Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004702.1

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

27319 .. 33524

Gene Structure 6206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004702.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggaaatagaggtggacgagaaagccgctggacctgagttgttctccgacggacgccacggctgggaaatcgagactcgcaaccgctccattctcaactcctccacccacgaactgtgggagaagaagcttgagactcgtcccatgccggagatgatatttggggacagttgtctggttctgaagcatgtgaaaaagtggttgccaccggttgaagtcccagctgctgctctctggaagttcagatgtaaaccctctgagcaagtaatactggactatgactatacattcacaacacctggtgcgtcgtcatgtgtaagcttcatggagaaagtgcaaagttgtggcagaatcggcttagggaggctggggctgagttgggcgactccatctgggtgccttgcttcggtgatttggatggaaaggaataaaaggatctacgatgaccataatggaatgcgagtggaggacctttgggtgaaggttagattcccatcagctttatgggcttcagttttggactgcaaagaaaaaattgatgtggttgcattagcatctaaagagcctattatcttttatgatgaggtagtcttgtatgaagatgaattggcggataatggtgcgtctcttctaactgtaaaagtgcttagagttgatggagtgcttatgagattaagggatacccaagctaggtttcaagctttggctgcaaagggatacccttctgacgctgctgcctacaatgatccaagtatcatcagccaaaggcttcctgtggtcatgaataagacccataagctaaagcctaagtcaggttgtttaactacaaaactcagtgttttggattacaacctagatgtggaatctttaccttgcatacaacctactgaagcttttacatgtgtagatatttcccgacggaagctgcctggccacattgaatgcattacgtcgtcaagtgtgaaaggcatcatgctaaaccgtgtgatggcatcattaaatcttgctacaagtgcagtttcatatctgcttggcttgtgcacaagtgaatggggccatacgttgagcgatcgaagtgttgaagtattgaagggaaaacccatcattgacatcattctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

373

Amino Acids

41.66

Weight (kDa)

6.42

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	3 cut(s)	27, 85, 611
AclWI	GGATC	2 cut(s)	443, 740
AcoI	YGGCCR	1 cut(s)	931
AcuI	CTGAAG	3 cut(s)	203, 495, 909
AcyI	GRCGYC	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	302
AfiI	CCNNNNNNNGG	6 cut(s)	64, 406, 690, 812, 859, 988
AflIII	ACRYGT	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	215, 698, 941, 1082, 1090
AjnI	CCWGG	2 cut(s)	298, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AluBI	AGCT	9 cut(s)	130, 224, 321, 500, 689, 701, 799, 893, 925
AluI	AGCT	9 cut(s)	130, 224, 321, 500, 689, 701, 799, 893, 925
Alw21I	GWGCWC	1 cut(s)	1043
Alw26I	GTCTC	3 cut(s)	68, 128, 630
Alw44I	GTGCAC	1 cut(s)	1039
AlwI	GGATC	2 cut(s)	443, 740
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	931, 1054
ApaLI	GTGCAC	1 cut(s)	1039
ApeKI	GCWGC	6 cut(s)	224, 227, 707, 731, 734, 925
AsiGI	ACCGGT	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	32, 469, 1054
AsuHPI	GGTGA	2 cut(s)	421, 490
AvaII	GGWCC	2 cut(s)	32, 469
BaeGI	GKGCMC	1 cut(s)	1043
BalI	TGGCCA	1 cut(s)	933
BanI	GGYRCC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	1043
BbvI	GCAGC	6 cut(s)	211, 214, 694, 718, 721, 912
BccI	CCATC	6 cut(s)	397, 412, 502, 650, 982, 1109
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	300, 930
BciVI	GTATCC	2 cut(s)	673, 710
BcoDI	GTCTC	3 cut(s)	68, 128, 630
BfaI	CTAG	2 cut(s)	690, 854
BfuI	GTATCC	2 cut(s)	673, 710
BisI	GCNGC	7 cut(s)	27, 225, 228, 708, 732, 735, 926
BlsI	GCNGC	7 cut(s)	28, 226, 229, 709, 733, 736, 927
Bme1390I	CCNGG	2 cut(s)	300, 930
Bme18I	GGWCC	2 cut(s)	32, 469
BmgT120I	GGNCC	3 cut(s)	32, 469, 1054
BmiI	GGNNCC	2 cut(s)	398, 1055
BmrFI	CCNGG	2 cut(s)	300, 930
BmsI	GCATC	3 cut(s)	563, 978, 1001
BoxI	GACNNNNGTC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu10I	CCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 406, 690, 812, 859, 988
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	300, 930
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	423
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	6 cut(s)	64, 406, 690, 812, 859, 988
BseMII	CTCAG	4 cut(s)	27, 249, 365, 847
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	1043
BseXI	GCAGC	6 cut(s)	211, 214, 694, 718, 721, 912
BseYI	CCCAGC	3 cut(s)	63, 220, 367
BsgI	GTGCAG	1 cut(s)	1035
Bsh1285I	CGRYCG	1 cut(s)	1072
BshFI	GGCC	2 cut(s)	933, 1056
BshNI	GGYRCC	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	1072
BsiHKAI	GWGCWC	1 cut(s)	1043
BsiSI	CCGG	2 cut(s)	149, 209
BslFI	GGGAC	3 cut(s)	126, 179, 203
BslI	CCNNNNNNNGG	6 cut(s)	64, 406, 690, 812, 859, 988
BsmAI	GTCTC	3 cut(s)	68, 128, 630
BsmBI	CGTCTC	1 cut(s)	630
BsmFI	GGGAC	3 cut(s)	126, 179, 203
BsmI	GAATGC	2 cut(s)	462, 947
BsnI	GGCC	2 cut(s)	933, 1056
Bsp1286I	GDGCHC	1 cut(s)	1043
Bsp143I	GATC	3 cut(s)	435, 745, 1069
BspACI	CCGC	3 cut(s)	27, 85, 611
BspANI	GGCC	2 cut(s)	933, 1056
BspCNI	CTCAG	4 cut(s)	28, 250, 366, 846
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	2 cut(s)	398, 1055
BspPI	GGATC	2 cut(s)	443, 740
BspT107I	GGYRCC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	435, 745, 1069
BssNI	GRCGYC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	300, 930
Bst4CI	ACNGT	4 cut(s)	117, 170, 637, 983
Bst6I	CTCTTC	1 cut(s)	633
BstACI	GRCGYC	1 cut(s)	55
BstDEI	CTNAG	7 cut(s)	36, 258, 358, 374, 647, 807, 833
BstDSI	CCRYGG	1 cut(s)	58
BstENI	CCTNNNNNAGG	1 cut(s)	810
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	3 cut(s)	438, 748, 1072
BstMAI	GTCTC	3 cut(s)	68, 128, 630
BstMBI	GATC	3 cut(s)	435, 745, 1069
BstMCI	CGRYCG	1 cut(s)	1072
BstMWI	GCNNNNNNNGC	4 cut(s)	354, 506, 707, 1013
BstNI	CCWGG	2 cut(s)	300, 930
BstNSI	RCATGY	2 cut(s)	191, 903
BstPAI	GACNNNNGTC	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	298, 928
BstSLI	GKGCMC	1 cut(s)	1043
BstV1I	GCAGC	6 cut(s)	211, 214, 694, 718, 721, 912
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuI	GTATCC	2 cut(s)	673, 710
BsuRI	GGCC	2 cut(s)	933, 1056
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	841
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	780
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	32, 469, 1054
CseI	GACGC	4 cut(s)	63, 294, 612, 737
CsiI	ACCWGGT	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	7 cut(s)	145, 188, 312, 325, 781, 900, 973
DdeI	CTNAG	7 cut(s)	36, 258, 358, 374, 647, 807, 833
DpnI	GATC	3 cut(s)	437, 747, 1071
DpnII	GATC	3 cut(s)	435, 745, 1069
DraIII	CACNNNGTG	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	931
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
EciI	GGCGGA	1 cut(s)	626
Eco47I	GGWCC	2 cut(s)	32, 469
Eco57I	CTGAAG	3 cut(s)	203, 495, 909
EcoNI	CCTNNNNNAGG	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	298, 928
EcoT22I	ATGCAT	1 cut(s)	947
Esp3I	CGTCTC	1 cut(s)	630
FaeI	CATG	7 cut(s)	148, 191, 315, 328, 784, 903, 976
FaqI	GGGAC	3 cut(s)	126, 179, 203
FatI	CATG	7 cut(s)	144, 187, 311, 324, 780, 899, 972
Fnu4HI	GCNGC	7 cut(s)	27, 225, 228, 708, 732, 735, 926
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	7 cut(s)	27, 225, 228, 708, 732, 735, 926
FspBI	CTAG	2 cut(s)	690, 854
GluI	GCNGC	7 cut(s)	27, 225, 228, 708, 732, 735, 926
GsaI	CCCAGC	3 cut(s)	67, 224, 371
HaeIII	GGCC	2 cut(s)	933, 1056
HapII	CCGG	2 cut(s)	149, 209
HgaI	GACGC	4 cut(s)	63, 294, 612, 737
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	7 cut(s)	148, 191, 315, 328, 784, 903, 976
HindIII	AAGCTT	4 cut(s)	128, 319, 699, 891
HinfI	GANTC	6 cut(s)	76, 136, 351, 385, 489, 863
HpaII	CCGG	2 cut(s)	149, 209
HphI	GGTGA	2 cut(s)	421, 490
Hpy166II	GTNNAC	3 cut(s)	16, 251, 1041
Hpy188I	TCNGA	5 cut(s)	49, 183, 245, 259, 727
Hpy188III	TCNNGA	4 cut(s)	73, 235, 781, 915
Hpy8I	GTNNAC	3 cut(s)	16, 251, 1041
Hpy99I	CGWCG	4 cut(s)	53, 310, 921, 955
HpyAV	CCTTC	3 cut(s)	475, 732, 1084
HpyCH4III	ACNGT	4 cut(s)	117, 170, 637, 983
HpyCH4IV	ACGT	2 cut(s)	950, 1061
HpyCH4V	TGCA	8 cut(s)	337, 525, 548, 710, 876, 945, 1016, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	354, 506, 707, 1013
HpyF3I	CTNAG	7 cut(s)	36, 258, 358, 374, 647, 807, 833
HpySE526I	ACGT	2 cut(s)	950, 1061
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	7 cut(s)	148, 191, 315, 328, 784, 903, 976
Kzo9I	GATC	3 cut(s)	435, 745, 1069
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	6 cut(s)	211, 214, 694, 718, 721, 912
LweI	GCATC	3 cut(s)	563, 978, 1001
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	690, 854
MaeII	ACGT	2 cut(s)	950, 1061
MalI	GATC	3 cut(s)	437, 747, 1071
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	435, 745, 1069
MboII	GAAGA	3 cut(s)	136, 611, 620
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	1043
MlsI	TGGCCA	1 cut(s)	933
MluCI	AATT	2 cut(s)	534, 605
MluNI	TGGCCA	1 cut(s)	933
MlyI	GAGTC	3 cut(s)	70, 130, 379
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	4, 112, 265, 357, 460, 577
Mox20I	TGGCCA	1 cut(s)	933
Mph1103I	ATGCAT	1 cut(s)	947
MscI	TGGCCA	1 cut(s)	933
MseI	TTAA	3 cut(s)	674, 821, 998
MslI	CAYNNNNRTG	1 cut(s)	394
Msp20I	TGGCCA	1 cut(s)	933
MspA1I	CMGCKG	2 cut(s)	29, 224
MspI	CCGG	2 cut(s)	149, 209
MspR9I	CCNGG	2 cut(s)	300, 930
Mva1269I	GAATGC	2 cut(s)	462, 947
MvaI	CCWGG	2 cut(s)	300, 930
MwoI	GCNNNNNNNGC	4 cut(s)	354, 506, 707, 1013
NdeII	GATC	3 cut(s)	435, 745, 1069
NlaIII	CATG	7 cut(s)	148, 191, 315, 328, 784, 903, 976
NlaIV	GGNNCC	2 cut(s)	398, 1055
NsiI	ATGCAT	1 cut(s)	947
NspI	RCATGY	2 cut(s)	191, 903
PagI	TCATGA	1 cut(s)	780
PciI	ACATGT	1 cut(s)	899
PctI	GAATGC	2 cut(s)	462, 947
PfeI	GAWTC	3 cut(s)	351, 489, 863
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	28, 226, 229, 709, 733, 736, 927
Ple19I	CGATCG	1 cut(s)	1072
PleI	GAGTC	3 cut(s)	70, 130, 379
PpsI	GAGTC	3 cut(s)	70, 130, 379
PpuMI	RGGWCCY	1 cut(s)	469
PscI	ACATGT	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	298, 928
PspFI	CCCAGC	3 cut(s)	63, 220, 367
PspGI	CCWGG	2 cut(s)	298, 928
PspN4I	GGNNCC	2 cut(s)	398, 1055
PspPI	GGNCC	3 cut(s)	32, 469, 1054
PspPPI	RGGWCCY	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	435
PvuI	CGATCG	1 cut(s)	1072
PvuII	CAGCTG	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	674, 821, 998
SatI	GCNGC	7 cut(s)	27, 225, 228, 708, 732, 735, 926
Sau3AI	GATC	3 cut(s)	435, 745, 1069
Sau96I	GGNCC	3 cut(s)	32, 469, 1054
SchI	GAGTC	3 cut(s)	70, 130, 379
ScrFI	CCNGG	2 cut(s)	300, 930
SduI	GDGCHC	1 cut(s)	1043
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	563, 978, 1001
SinI	GGWCC	2 cut(s)	32, 469
SmiMI	CAYNNNNRTG	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	534, 605
SsiI	CCGC	3 cut(s)	27, 85, 611
SspMI	CTAG	2 cut(s)	690, 854
StyD4I	CCNGG	2 cut(s)	298, 928
TaaI	ACNGT	4 cut(s)	117, 170, 637, 983
TaiI	ACGT	2 cut(s)	953, 1064
TaqI	TCGA	2 cut(s)	72, 1072
TasI	AATT	2 cut(s)	534, 605
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	351, 489, 863
Tru1I	TTAA	3 cut(s)	674, 821, 998
Tru9I	TTAA	3 cut(s)	674, 821, 998
TscAI	CASTG	1 cut(s)	841
TseI	GCWGC	6 cut(s)	224, 227, 707, 731, 734, 925
TspDTI	ATGAA	5 cut(s)	313, 612, 618, 797, 1011
TspGWI	ACGGA	2 cut(s)	66, 934
TspRI	CASTG	1 cut(s)	841
VneI	GTGCAC	1 cut(s)	1039
VpaK11BI	GGWCC	2 cut(s)	32, 469
XagI	CCTNNNNNAGG	1 cut(s)	810
XceI	RCATGY	2 cut(s)	191, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	501
XspI	CTAG	2 cut(s)	690, 854
Zsp2I	ATGCAT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.