Rh6AG088000

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002979
Physical Location & Seq
Reverse (-)
13185287 .. 13192943
7657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088000.1

Sequence Viewer

Length: 678 bp
ATGATCGGATCTTCAGTTGTTCTCCGACGGACGCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTCTAGTGTGGGAGAAGAAGCTTGAGACTTGTCCCATGCCGGAGATGATATTTGGGGACAGTTGTCTGGTTCTGAAGCATGTGAAAAAGTGGTTGCCACCGGTTGAAGTCCCAGCTGCTGCTCTCTGGAAGTTCAGATGTAAACCCTCCGAGCAAGTAATACTGGACTATGACTATACATTCACAACACCGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACAAAGGAGGTGAGATATCTAAGGAGAACTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGCTTAGAAGCTGCTGGAGAGAAGCTAGGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGATGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGGCAAAAGAACGTACAGGAAAAGGAATGTTAGGCACCGGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

225

Amino Acids

25.45

Weight (kDa)

8.15

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 55 - 165 2.3e-24 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 461
AclWI GGATC 2 cut(s) 16, 569
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 2 cut(s) 284, 646
AfiI CCNNNNNNNGG 3 cut(s) 41, 287, 367
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 197, 527
AluBI AGCT 6 cut(s) 112, 206, 504, 518, 530, 628
AluI AGCT 6 cut(s) 112, 206, 504, 518, 530, 628
Alw26I GTCTC 3 cut(s) 45, 110, 480
AlwI GGATC 2 cut(s) 16, 569
AlwNI CAGNNNCTG 1 cut(s) 209
ApeKI GCWGC 6 cut(s) 206, 209, 504, 536, 560, 563
AsiGI ACCGGT 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 665
BbvI GCAGC 6 cut(s) 193, 196, 491, 523, 547, 550
BceAI ACGGC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 45, 110, 480
BfaI CTAG 2 cut(s) 95, 519
BfuI GTATCC 1 cut(s) 539
BisI GCNGC 6 cut(s) 207, 210, 505, 537, 561, 564
BlsI GCNGC 6 cut(s) 208, 211, 506, 538, 562, 565
BmiI GGNNCC 1 cut(s) 667
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 3 cut(s) 301, 413, 547
BmuI ACTGGG 1 cut(s) 373
BoxI GACNNNNGTC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 35, 306
BsaWI WCCGGW 2 cut(s) 190, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 287, 367
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 258, 368
BseDI CCNNGG 2 cut(s) 35, 306
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 41, 287, 367
BseNI ACTGG 2 cut(s) 258, 368
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 6 cut(s) 193, 196, 491, 523, 547, 550
BseYI CCCAGC 2 cut(s) 40, 202
BshNI GGYRCC 1 cut(s) 665
BshTI ACCGGT 1 cut(s) 190
BsiSI CCGG 3 cut(s) 131, 191, 669
BslFI GGGAC 3 cut(s) 108, 161, 185
BslI CCNNNNNNNGG 3 cut(s) 41, 287, 367
BsmAI GTCTC 3 cut(s) 45, 110, 480
BsmFI GGGAC 3 cut(s) 108, 161, 185
Bsp143I GATC 3 cut(s) 3, 8, 574
BspACI CCGC 2 cut(s) 62, 461
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 667
BspPI GGATC 2 cut(s) 16, 569
BspT107I GGYRCC 1 cut(s) 665
BsrBI CCGCTC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 2 cut(s) 258, 368
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 35, 306
BssMI GATC 3 cut(s) 3, 8, 574
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 152, 282, 487
Bst6I CTCTTC 1 cut(s) 483
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 342, 497
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 6, 11, 577
BstMAI GTCTC 3 cut(s) 45, 110, 480
BstMBI GATC 3 cut(s) 3, 8, 574
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 173
BstPAI GACNNNNGTC 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 193, 196, 491, 523, 547, 550
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuI GTATCC 1 cut(s) 539
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 190
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 283, 645
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 3 cut(s) 127, 170, 610
CviQI GTAC 2 cut(s) 283, 645
DdeI CTNAG 2 cut(s) 342, 497
DpnI GATC 3 cut(s) 5, 10, 576
DpnII GATC 3 cut(s) 3, 8, 574
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EciI GGCGGA 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 306
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 130, 173, 613
FaiI YATR 8 cut(s) 128, 171, 261, 267, 429, 447, 611, 624
FaqI GGGAC 3 cut(s) 108, 161, 185
FatI CATG 3 cut(s) 126, 169, 609
Fnu4HI GCNGC 6 cut(s) 207, 210, 505, 537, 561, 564
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 6 cut(s) 207, 210, 505, 537, 561, 564
FspBI CTAG 2 cut(s) 95, 519
GluI GCNGC 6 cut(s) 207, 210, 505, 537, 561, 564
GsaI CCCAGC 2 cut(s) 44, 206
GsuI CTGGAG 1 cut(s) 529
HapII CCGG 3 cut(s) 131, 191, 669
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 130, 173, 613
HindIII AAGCTT 2 cut(s) 110, 528
HinfI GANTC 1 cut(s) 53
HpaII CCGG 3 cut(s) 131, 191, 669
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 6 cut(s) 8, 26, 165, 227, 241, 556
Hpy188III TCNNGA 3 cut(s) 50, 217, 610
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 3 cut(s) 152, 282, 487
HpyCH4IV ACGT 1 cut(s) 643
HpyCH4V TGCA 5 cut(s) 314, 354, 375, 398, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 2 cut(s) 342, 497
HpySE526I ACGT 1 cut(s) 643
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 130, 173, 613
Kzo9I GATC 3 cut(s) 3, 8, 574
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 6 cut(s) 193, 196, 491, 523, 547, 550
LweI GCATC 3 cut(s) 301, 413, 547
MaeI CTAG 2 cut(s) 95, 519
MaeII ACGT 1 cut(s) 643
MalI GATC 3 cut(s) 5, 10, 576
MbiI CCGCTC 1 cut(s) 64
MboI GATC 3 cut(s) 3, 8, 574
MboII GAAGA 4 cut(s) 3, 118, 461, 470
MflI RGATCY 1 cut(s) 8
MluCI AATT 2 cut(s) 384, 455
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 89, 247, 281, 323, 361, 427
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 131, 191, 669
MwoI GCNNNNNNNGC 1 cut(s) 536
NdeII GATC 3 cut(s) 3, 8, 574
NlaIII CATG 3 cut(s) 130, 173, 613
NlaIV GGNNCC 1 cut(s) 667
NspI RCATGY 1 cut(s) 173
PagI TCATGA 1 cut(s) 609
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 6 cut(s) 208, 211, 506, 538, 562, 565
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 153
PspFI CCCAGC 2 cut(s) 40, 202
PspN4I GGNNCC 1 cut(s) 667
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 284, 646
RsaNI GTAC 2 cut(s) 283, 645
SatI GCNGC 6 cut(s) 207, 210, 505, 537, 561, 564
Sau3AI GATC 3 cut(s) 3, 8, 574
SchI GAGTC 1 cut(s) 47
SfaNI GCATC 3 cut(s) 301, 413, 547
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 384, 455
SsiI CCGC 2 cut(s) 62, 461
SspMI CTAG 2 cut(s) 95, 519
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 152, 282, 487
TaiI ACGT 1 cut(s) 646
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 384, 455
TscAI CASTG 1 cut(s) 368
TseI GCWGC 6 cut(s) 206, 209, 504, 536, 560, 563
TspDTI ATGAA 3 cut(s) 462, 468, 626
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 368
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 95, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.