Rh6CG077000

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0002979
Physical Location & Seq
Reverse (-)
8096267 .. 8104475
8209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG077000.1

Sequence Viewer

Length: 579 bp
ATGATATTTGGGGACAGTTGTCTGGTTCTGAAGCATGTGAAAAATAAACCCTCCGAGCAAGTAATACTGGACTATGACTATACATTCACAACACCGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACAAAGGAGGTGAGATATCTAAGGAGAACTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGCTTAGAGTTGATGGAAGCTGCTGGAGAGAAGCTAGGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGATGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGAACTTCCTCATGCAGAAGTTACAGGAGAAAACCTTGCCTGAAGCTGGTCTTGACTGTGAGTCGGTGTCTCCTTCTGTTGAGAGCAAATTCCCACATAGGCTCAGGTTCAGCCACTCTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

192

Amino Acids

21.75

Weight (kDa)

5.88

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 14 - 111 2.4e-23 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 2 cut(s) 50, 516
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 101, 181, 500
AgsI TTSAA 1 cut(s) 350
AhdI GACNNNNNGTC 1 cut(s) 514
AluBI AGCT 5 cut(s) 327, 341, 353, 451, 500
AluI AGCT 5 cut(s) 327, 341, 353, 451, 500
Alw26I GTCTC 2 cut(s) 294, 528
AlwI GGATC 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 327, 359, 383, 386
ApoI RAATTY 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 158
BbvI GCAGC 4 cut(s) 314, 346, 370, 373
BccI CCATC 1 cut(s) 314
BciVI GTATCC 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 294, 528
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 4 cut(s) 328, 360, 384, 387
BlsI GCNGC 4 cut(s) 329, 361, 385, 388
BmeRI GACNNNNNGTC 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 3 cut(s) 115, 227, 370
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 181, 500
Bse1I ACTGG 2 cut(s) 72, 182
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 3 cut(s) 101, 181, 500
BseMII CTCAG 1 cut(s) 571
BseNI ACTGG 2 cut(s) 72, 182
BseXI GCAGC 4 cut(s) 314, 346, 370, 373
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 101, 181, 500
BsmAI GTCTC 2 cut(s) 294, 528
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 570
BspHI TCATGA 1 cut(s) 432
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 72, 182
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 397
BssT1I CCWWGG 1 cut(s) 120
Bst4CI ACNGT 4 cut(s) 17, 96, 301, 512
Bst6I CTCTTC 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 156, 311, 557
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 2 cut(s) 294, 528
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 38
BstPAI GACNNNNGTC 1 cut(s) 18
BstV1I GCAGC 4 cut(s) 314, 346, 370, 373
BsuI GTATCC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 432
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 1 cut(s) 557
CviAII CATG 3 cut(s) 35, 433, 466
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 3 cut(s) 156, 311, 557
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
DriI GACNNNNNGTC 1 cut(s) 514
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 120
Eco32I GATATC 1 cut(s) 153
Eco57I CTGAAG 2 cut(s) 50, 516
EcoRV GATATC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 3 cut(s) 38, 436, 469
FaiI YATR 9 cut(s) 36, 75, 81, 243, 261, 434, 447, 467, 552
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 34, 432, 465
Fnu4HI GCNGC 4 cut(s) 328, 360, 384, 387
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 328, 360, 384, 387
FspBI CTAG 1 cut(s) 342
GluI GCNGC 4 cut(s) 328, 360, 384, 387
GsuI CTGGAG 1 cut(s) 352
Hin1II CATG 3 cut(s) 38, 436, 469
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 1 cut(s) 515
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 3 cut(s) 30, 55, 379
Hpy188III TCNNGA 2 cut(s) 433, 506
HpyAV CCTTC 2 cut(s) 384, 537
HpyCH4III ACNGT 4 cut(s) 17, 96, 301, 512
HpyCH4V TGCA 6 cut(s) 128, 168, 189, 212, 362, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 156, 311, 557
Hsp92II CATG 3 cut(s) 38, 436, 469
Kzo9I GATC 1 cut(s) 397
LpnPI CCDG 9 cut(s) 8, 53, 163, 316, 438, 464, 486, 507, 544
Lsp1109I GCAGC 4 cut(s) 314, 346, 370, 373
LweI GCATC 3 cut(s) 115, 227, 370
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 474
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 2 cut(s) 275, 284
MluCI AATT 3 cut(s) 198, 269, 542
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 6 cut(s) 61, 95, 137, 175, 241, 473
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 1 cut(s) 397
NlaIII CATG 3 cut(s) 38, 436, 469
NspI RCATGY 1 cut(s) 38
PagI TCATGA 1 cut(s) 432
PkrI GCNGC 4 cut(s) 329, 361, 385, 388
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 18
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SatI GCNGC 4 cut(s) 328, 360, 384, 387
Sau3AI GATC 1 cut(s) 397
SchI GAGTC 1 cut(s) 524
SfaNI GCATC 3 cut(s) 115, 227, 370
Sse9I AATT 3 cut(s) 198, 269, 542
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 4 cut(s) 17, 96, 301, 512
TasI AATT 3 cut(s) 198, 269, 542
TscAI CASTG 1 cut(s) 182
TseI GCWGC 4 cut(s) 327, 359, 383, 386
TspDTI ATGAA 3 cut(s) 276, 282, 449
TspRI CASTG 1 cut(s) 182
XapI RAATTY 1 cut(s) 542
XceI RCATGY 1 cut(s) 38
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.