Rroxscaffold_7G00210760

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002979
Physical Location & Seq
Reverse (-)
61215961 .. 61221748
5788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210760.1

Sequence Viewer

Length: 693 bp
ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCCGCCGGAGCCGAGTTGTTCGCCGAAGGACGCCGCGGCCTTCGAATACACACGGCTGGGAAATCGAGACTCGAAACCGCTCCATTCTCAAATCGAGGTTCTCTCATCGCTATGAGTCACAAAGGAGGAGAGATATCTAAGGAGAACTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGAAGTCTTGTATGAAGATGAATTGGAGGATAATGGTGTGTCTCTTCTAACTGTGAAAGTGAAGGGATACCCTTCTGACGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTAGTCATGAATAAGACCCATAAGCTAAAGCCTAAGTCAGGAGCGAGGAAAAGAGGAGGAAACAACGAGAAAAAGAAGAGGAGGAGCAGCCATGGCCGAACAATGGGTGCCCGAGCATTTCGGGTAGTGATGAGATCGGCGCGTGAGGTGGGTTTCGGCGTCACGGACGACGTGAAGGACGGACAGGATTTGTCGGAGACTAGTGGTGGTGGTGGGATAGGCTTCCGGGTTTCGGGGTGCAAGAAGAAACGGGGAGAAGATGGGGTGGTGTTGGGTACGTGGGGATTATGGAAGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

230

Amino Acids

25.29

Weight (kDa)

9.38

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 55 - 112 4.7e-14 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 69, 529
AciI CCGC 4 cut(s) 36, 67, 69, 111
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 481
AcyI GRCGYC 2 cut(s) 64, 546
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 4 cut(s) 196, 425, 490, 619
AhlI ACTAGT 1 cut(s) 587
AjiI CACGTC 1 cut(s) 559
AluBI AGCT 2 cut(s) 28, 412
AluI AGCT 2 cut(s) 28, 412
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 94, 309, 578
AlwI GGATC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 2 cut(s) 70, 481
ApeKI GCWGC 3 cut(s) 344, 347, 474
AspLEI GCGC 1 cut(s) 529
AsuC2I CCSGG 1 cut(s) 614
AsuII TTCGAA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 331, 334, 486
BccI CCATC 1 cut(s) 641
BceAI ACGGC 1 cut(s) 102
BciVI GTATCC 1 cut(s) 323
BcnI CCSGG 1 cut(s) 614
BcoDI GTCTC 3 cut(s) 94, 309, 578
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 387
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 6 cut(s) 36, 67, 70, 345, 348, 475
BlsI GCNGC 6 cut(s) 37, 68, 71, 346, 349, 476
Bme1390I CCNGG 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 559
BmiI GGNNCC 2 cut(s) 43, 496
BmrFI CCNGG 1 cut(s) 614
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 120, 152
Bpu14I TTCGAA 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 614
BsaAI YACGTR 1 cut(s) 666
BsaHI GRCGYC 2 cut(s) 64, 546
BsaJI CCNNGG 2 cut(s) 67, 478
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 425, 490, 619
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 67, 478
BseLI CCNNNNNNNGG 4 cut(s) 196, 425, 490, 619
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 4 cut(s) 174, 456, 481, 484
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 3 cut(s) 331, 334, 486
BseYI CCCAGC 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 69, 529
BshFI GGCC 2 cut(s) 72, 483
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 2 cut(s) 39, 613
BslI CCNNNNNNNGG 4 cut(s) 196, 425, 490, 619
BsmAI GTCTC 3 cut(s) 94, 309, 578
BsnI GGCC 2 cut(s) 72, 483
BsoBI CYCGRG 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 30, 499
Bsp143I GATC 2 cut(s) 358, 521
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 4 cut(s) 36, 67, 69, 111
BspANI GGCC 2 cut(s) 72, 483
BspFNI CGCG 2 cut(s) 69, 529
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 43, 496
BspPI GGATC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 67, 478
BssMI GATC 2 cut(s) 358, 521
BssNI GRCGYC 2 cut(s) 64, 546
BssT1I CCWWGG 1 cut(s) 478
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 312, 458
BstACI GRCGYC 2 cut(s) 64, 546
BstBAI YACGTR 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 171, 420
BstDSI CCRYGG 2 cut(s) 67, 478
BstENI CCTNNNNNAGG 1 cut(s) 423
BstFNI CGCG 2 cut(s) 69, 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 2 cut(s) 361, 524
BstMAI GTCTC 3 cut(s) 94, 309, 578
BstMBI GATC 2 cut(s) 358, 521
BstMWI GCNNNNNNNGC 2 cut(s) 41, 480
BstSCI CCNGG 1 cut(s) 612
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 2 cut(s) 69, 529
BstV1I GCAGC 3 cut(s) 331, 334, 486
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 2 cut(s) 72, 483
BtgI CCRYGG 2 cut(s) 67, 478
BtgZI GCGATG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 190
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 529
Cfr42I CCGCGG 1 cut(s) 70
CseI GACGC 3 cut(s) 72, 350, 535
Csp6I GTAC 1 cut(s) 663
CviAII CATG 2 cut(s) 394, 479
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 2 cut(s) 171, 420
DpnI GATC 2 cut(s) 360, 523
DpnII GATC 2 cut(s) 358, 521
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 2 cut(s) 312, 458
EarI CTCTTC 2 cut(s) 312, 458
Ecl136II GAGCTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 2 cut(s) 397, 482
FaiI YATR 7 cut(s) 146, 258, 276, 395, 408, 480, 676
FatI CATG 2 cut(s) 393, 478
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 6 cut(s) 36, 67, 70, 345, 348, 475
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 6 cut(s) 36, 67, 70, 345, 348, 475
FspBI CTAG 1 cut(s) 588
GlaI GCGC 1 cut(s) 528
GluI GCNGC 6 cut(s) 36, 67, 70, 345, 348, 475
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 72, 483
HapII CCGG 2 cut(s) 39, 613
HgaI GACGC 3 cut(s) 72, 350, 535
HhaI GCGC 1 cut(s) 529
Hin1I GRCGYC 2 cut(s) 64, 546
Hin1II CATG 2 cut(s) 397, 482
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 2 cut(s) 102, 148
HpaII CCGG 2 cut(s) 39, 613
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 340, 583
Hpy188III TCNNGA 3 cut(s) 99, 394, 426
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 20, 560
HpyAV CCTTC 6 cut(s) 16, 53, 83, 319, 345, 556
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 558, 665
HpyCH4V TGCA 4 cut(s) 183, 204, 227, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 480
HpyF3I CTNAG 2 cut(s) 171, 420
HpySE526I ACGT 2 cut(s) 558, 665
Hsp92I GRCGYC 2 cut(s) 64, 546
Hsp92II CATG 2 cut(s) 397, 482
HspAI GCGC 1 cut(s) 527
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 358, 521
LmnI GCTCC 5 cut(s) 25, 41, 118, 428, 471
LpnPI CCDG 7 cut(s) 52, 75, 178, 399, 411, 557, 626
Lsp1109I GCAGC 3 cut(s) 331, 334, 486
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 558, 665
MaeIII GTNAC 2 cut(s) 149, 547
MalI GATC 2 cut(s) 360, 523
MbiI CCGCTC 1 cut(s) 113
MboI GATC 2 cut(s) 358, 521
MboII GAAGA 6 cut(s) 290, 299, 475, 643, 656, 691
MhlI GDGCHC 2 cut(s) 30, 499
MluCI AATT 2 cut(s) 213, 284
MlyI GAGTC 2 cut(s) 96, 157
MmeI TCCRAC 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 2 cut(s) 39, 613
MspR9I CCNGG 1 cut(s) 614
MvnI CGCG 2 cut(s) 69, 529
MwoI GCNNNNNNNGC 2 cut(s) 41, 480
NciI CCSGG 1 cut(s) 614
NcoI CCATGG 1 cut(s) 478
NdeII GATC 2 cut(s) 358, 521
NlaIII CATG 2 cut(s) 397, 482
NlaIV GGNNCC 2 cut(s) 43, 496
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 149, 547
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 393
PkrI GCNGC 6 cut(s) 37, 68, 71, 346, 349, 476
PleI GAGTC 2 cut(s) 96, 156
PpsI GAGTC 2 cut(s) 96, 156
Ppu21I YACGTR 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 43, 496
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 70
SalI GTCGAC 1 cut(s) 14
SatI GCNGC 6 cut(s) 36, 67, 70, 345, 348, 475
Sau3AI GATC 2 cut(s) 358, 521
SchI GAGTC 2 cut(s) 96, 157
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 2 cut(s) 30, 499
SetI ASST 7 cut(s) 15, 30, 133, 414, 537, 561, 668
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 387
Sfr303I CCGCGG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 587
Sse9I AATT 2 cut(s) 213, 284
SsiI CCGC 4 cut(s) 36, 67, 69, 111
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 561, 668
TaqI TCGA 5 cut(s) 15, 76, 98, 105, 127
TasI AATT 2 cut(s) 213, 284
TauI GCSGC 3 cut(s) 38, 69, 72
TscAI CASTG 1 cut(s) 197
TseFI GTSAC 2 cut(s) 149, 547
TseI GCWGC 3 cut(s) 344, 347, 474
Tsp45I GTSAC 2 cut(s) 149, 547
TspDTI ATGAA 3 cut(s) 291, 297, 410
TspGWI ACGGA 2 cut(s) 566, 582
TspRI CASTG 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 423
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.