Rroxscaffold_7G00210720

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002979
Physical Location & Seq
Reverse (-)
61188943 .. 61193705
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210720.1

Sequence Viewer

Length: 879 bp
ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCCGCCGGAGCCGAGTTGTTCTCCGACGGACGCCGCGGCCTTCGAATCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGTGGGAGAAAAAGCTTGAGACTTGTCACATGCCGGAGATGATATTTGGGGAGAGTTGTTTGGTTCTGAAGCATGTGAAAAGTGGCACCACTATTCACTTCAATGCTTTTGATGCTCTGATTGGGTGGAAGAAGGAGGCTTTGCCTCCAGTTGAAGTCCCAGCTGCTGCTCAGTGGAAGTTCAGATGTAAACCCTCTGAGCAAGTGATACTGGATTATGACTATACATTCACAACACCGTACGGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACGAAGGAGGAGAGGTATCTAAGGAGACCTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTGGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGAGAGTCATGCCGAGCGGTTGGTTTCTCTTCTCTTGCGTTTTTGGCTTAAACATAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACATTTCAAGCTTTGGCTGCAGTAAGTTCAAGTCAAGCATCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAGCAAGACCCAAAAGCTAAAGGTATCTAGTAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

292

Amino Acids

32.87

Weight (kDa)

5.28

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 254 9.5e-49 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 2 cut(s) 111, 606
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 69
AciI CCGC 6 cut(s) 36, 67, 69, 109, 557, 606
AclWI GGATC 1 cut(s) 797
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 88, 383, 463
AgsI TTSAA 4 cut(s) 241, 293, 755, 777
AluBI AGCT 7 cut(s) 28, 154, 302, 732, 746, 758, 856
AluI AGCT 7 cut(s) 28, 154, 302, 732, 746, 758, 856
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 92, 152, 437, 576
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 5 cut(s) 302, 305, 732, 764, 791
AsuII TTCGAA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 5 cut(s) 289, 292, 719, 751, 778
BccI CCATC 1 cut(s) 644
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciVI GTATCC 1 cut(s) 667
BcoDI GTCTC 4 cut(s) 92, 152, 437, 576
BfaI CTAG 1 cut(s) 867
BfmI CTRYAG 1 cut(s) 765
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 1 cut(s) 667
BisI GCNGC 8 cut(s) 36, 67, 70, 303, 306, 733, 765, 792
BlsI GCNGC 8 cut(s) 37, 68, 71, 304, 307, 734, 766, 793
BmiI GGNNCC 2 cut(s) 43, 226
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 4 cut(s) 241, 397, 509, 794
BmuI ACTGGG 1 cut(s) 469
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 2 cut(s) 270, 757
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 67, 82, 402
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 690, 720
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 383, 463
Bse1I ACTGG 3 cut(s) 287, 354, 464
BseDI CCNNGG 3 cut(s) 67, 82, 402
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BseMII CTCAG 2 cut(s) 323, 327
BseNI ACTGG 3 cut(s) 287, 354, 464
BseRI GAGGAG 2 cut(s) 115, 441
BseXI GCAGC 5 cut(s) 289, 292, 719, 751, 778
BseYI CCCAGC 2 cut(s) 87, 298
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 39, 173
BsiWI CGTACG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BsmAI GTCTC 4 cut(s) 92, 152, 437, 576
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 802
BspACI CCGC 6 cut(s) 36, 67, 69, 109, 557, 606
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 322, 328
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 43, 226
BspMAI CTGCAG 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 1 cut(s) 797
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 2 cut(s) 111, 606
BsrI ACTGG 3 cut(s) 287, 354, 464
BssECI CCNNGG 3 cut(s) 67, 82, 402
BssMI GATC 1 cut(s) 802
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 141, 378, 583, 689
Bst6I CTCTTC 2 cut(s) 579, 623
BstACI GRCGYC 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 76
BstDEI CTNAG 3 cut(s) 309, 336, 438
BstDSI CCRYGG 2 cut(s) 67, 82
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 805
BstMAI GTCTC 4 cut(s) 92, 152, 437, 576
BstMBI GATC 1 cut(s) 802
BstMWI GCNNNNNNNGC 5 cut(s) 41, 251, 633, 764, 791
BstNSI RCATGY 2 cut(s) 172, 215
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 5 cut(s) 289, 292, 719, 751, 778
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 2 cut(s) 67, 82
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 317, 457, 685
BveI ACCTGC 1 cut(s) 455
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 837
Cfr42I CCGCGG 1 cut(s) 70
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 379
CviAII CATG 4 cut(s) 169, 212, 598, 838
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 3 cut(s) 309, 336, 438
DpnI GATC 1 cut(s) 804
DpnII GATC 1 cut(s) 802
Eam1104I CTCTTC 2 cut(s) 579, 623
EarI CTCTTC 2 cut(s) 579, 623
EciI GGCGGA 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 4 cut(s) 172, 215, 601, 841
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 168, 211, 597, 837
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 8 cut(s) 36, 67, 70, 303, 306, 733, 765, 792
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 8 cut(s) 36, 67, 70, 303, 306, 733, 765, 792
FspBI CTAG 1 cut(s) 867
GluI GCNGC 8 cut(s) 36, 67, 70, 303, 306, 733, 765, 792
GsaI CCCAGC 2 cut(s) 91, 302
GsuI CTGGAG 2 cut(s) 270, 757
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 39, 173
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 4 cut(s) 172, 215, 601, 841
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 152, 756
HinfI GANTC 3 cut(s) 78, 100, 594
HpaII CCGG 2 cut(s) 39, 173
Hpy166II GTNNAC 2 cut(s) 16, 329
Hpy188I TCNGA 5 cut(s) 58, 207, 258, 323, 337
Hpy188III TCNNGA 3 cut(s) 97, 725, 838
Hpy8I GTNNAC 2 cut(s) 16, 329
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 4 cut(s) 16, 83, 265, 416
HpyCH4III ACNGT 4 cut(s) 141, 378, 583, 689
HpyCH4V TGCA 6 cut(s) 410, 450, 471, 494, 685, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 251, 633, 764, 791
HpyF3I CTNAG 3 cut(s) 309, 336, 438
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 4 cut(s) 172, 215, 601, 841
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 802
LmnI GCTCC 3 cut(s) 25, 41, 116
Lsp1109I GCAGC 5 cut(s) 289, 292, 719, 751, 778
LweI GCATC 4 cut(s) 241, 397, 509, 794
MaeI CTAG 1 cut(s) 867
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 804
MbiI CCGCTC 2 cut(s) 111, 606
MboI GATC 1 cut(s) 802
MboII GAAGA 5 cut(s) 280, 557, 566, 610, 713
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 480, 551
MlyI GAGTC 2 cut(s) 94, 603
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 2 cut(s) 638, 668
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 69, 302
MspI CCGG 2 cut(s) 39, 173
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 5 cut(s) 41, 251, 633, 764, 791
NdeII GATC 1 cut(s) 802
NlaIII CATG 4 cut(s) 172, 215, 601, 841
NlaIV GGNNCC 2 cut(s) 43, 226
NmeAIII GCCGAG 2 cut(s) 70, 627
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 2 cut(s) 172, 215
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 837
PfeI GAWTC 1 cut(s) 78
Pfl23II CGTACG 1 cut(s) 378
PkrI GCNGC 8 cut(s) 37, 68, 71, 304, 307, 734, 766, 793
PleI GAGTC 2 cut(s) 94, 602
PpsI GAGTC 2 cut(s) 94, 602
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 2 cut(s) 87, 298
PspLI CGTACG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 43, 226
PstI CTGCAG 1 cut(s) 769
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 70
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 638, 668
SatI GCNGC 8 cut(s) 36, 67, 70, 303, 306, 733, 765, 792
Sau3AI GATC 1 cut(s) 802
SchI GAGTC 2 cut(s) 94, 603
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 4 cut(s) 241, 397, 509, 794
SfcI CTRYAG 1 cut(s) 765
Sfr303I CCGCGG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 480, 551
SsiI CCGC 6 cut(s) 36, 67, 69, 109, 557, 606
SspMI CTAG 1 cut(s) 867
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 4 cut(s) 141, 378, 583, 689
TaqI TCGA 4 cut(s) 15, 76, 96, 724
TasI AATT 2 cut(s) 480, 551
TauI GCSGC 3 cut(s) 38, 69, 72
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 638, 668
Tru9I TTAA 2 cut(s) 638, 668
TscAI CASTG 3 cut(s) 317, 464, 692
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 5 cut(s) 302, 305, 732, 764, 791
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 558, 564
TspGWI ACGGA 2 cut(s) 75, 396
TspRI CASTG 3 cut(s) 317, 464, 692
XceI RCATGY 2 cut(s) 172, 215
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.