Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002113.1

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Forward (+)

4006 .. 5737

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgattgcaaagaaaataattgatgtggttgcattggcatctaaggatcctattctcttttatgatgaggtagtttgtatatatgaagatgaattggcggataatggtgcatcacttctaactgtagaagtgagagtcagatacccggataccccttctgaaggtgctacctacaatgatccaagtatcatcagccaaaagcttcctgtggtcatgaataagacccaaaagctaaaggtacctagctataagttgtttgatttgggtgggcttcatggttctcttgtggacatattgcatcatgggttggccggtcgtaatcctcaaatacgtgaactttggcttgcatcatttgtgctggtgctatggtgtatctggcacttcagaaacaaggtaaaatatgatggaattattgtcgagctagccaaggcatatcaattgattaatggacaaatcttagcttccagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

6.41

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	3 cut(s)	41, 54, 173
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	180, 367
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	202, 232, 246, 421, 461
AluI	AGCT	5 cut(s)	202, 232, 246, 421, 461
AlwI	GGATC	3 cut(s)	41, 54, 173
AoxI	GGCC	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	444
Asp718I	GGTACC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	238
BccI	CCATC	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	2 cut(s)	243, 422
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	48, 240
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	4 cut(s)	47, 119, 307, 356
BmtI	GCTAGC	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	465
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	146, 312
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	46, 178
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	48, 240
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	41, 54, 173
BspT107I	GGYRCC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	465
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	2 cut(s)	46, 178
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	345, 423
BstDEI	CTNAG	2 cut(s)	42, 457
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	49, 181
BstMBI	GATC	2 cut(s)	46, 178
BstMCI	CGRYCG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	345, 423
CciI	TCATGA	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	3 cut(s)	214, 275, 302
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	42, 457
DpnI	GATC	2 cut(s)	48, 180
DpnII	GATC	2 cut(s)	46, 178
EaeI	YGGCCR	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	426
Eco57I	CTGAAG	2 cut(s)	180, 367
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	217, 278, 305
FatI	CATG	3 cut(s)	213, 274, 301
FspBI	CTAG	2 cut(s)	243, 422
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	2 cut(s)	146, 312
Hin1II	CATG	3 cut(s)	217, 278, 305
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	146, 312
Hpy166II	GTNNAC	2 cut(s)	289, 335
Hpy188I	TCNGA	3 cut(s)	140, 160, 386
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	2 cut(s)	289, 335
HpyAV	CCTTC	2 cut(s)	155, 165
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	8, 32, 110, 298, 347
HpyF3I	CTNAG	2 cut(s)	42, 457
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	3 cut(s)	217, 278, 305
KpnI	GGTACC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	46, 178
LpnPI	CCDG	5 cut(s)	159, 219, 325, 344, 361
LweI	GCATC	4 cut(s)	47, 119, 307, 356
MaeI	CTAG	2 cut(s)	243, 422
MaeII	ACGT	1 cut(s)	331
MalI	GATC	2 cut(s)	48, 180
MboI	GATC	2 cut(s)	46, 178
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	18, 92, 408, 437
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	2 cut(s)	61, 333
MseI	TTAA	1 cut(s)	444
MspI	CCGG	2 cut(s)	146, 312
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	437
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	46, 178
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	217, 278, 305
NlaIV	GGNNCC	2 cut(s)	48, 240
PagI	TCATGA	1 cut(s)	213
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	48, 240
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	46, 178
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	47, 119, 307, 356
SfcI	CTRYAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	18, 92, 408, 437
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	243, 422
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	18, 92, 408, 437
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TspDTI	ATGAA	4 cut(s)	99, 105, 230, 263
VspI	ATTAAT	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	159
XspI	CTAG	2 cut(s)	243, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.