Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023759.1

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 936

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023759.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgattgcaaagaaaataattgatgtggttgcattggcatctaaggagcctattctcttttatgatgaggtagtttgtatatatgaagatgaattggcggataatggtgcgtcacttctaactgtagaagtgagagtcagatacccggataccccttctgaaggtgctacctacaatgatccaagtatcatcagccaaaagcttcctgtggtcatgaataagacccaaaagctaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

79

Amino Acids

8.8

Weight (kDa)

4.76

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	202, 232
AluI	AGCT	2 cut(s)	202, 232
AlwI	GGATC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	173
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	213
CseI	GACGC	1 cut(s)	99
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	4 cut(s)	49, 195, 202, 232
CviKI_1	RGCY	4 cut(s)	49, 195, 202, 232
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	180
EcoNI	CCTNNNNNAGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	63, 80, 82, 84, 215
FatI	CATG	1 cut(s)	213
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	140, 160
Hpy188III	TCNNGA	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	155, 165
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	8, 32
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	2 cut(s)	159, 219
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	98
MluCI	AATT	2 cut(s)	18, 92
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	1 cut(s)	61
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	111
PagI	TCATGA	1 cut(s)	213
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	5 cut(s)	72, 166, 173, 204, 234
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	123
SgeI	CNNG	5 cut(s)	157, 158, 195, 218, 226
Sse9I	AATT	2 cut(s)	18, 92
SsiI	CCGC	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	2 cut(s)	18, 92
TseFI	GTSAC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	3 cut(s)	99, 105, 230
XagI	CCTNNNNNAGG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.