Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Forward (+)

6090974 .. 6091396

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG059200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCCGCCGGAGCCGAGTTGTTCACCGACGGACGCCGCGGCCTTCGAATCCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGTGGGAGAAAAAGCTTGAGACTTGTCACATGCCGGAGATGATATTTGGGGAGAGTTGTTTGGTTCTGAAGCATGTGAAGAGTGGCACCACTATTCACTTCAATGCTTTTGATACTCTGATTGGGTGGAAGAAGGAAGCTTTGCCTCCAGTTGAAGTCCCACCTGTTGCTCAGTGGAAGTTCAGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

109

Amino Acids

12.64

Weight (kDa)

6.2

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	36, 67, 69, 109
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	241, 293
AluBI	AGCT	3 cut(s)	28, 154, 278
AluI	AGCT	3 cut(s)	28, 154, 278
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	92, 152
AoxI	GGCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	92, 152
BisI	GCNGC	3 cut(s)	36, 67, 70
BlsI	GCNGC	3 cut(s)	37, 68, 71
BmiI	GGNNCC	2 cut(s)	43, 226
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	67, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	67, 82
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	39, 173
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	92, 152
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	4 cut(s)	36, 67, 69, 109
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	43, 226
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	67, 82
BssNI	GRCGYC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	2 cut(s)	67, 82
BstFNI	CGCG	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	92, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	172, 215
BstUI	CGCG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	2 cut(s)	67, 82
BtsIMutI	CAGTG	1 cut(s)	317
Cfr42I	CCGCGG	1 cut(s)	70
CseI	GACGC	1 cut(s)	72
CviAII	CATG	2 cut(s)	169, 212
CviJI	RGCY	7 cut(s)	28, 35, 44, 72, 87, 154, 278
CviKI_1	RGCY	7 cut(s)	28, 35, 44, 72, 87, 154, 278
DdeI	CTNAG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	172, 215
FaiI	YATR	2 cut(s)	170, 213
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	168, 211
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	36, 67, 70
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	3 cut(s)	36, 67, 70
GluI	GCNGC	3 cut(s)	36, 67, 70
GsaI	CCCAGC	1 cut(s)	91
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	39, 173
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	172, 215
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	152, 276
HinfI	GANTC	2 cut(s)	78, 100
HpaII	CCGG	2 cut(s)	39, 173
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	16, 54
Hpy188I	TCNGA	3 cut(s)	207, 258, 323
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	16, 54
Hpy99I	CGWCG	2 cut(s)	20, 62
HpyAV	CCTTC	3 cut(s)	16, 83, 265
HpyCH4III	ACNGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	172, 215
KspI	CCGCGG	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	25, 41, 116
LpnPI	CCDG	5 cut(s)	52, 73, 186, 300, 315
MaeIII	GTNAC	1 cut(s)	164
MbiI	CCGCTC	1 cut(s)	111
MboII	GAAGA	2 cut(s)	229, 280
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	4, 136, 294
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	2 cut(s)	39, 173
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	172, 215
NlaIV	GGNNCC	2 cut(s)	43, 226
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	2 cut(s)	172, 215
NspV	TTCGAA	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	37, 68, 71
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	43, 226
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	30
SacII	CCGCGG	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	14
SatI	GCNGC	3 cut(s)	36, 67, 70
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	15, 30, 156, 280, 304
Sfr303I	CCGCGG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SsiI	CCGC	4 cut(s)	36, 67, 69, 109
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	15, 76, 96
TauI	GCSGC	3 cut(s)	38, 69, 72
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	317
XceI	RCATGY	2 cut(s)	172, 215
XmiI	GTMKAC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.