RLG00000014910

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002979
Physical Location & Seq
Reverse (-)
59376976 .. 59381192
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014910

Sequence Viewer

Length: 705 bp
ATGGAAATAGAGGTGGACGAAGCCGGTGGACCTGAGTTGTTCTCCGACGGACGCCACGGCCTTCGAATCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGGTTTCCTTTGCAGGTGGGGAGAAGAAGCTTGAGACTTGTCACATACCGGAGATGATAGTTGGGGACAGTTGTCTGGTTCTGAAGCATGTGAAAAAGTGGTTGCCACCGGTTGAAGTCCCAGCTGCAGCTCAGTGGAAGTTGAGATGTAAACCCTCCGAGCAAGTATTACTGGACTATGACTATACATTCACAACACCGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACAAAGGAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCAGATAATGGTGTGTCTCTTCTAACTGTGAAAGTGAGGGTCATGCCGAGCAGTTGGTTTCTTCTCTTACGATTTTGGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGACGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGGTATCTAGTAACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

235

Amino Acids

26.42

Weight (kDa)

5.77

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 70 - 170 3e-28 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 3 cut(s) 76, 127, 332
AflIII ACRYGT 1 cut(s) 699
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 2 cut(s) 242, 581
AluBI AGCT 7 cut(s) 157, 251, 257, 558, 572, 584, 682
AluI AGCT 7 cut(s) 157, 251, 257, 558, 572, 584, 682
Alw26I GTCTC 3 cut(s) 80, 155, 453
AlwI GGATC 1 cut(s) 623
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 6 cut(s) 251, 254, 558, 590, 614, 617
AsiGI ACCGGT 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 29
BbvI GCAGC 6 cut(s) 238, 266, 545, 577, 601, 604
BceAI ACGGC 2 cut(s) 73, 88
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciVI GTATCC 1 cut(s) 593
BcoDI GTCTC 3 cut(s) 80, 155, 453
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 1 cut(s) 593
BisI GCNGC 6 cut(s) 252, 255, 559, 591, 615, 618
BlsI GCNGC 6 cut(s) 253, 256, 560, 592, 616, 619
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 2 cut(s) 346, 386
BoxI GACNNNNGTC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 583
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 3 cut(s) 55, 70, 351
BsaWI WCCGGW 2 cut(s) 175, 235
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 127, 332
Bse118I RCCGGY 2 cut(s) 23, 235
Bse1I ACTGG 2 cut(s) 132, 303
BseDI CCNNGG 3 cut(s) 55, 70, 351
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 76, 127, 332
BseMII CTCAG 2 cut(s) 24, 272
BseNI ACTGG 2 cut(s) 132, 303
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 6 cut(s) 238, 266, 545, 577, 601, 604
BseYI CCCAGC 2 cut(s) 75, 247
BshFI GGCC 1 cut(s) 60
BshTI ACCGGT 1 cut(s) 235
BsiSI CCGG 3 cut(s) 24, 176, 236
BslFI GGGAC 2 cut(s) 206, 230
BslI CCNNNNNNNGG 3 cut(s) 76, 127, 332
BsmAI GTCTC 3 cut(s) 80, 155, 453
BsmFI GGGAC 2 cut(s) 206, 230
BsnI GGCC 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 628
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 25, 271
BspHI TCATGA 1 cut(s) 663
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 623
BspT104I TTCGAA 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 23, 235
BsrI ACTGG 2 cut(s) 132, 303
BssAI RCCGGY 2 cut(s) 23, 235
BssECI CCNNGG 3 cut(s) 55, 70, 351
BssMI GATC 1 cut(s) 628
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 4 cut(s) 197, 327, 460, 515
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 52
BstBI TTCGAA 1 cut(s) 64
BstDEI CTNAG 2 cut(s) 33, 258
BstDSI CCRYGG 2 cut(s) 55, 70
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 3 cut(s) 80, 155, 453
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNSI RCATGY 2 cut(s) 218, 703
BstPAI GACNNNNGTC 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 6 cut(s) 238, 266, 545, 577, 601, 604
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 2 cut(s) 55, 70
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 266, 511
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 663
Cfr10I RCCGGY 2 cut(s) 23, 235
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 2 cut(s) 60, 620
Csp6I GTAC 1 cut(s) 328
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 4 cut(s) 215, 475, 664, 700
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 33, 258
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 4 cut(s) 218, 478, 667, 703
FaqI GGGAC 2 cut(s) 206, 230
FatI CATG 4 cut(s) 214, 474, 663, 699
Fnu4HI GCNGC 6 cut(s) 252, 255, 559, 591, 615, 618
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 6 cut(s) 252, 255, 559, 591, 615, 618
FspBI CTAG 1 cut(s) 693
GluI GCNGC 6 cut(s) 252, 255, 559, 591, 615, 618
GsaI CCCAGC 2 cut(s) 79, 251
GsuI CTGGAG 1 cut(s) 583
HaeIII GGCC 1 cut(s) 60
HapII CCGG 3 cut(s) 24, 176, 236
HgaI GACGC 2 cut(s) 60, 620
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 218, 478, 667, 703
HindIII AAGCTT 2 cut(s) 155, 582
HinfI GANTC 2 cut(s) 66, 88
HpaII CCGG 3 cut(s) 24, 176, 236
Hpy166II GTNNAC 3 cut(s) 16, 29, 278
Hpy188I TCNGA 4 cut(s) 46, 210, 286, 610
Hpy188III TCNNGA 3 cut(s) 85, 551, 664
Hpy8I GTNNAC 3 cut(s) 16, 29, 278
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 71, 615
HpyCH4III ACNGT 4 cut(s) 197, 327, 460, 515
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 4 cut(s) 140, 254, 359, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 2 cut(s) 33, 258
HpySE526I ACGT 1 cut(s) 575
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 218, 478, 667, 703
Kzo9I GATC 1 cut(s) 628
LmnI GCTCC 2 cut(s) 104, 374
Lsp1109I GCAGC 6 cut(s) 238, 266, 545, 577, 601, 604
LweI GCATC 2 cut(s) 346, 386
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 2 cut(s) 167, 695
MalI GATC 1 cut(s) 630
MbiI CCGCTC 1 cut(s) 99
MboI GATC 1 cut(s) 628
MboII GAAGA 5 cut(s) 163, 434, 443, 485, 539
MluCI AATT 1 cut(s) 428
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 4, 124, 292, 326, 400, 462
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 24, 176, 236
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 1 cut(s) 628
NlaIII CATG 4 cut(s) 218, 478, 667, 703
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 2 cut(s) 218, 703
NspV TTCGAA 1 cut(s) 64
PagI TCATGA 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 131
PciI ACATGT 1 cut(s) 699
PfeI GAWTC 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 127
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 6 cut(s) 253, 256, 560, 592, 616, 619
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PscI ACATGT 1 cut(s) 699
PshAI GACNNNNGTC 1 cut(s) 198
PspFI CCCAGC 2 cut(s) 75, 247
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SatI GCNGC 6 cut(s) 252, 255, 559, 591, 615, 618
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 346, 386
SfcI CTRYAG 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 428
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 693
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 4 cut(s) 197, 327, 460, 515
TaiI ACGT 1 cut(s) 578
TaqI TCGA 3 cut(s) 64, 84, 550
TasI AATT 1 cut(s) 428
TfiI GAWTC 1 cut(s) 66
TscAI CASTG 2 cut(s) 266, 518
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 6 cut(s) 251, 254, 558, 590, 614, 617
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 435, 441, 680
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 266, 518
Van91I CCANNNNNTGG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 29
XceI RCATGY 2 cut(s) 218, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.