Rw6G007800

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002979
Physical Location & Seq
Reverse (-)
12982834 .. 12988621
5788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007800.1

Sequence Viewer

Length: 768 bp
ATGGAAATAGAGGTGGACGAGAAAGCCGCTGGACCTGAGTTGTTCTCCGACGGACGCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGTGGGAGAAGAAGCTTGAGACTTGTCACATGCCGGAGATGATATTTGGGGACAGTTGTCTGGTTCTGAAGCATGTGAAAAAGTGGTTGCCACCGGTTGAAGTCCCAGCTGCTGCTCTGTGGAAGTTCAGATGTAAACCCTCCGAGCAAGTAATACTGGACTATGACTATACATTCACAACACCGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGGTCACAAAGGAGGTGAGATATCTTAGGAGAACTGCAATCTCCTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGACCCTATTATCTTTTATGATGAGATGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGGACATATATCTTACTTTTGAATCTAGAGTCATGCCAAGCGGTTGGTTTCTTCTCTTACAATTTTGGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATAAGGGATACCCTTCTGACGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGCCACTCTCGTTGATTAAGATCTTCTGTTTCTTCATTGTTATCATCGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

255

Amino Acids

29.46

Weight (kDa)

6.1

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 61 - 207 6.3e-28 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 3 cut(s) 27, 85, 528
AclWI GGATC 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 64, 305
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 215, 509
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 3 cut(s) 130, 224, 709
AluI AGCT 3 cut(s) 130, 224, 709
Alw26I GTCTC 3 cut(s) 68, 128, 474
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 1 cut(s) 227
ApeKI GCWGC 4 cut(s) 224, 227, 641, 644
AsiGI ACCGGT 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 32
BbvI GCAGC 4 cut(s) 211, 214, 628, 631
BccI CCATC 2 cut(s) 448, 560
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 382
BciVI GTATCC 2 cut(s) 583, 620
BcoDI GTCTC 3 cut(s) 68, 128, 474
BfaI CTAG 1 cut(s) 513
BfuI GTATCC 2 cut(s) 583, 620
BglII AGATCT 1 cut(s) 732
BisI GCNGC 5 cut(s) 27, 225, 228, 642, 645
BlsI GCNGC 5 cut(s) 28, 226, 229, 643, 646
Bme1390I CCNGG 1 cut(s) 382
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 2 cut(s) 319, 431
BoxI GACNNNNGTC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 731
BsaHI GRCGYC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 58, 324, 381
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 305
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 731
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 58, 324, 381
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 2 cut(s) 64, 305
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 4 cut(s) 211, 214, 628, 631
BseYI CCCAGC 2 cut(s) 63, 220
BshTI ACCGGT 1 cut(s) 208
BsiSI CCGG 2 cut(s) 149, 209
BslFI GGGAC 2 cut(s) 179, 203
BslI CCNNNNNNNGG 2 cut(s) 64, 305
BsmAI GTCTC 3 cut(s) 68, 128, 474
BsmFI GGGAC 2 cut(s) 179, 203
Bsp143I GATC 2 cut(s) 655, 732
BspACI CCGC 3 cut(s) 27, 85, 528
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 690
BspPI GGATC 1 cut(s) 650
BsrBI CCGCTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 58, 324, 381
BssMI GATC 2 cut(s) 655, 732
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 5 cut(s) 117, 170, 300, 481, 605
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 36, 362, 557
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 2 cut(s) 658, 735
BstMAI GTCTC 3 cut(s) 68, 128, 474
BstMBI GATC 2 cut(s) 655, 732
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 2 cut(s) 148, 191
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 380
BstV1I GCAGC 4 cut(s) 211, 214, 628, 631
BstX2I RGATCY 1 cut(s) 732
BstXI CCANNNNNNTGG 1 cut(s) 531
BstYI RGATCY 1 cut(s) 732
BsuI GTATCC 2 cut(s) 583, 620
BtgI CCRYGG 1 cut(s) 58
BtgZI GCGATG 1 cut(s) 742
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 1 cut(s) 690
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 2 cut(s) 63, 647
Csp6I GTAC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 4 cut(s) 145, 188, 520, 691
CviJI RGCY 9 cut(s) 26, 63, 130, 224, 556, 672, 679, 709, 715
CviKI_1 RGCY 9 cut(s) 26, 63, 130, 224, 556, 672, 679, 709, 715
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 36, 362, 557
DpnI GATC 2 cut(s) 657, 734
DpnII GATC 2 cut(s) 655, 732
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 324
Eco32I GATATC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 4 cut(s) 148, 191, 523, 694
FaqI GGGAC 2 cut(s) 179, 203
FatI CATG 4 cut(s) 144, 187, 519, 690
Fnu4HI GCNGC 5 cut(s) 27, 225, 228, 642, 645
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 5 cut(s) 27, 225, 228, 642, 645
FspBI CTAG 1 cut(s) 513
GluI GCNGC 5 cut(s) 27, 225, 228, 642, 645
GsaI CCCAGC 2 cut(s) 67, 224
HapII CCGG 2 cut(s) 149, 209
HgaI GACGC 2 cut(s) 63, 647
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 4 cut(s) 148, 191, 523, 694
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 76, 509, 516
HpaII CCGG 2 cut(s) 149, 209
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 3 cut(s) 16, 251, 490
Hpy188I TCNGA 5 cut(s) 49, 183, 245, 259, 637
Hpy188III TCNNGA 3 cut(s) 73, 513, 691
Hpy8I GTNNAC 3 cut(s) 16, 251, 490
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 642
HpyCH4III ACNGT 5 cut(s) 117, 170, 300, 481, 605
HpyCH4V TGCA 5 cut(s) 332, 374, 393, 416, 601
HpyF3I CTNAG 3 cut(s) 36, 362, 557
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 4 cut(s) 148, 191, 523, 694
Kzo9I GATC 2 cut(s) 655, 732
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 4 cut(s) 211, 214, 628, 631
LweI GCATC 2 cut(s) 319, 431
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 140, 340
MalI GATC 2 cut(s) 657, 734
MbiI CCGCTC 1 cut(s) 87
MboI GATC 2 cut(s) 655, 732
MboII GAAGA 5 cut(s) 136, 464, 530, 727, 736
MflI RGATCY 1 cut(s) 732
MluCI AATT 2 cut(s) 402, 548
MlyI GAGTC 2 cut(s) 70, 525
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 4, 112, 265, 299, 343, 379
MseI TTAA 2 cut(s) 584, 729
MspA1I CMGCKG 2 cut(s) 29, 224
MspI CCGG 2 cut(s) 149, 209
MspR9I CCNGG 1 cut(s) 382
MvaI CCWGG 1 cut(s) 382
NdeII GATC 2 cut(s) 655, 732
NlaIII CATG 4 cut(s) 148, 191, 523, 694
NmuCI GTSAC 2 cut(s) 140, 340
NspI RCATGY 2 cut(s) 148, 191
PagI TCATGA 1 cut(s) 690
PfeI GAWTC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 338
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 5 cut(s) 28, 226, 229, 643, 646
PleI GAGTC 2 cut(s) 70, 524
PpsI GAGTC 2 cut(s) 70, 524
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 380
PspFI CCCAGC 2 cut(s) 63, 220
PspGI CCWGG 1 cut(s) 380
PspPI GGNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 732
PsyI GACNNNGTC 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 2 cut(s) 584, 729
SatI GCNGC 5 cut(s) 27, 225, 228, 642, 645
Sau3AI GATC 2 cut(s) 655, 732
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 70, 525
ScrFI CCNGG 1 cut(s) 382
SetI ASST 8 cut(s) 15, 37, 132, 226, 326, 342, 354, 711
SfaNI GCATC 2 cut(s) 319, 431
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 402, 548
SsiI CCGC 3 cut(s) 27, 85, 528
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 5 cut(s) 117, 170, 300, 481, 605
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 402, 548
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 584, 729
Tru9I TTAA 2 cut(s) 584, 729
TscAI CASTG 1 cut(s) 608
TseFI GTSAC 2 cut(s) 140, 340
TseI GCWGC 4 cut(s) 224, 227, 641, 644
Tsp45I GTSAC 2 cut(s) 140, 340
TspDTI ATGAA 2 cut(s) 707, 736
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 608
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 32
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 2 cut(s) 148, 191
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.