RchiOBHm_Chr6g0254491

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002979
Physical Location & Seq
Forward (+)
9534539 .. 9539230
4692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22829

Sequence Viewer

Length: 873 bp
ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCCGCCGGAGCCGAGTTGTTCTCCGACGGACGCCGCGGCCTTCGAATCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGTGGGAGAAAAAGCTTGAGACTTGTCACATGCCGGAGATGATATTTGGGGAGAGTTGTTTGGTTCTGAAGCATGTGAAGAGTGGCACCACTATTCACTTCAATGCTTTTGATGCTCTGATTGGGTGGAAGAAGGAGGCTTTGCCTCCAGTTGAAGTCCCAGCTGCTGCTCAGTGGAAGTTCAGATGTAAACCCTCTGAGCAAGTGATACTGGATTATGACTATACATTCACAACACCGTACGGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACGAAGGAGGAGAGGTATCTAAGGAGACCTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTGGCATCTAAAGAGCCTATTCTCTTTTATGACGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTTTAACTGTAAAAGTGAGAGTCATGCCGAGCGGTTGGTTTCTTCTCTTGCGTTTTTGGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGCATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACATTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGAAGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAGCAAGACCCAAAAGCTAAAGGTATCTAGTAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

290

Amino Acids

32.96

Weight (kDa)

5.48

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 252 6.8e-57 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 2 cut(s) 111, 606
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 69
AciI CCGC 7 cut(s) 36, 67, 69, 109, 557, 606, 673
AclWI GGATC 1 cut(s) 791
AcuI CTGAAG 2 cut(s) 227, 798
AcyI GRCGYC 1 cut(s) 64
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 88, 383, 463
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 241, 293, 749
AluBI AGCT 8 cut(s) 28, 154, 302, 726, 740, 752, 782, 850
AluI AGCT 8 cut(s) 28, 154, 302, 726, 740, 752, 782, 850
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 4 cut(s) 92, 152, 437, 576
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 6 cut(s) 302, 305, 726, 758, 782, 785
AsuII TTCGAA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 6 cut(s) 289, 292, 713, 745, 769, 772
BccI CCATC 1 cut(s) 638
BceAI ACGGC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 708, 742
BciVI GTATCC 2 cut(s) 661, 761
BcoDI GTCTC 4 cut(s) 92, 152, 437, 576
BfaI CTAG 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 2 cut(s) 661, 761
BisI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 727, 759, 783, 786
BlsI GCNGC 9 cut(s) 37, 68, 71, 304, 307, 728, 760, 784, 787
BmiI GGNNCC 2 cut(s) 43, 226
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 3 cut(s) 241, 397, 509
BmuI ACTGGG 1 cut(s) 469
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 2 cut(s) 270, 751
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 3 cut(s) 67, 82, 402
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 684, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 383, 463
Bse1I ACTGG 3 cut(s) 287, 354, 464
BseDI CCNNGG 3 cut(s) 67, 82, 402
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BseMII CTCAG 2 cut(s) 323, 327
BseNI ACTGG 3 cut(s) 287, 354, 464
BseRI GAGGAG 2 cut(s) 115, 441
BseXI GCAGC 6 cut(s) 289, 292, 713, 745, 769, 772
BseYI CCCAGC 2 cut(s) 87, 298
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 2 cut(s) 39, 173
BsiWI CGTACG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 88, 383, 463
BsmAI GTCTC 4 cut(s) 92, 152, 437, 576
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 796
BspACI CCGC 7 cut(s) 36, 67, 69, 109, 557, 606, 673
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 322, 328
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 43, 226
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 1 cut(s) 791
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 2 cut(s) 111, 606
BsrI ACTGG 3 cut(s) 287, 354, 464
BssECI CCNNGG 3 cut(s) 67, 82, 402
BssMI GATC 1 cut(s) 796
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 141, 378, 583, 683
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 677
BstDEI CTNAG 4 cut(s) 309, 336, 438, 635
BstDSI CCRYGG 2 cut(s) 67, 82
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 799
BstMAI GTCTC 4 cut(s) 92, 152, 437, 576
BstMBI GATC 1 cut(s) 796
BstMWI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
BstNSI RCATGY 4 cut(s) 172, 215, 679, 871
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 6 cut(s) 289, 292, 713, 745, 769, 772
BsuI GTATCC 2 cut(s) 661, 761
BsuRI GGCC 1 cut(s) 72
BtgI CCRYGG 2 cut(s) 67, 82
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 317, 457, 679
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 677
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 831
Cfr42I CCGCGG 1 cut(s) 70
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 379
CviAII CATG 6 cut(s) 169, 212, 598, 676, 832, 868
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 4 cut(s) 309, 336, 438, 635
DpnI GATC 1 cut(s) 798
DpnII GATC 1 cut(s) 796
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 227, 798
EcoICRI GAGCTC 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 172, 215, 601, 679, 835, 871
FaqI GGGAC 1 cut(s) 281
FatI CATG 6 cut(s) 168, 211, 597, 675, 831, 867
FauI CCCGC 1 cut(s) 680
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 727, 759, 783, 786
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 727, 759, 783, 786
FspBI CTAG 1 cut(s) 861
GluI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 727, 759, 783, 786
GsaI CCCAGC 2 cut(s) 91, 302
GsuI CTGGAG 2 cut(s) 270, 751
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 39, 173
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 6 cut(s) 172, 215, 601, 679, 835, 871
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 152, 750
HinfI GANTC 3 cut(s) 78, 100, 594
HpaII CCGG 2 cut(s) 39, 173
Hpy166II GTNNAC 2 cut(s) 16, 329
Hpy188I TCNGA 6 cut(s) 58, 207, 258, 323, 337, 778
Hpy188III TCNNGA 3 cut(s) 97, 719, 832
Hpy8I GTNNAC 2 cut(s) 16, 329
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 5 cut(s) 16, 83, 265, 416, 783
HpyCH4III ACNGT 4 cut(s) 141, 378, 583, 683
HpyCH4V TGCA 6 cut(s) 410, 450, 471, 494, 679, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
HpyF3I CTNAG 4 cut(s) 309, 336, 438, 635
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 6 cut(s) 172, 215, 601, 679, 835, 871
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 796
LmnI GCTCC 3 cut(s) 25, 41, 116
Lsp1109I GCAGC 6 cut(s) 289, 292, 713, 745, 769, 772
LweI GCATC 3 cut(s) 241, 397, 509
MaeI CTAG 1 cut(s) 861
MaeIII GTNAC 2 cut(s) 164, 863
MalI GATC 1 cut(s) 798
MbiI CCGCTC 2 cut(s) 111, 606
MboI GATC 1 cut(s) 796
MboII GAAGA 5 cut(s) 229, 280, 557, 608, 707
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 480, 551
MlyI GAGTC 2 cut(s) 94, 603
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 2 cut(s) 578, 662
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 69, 302
MspI CCGG 2 cut(s) 39, 173
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
NdeII GATC 1 cut(s) 796
NlaIII CATG 6 cut(s) 172, 215, 601, 679, 835, 871
NlaIV GGNNCC 2 cut(s) 43, 226
NmeAIII GCCGAG 2 cut(s) 70, 627
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 4 cut(s) 172, 215, 679, 871
NspV TTCGAA 1 cut(s) 76
PaeI GCATGC 1 cut(s) 679
PagI TCATGA 1 cut(s) 831
PciI ACATGT 1 cut(s) 867
PfeI GAWTC 1 cut(s) 78
Pfl23II CGTACG 1 cut(s) 378
PkrI GCNGC 9 cut(s) 37, 68, 71, 304, 307, 728, 760, 784, 787
PleI GAGTC 2 cut(s) 94, 602
PpsI GAGTC 2 cut(s) 94, 602
PscI ACATGT 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 2 cut(s) 87, 298
PspLI CGTACG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 43, 226
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 70
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 578, 662
SatI GCNGC 9 cut(s) 36, 67, 70, 303, 306, 727, 759, 783, 786
Sau3AI GATC 1 cut(s) 796
SchI GAGTC 2 cut(s) 94, 603
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 3 cut(s) 241, 397, 509
Sfr303I CCGCGG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SphI GCATGC 1 cut(s) 679
Sse9I AATT 2 cut(s) 480, 551
SsiI CCGC 7 cut(s) 36, 67, 69, 109, 557, 606, 673
SspMI CTAG 1 cut(s) 861
SstI GAGCTC 1 cut(s) 30
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 4 cut(s) 141, 378, 583, 683
TaqI TCGA 4 cut(s) 15, 76, 96, 718
TasI AATT 2 cut(s) 480, 551
TauI GCSGC 3 cut(s) 38, 69, 72
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 578, 662
Tru9I TTAA 2 cut(s) 578, 662
TscAI CASTG 3 cut(s) 317, 464, 686
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 6 cut(s) 302, 305, 726, 758, 782, 785
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 558, 564
TspGWI ACGGA 2 cut(s) 75, 396
TspRI CASTG 3 cut(s) 317, 464, 686
XceI RCATGY 4 cut(s) 172, 215, 679, 871
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.