cut(s) | 35, 59 |
| BsrFI | RCCGGY | 1 cut(s) | 64 |
| BssAI | RCCGGY | 1 cut(s) | 64 |
| Bst4CI | ACNGT | 1 cut(s) | 26 |
| BstDEI | CTNAG | 1 cut(s) | 116 |
| BstNSI | RCATGY | 1 cut(s) | 47 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 27 |
| BstV1I | GCAGC | 2 cut(s) | 67, 70 |
| CaiI | CAGNNNCTG | 1 cut(s) | 83 |
| Cfr10I | RCCGGY | 1 cut(s) | 64 |
| CspAI | ACCGGT | 1 cut(s) | 64 |
| CviAII | CATG | 1 cut(s) | 44 |
| CviJI | RGCY | 2 cut(s) | 80, 115 |
| CviKI_1 | RGCY | 2 cut(s) | 80, 115 |
| DdeI | CTNAG | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| FaeI | CATG | 1 cut(s) | 47 |
| FaiI | YATR | 2 cut(s) | 45, 137 |
| FaqI | GGGAC | 2 cut(s) | 35, 59 |
| FatI | CATG | 1 cut(s) | 43 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 84 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 84 |
| GluI | GCNGC | 2 cut(s) | 81, 84 |
| GsaI | CCCAGC | 1 cut(s) | 80 |
| HapII | CCGG | 2 cut(s) | 5, 65 |
| Hin1II | CATG | 1 cut(s) | 47 |
| HindIII | AAGCTT | 1 cut(s) | 113 |
| HpaII | CCGG | 2 cut(s) | 5, 65 |
| Hpy188I | TCNGA | 2 cut(s) | 39, 101 |
| Hpy188III | TCNNGA | 1 cut(s) | 91 |
| HpyCH4III | ACNGT | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 1 cut(s) | 105 |
| HpyF3I | CTNAG | 1 cut(s) | 116 |
| Hsp92II | CATG | 1 cut(s) | 47 |
| LpnPI | CCDG | 5 cut(s) | 17, 18, 76, 78, 90 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 70 |
| LweI | GCATC | 1 cut(s) | 92 |
| MspA1I | CMGCKG | 1 cut(s) | 80 |
| MspI | CCGG | 2 cut(s) | 5, 65 |
| NlaIII | CATG | 1 cut(s) | 47 |
| NspI | RCATGY | 1 cut(s) | 47 |
| PinAI | ACCGGT | 1 cut(s) | 64 |
| PkrI | GCNGC | 2 cut(s) | 82, 85 |
| PshAI | GACNNNNGTC | 1 cut(s) | 27 |
| PspFI | CCCAGC | 1 cut(s) | 76 |
| PstNI | CAGNNNCTG | 1 cut(s) | 83 |
| PvuII | CAGCTG | 1 cut(s) | 80 |
| SatI | GCNGC | 2 cut(s) | 81, 84 |
| SetI | ASST | 2 cut(s) | 82, 117 |
| SfaNI | GCATC | 1 cut(s) | 92 |
| SgeI | CNNG | 6 cut(s) | 17, 44, 56, 77, 89, 103 |
| TaaI | ACNGT | 1 cut(s) | 26 |
| TseI | GCWGC | 2 cut(s) | 80, 83 |
| XceI | RCATGY | 1 cut(s) | 47 |