MD10G1100100.v1.1

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0002979
Physical Location & Seq
Reverse (-)
16150549 .. 16154645
4097 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1100100.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGAAGTGGAGTTCGACGAAAAGGAGCTGAAAGCCGCCGGAGCCGAGCCTTTGTCCGACGGGCGACACGGCCTCCGCATCCATGGCTGGGAAATCGAGTCCCGCAAGCGCTCCATCCTCAGCTCCTCCAATACCGAACTGTGGGAGCAAAAGCTTCAAACTTGTCACATGCCGGAGATGGTGTTTGGGGACAGTGGATTGTTCCTGAACCATGTGAAGAGCGGGGCCACGATTCACTTCAATGCATTTGATGCTCTGGTGGGGTGGAAGAAGGAAGCTCTGCCGCCGGTTGAAGTTCCTGCTGCGGCTCAATGGAAATTCCGAACTAAACCTTCCCAGCAAGTTATACTGGACTATGATTATACATTCACAACGCCGTACTCTGGAAGTGAAACCATTAAGTTTGATGCGGACAAGCTTGAAAGAGGAGAGATCTCTAAGGAGACTGGAAATCTTCATTGGGAGGACTGCAAAGAAAAAATTGATGTAGTTGCATTGGCTTCGAAAGAGCCTATTCTCTTTTATGACGAGGTGGTTTTGTATGAAGATGAATTGGCTGATAGTGGAGTGTCACTTTTAACTGTAAAAGTGAGAGTCATGCCGAGTTCTTGGTTTCTCCTCTTGCGATTTTGGCTTAGAGTTGATGGGGCACTAATGAGGCTAAGAGACACTCGAATGCATTGTTCTTTTAGCGATGATGCAAATCCCATTATTCTTCGAGAAAGCTGCTGGAGAGAAGCCACATTTCAGGCTTTAGCTGCAAAAGGATACCCTTCTGAAGATTCTGCCTACAATGATCCAAGCATCATCAGCCAAAGGCTTCCTGTGATCATGCATAAGACCCAAAAGCTAAAGGTACCTGGTAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

291

Amino Acids

33.03

Weight (kDa)

5.47

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 252 2.3e-55 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 856
AccBSI CCGCTC 1 cut(s) 222
AciI CCGC 7 cut(s) 36, 76, 103, 222, 284, 305, 410
AclWI GGATC 1 cut(s) 791
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 380, 858
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 88, 141, 383
AgsI TTSAA 4 cut(s) 158, 241, 293, 422
AjnI CCWGG 1 cut(s) 859
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 8 cut(s) 28, 123, 154, 278, 418, 726, 758, 850
AluI AGCT 8 cut(s) 28, 123, 154, 278, 418, 726, 758, 850
Alw26I GTCTC 2 cut(s) 437, 660
AlwI GGATC 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 70, 225
ApeKI GCWGC 3 cut(s) 302, 726, 758
ApoI RAATTY 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 856
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 225
AsuII TTCGAA 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 856
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 289, 713, 745
BccI CCATC 3 cut(s) 122, 172, 638
BceAI ACGGC 2 cut(s) 85, 361
BcgI CGANNNNNNTGC 4 cut(s) 483, 517, 708, 742
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 1 cut(s) 761
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 2 cut(s) 437, 660
BfoI RGCGCY 1 cut(s) 112
BfuI GTATCC 1 cut(s) 761
BglII AGATCT 1 cut(s) 432
BisI GCNGC 6 cut(s) 36, 284, 303, 306, 727, 759
BlsI GCNGC 6 cut(s) 37, 285, 304, 307, 728, 760
Bme1390I CCNGG 1 cut(s) 861
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 3 cut(s) 43, 226, 858
BmrFI CCNGG 1 cut(s) 861
BmsI GCATC 5 cut(s) 87, 241, 397, 688, 813
BpmI CTGGAG 1 cut(s) 751
Bpu10I CCTNAGC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 4 cut(s) 57, 87, 167, 197
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 141, 383
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 354, 451
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 78, 114
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 3 cut(s) 88, 141, 383
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 354, 451
BseRI GAGGAG 3 cut(s) 115, 441, 608
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 3 cut(s) 289, 713, 745
BseYI CCCAGC 2 cut(s) 87, 336
BshFI GGCC 2 cut(s) 72, 227
BshNI GGYRCC 1 cut(s) 856
BsiSI CCGG 3 cut(s) 39, 173, 287
BslFI GGGAC 2 cut(s) 85, 203
BslI CCNNNNNNNGG 3 cut(s) 88, 141, 383
BsmAI GTCTC 2 cut(s) 437, 660
BsmFI GGGAC 2 cut(s) 85, 203
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 2 cut(s) 72, 227
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 652
Bsp143I GATC 3 cut(s) 432, 796, 828
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 7 cut(s) 36, 76, 103, 222, 284, 305, 410
BspANI GGCC 2 cut(s) 72, 227
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 43, 226, 858
BspPI GGATC 1 cut(s) 791
BspQI GCTCTTC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 856
BsrBI CCGCTC 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 354, 451
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 3 cut(s) 432, 796, 828
BssT1I CCWWGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 3 cut(s) 141, 194, 583
Bst6I CTCTTC 1 cut(s) 212
BstAPI GCANNNNNTGC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 4 cut(s) 119, 438, 635, 662
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 78, 114
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 435, 799, 831
BstMAI GTCTC 2 cut(s) 437, 660
BstMBI GATC 3 cut(s) 432, 796, 828
BstMWI GCNNNNNNNGC 6 cut(s) 41, 84, 251, 631, 758, 810
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 859
BstSLI GKGCMC 1 cut(s) 652
BstV1I GCAGC 3 cut(s) 289, 713, 745
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 2 cut(s) 72, 227
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 2 cut(s) 78, 114
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 225
CsiI ACCWGGT 1 cut(s) 859
Csp6I GTAC 2 cut(s) 379, 857
CviAII CATG 5 cut(s) 83, 169, 212, 598, 832
CviQI GTAC 2 cut(s) 379, 857
DdeI CTNAG 4 cut(s) 119, 438, 635, 662
DpnI GATC 3 cut(s) 434, 798, 830
DpnII GATC 3 cut(s) 432, 796, 828
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 82
Eco47III AGCGCT 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 82
EcoT22I ATGCAT 3 cut(s) 247, 681, 837
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 5 cut(s) 86, 172, 215, 601, 835
FaqI GGGAC 2 cut(s) 85, 203
FatI CATG 5 cut(s) 82, 168, 211, 597, 831
FauI CCCGC 2 cut(s) 110, 215
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 6 cut(s) 36, 284, 303, 306, 727, 759
FokI GGATG 2 cut(s) 65, 101
Fsp4HI GCNGC 6 cut(s) 36, 284, 303, 306, 727, 759
GlaI GCGC 1 cut(s) 110
GluI GCNGC 6 cut(s) 36, 284, 303, 306, 727, 759
GsaI CCCAGC 2 cut(s) 91, 340
GsuI CTGGAG 1 cut(s) 751
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 72, 227
HapII CCGG 3 cut(s) 39, 173, 287
HhaI GCGC 1 cut(s) 111
Hin1II CATG 5 cut(s) 86, 172, 215, 601, 835
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 152, 416
HinfI GANTC 4 cut(s) 98, 232, 594, 782
HpaII CCGG 3 cut(s) 39, 173, 287
Hpy188I TCNGA 3 cut(s) 58, 323, 778
Hpy188III TCNNGA 3 cut(s) 205, 384, 719
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 3 cut(s) 265, 342, 783
HpyCH4III ACNGT 3 cut(s) 141, 194, 583
HpyCH4V TGCA 7 cut(s) 245, 471, 494, 679, 701, 761, 835
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 84, 251, 631, 758, 810
HpyF3I CTNAG 4 cut(s) 119, 438, 635, 662
Hsp92II CATG 5 cut(s) 86, 172, 215, 601, 835
HspAI GCGC 1 cut(s) 109
KpnI GGTACC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 3 cut(s) 432, 796, 828
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 5 cut(s) 25, 41, 116, 128, 145
Lsp1109I GCAGC 3 cut(s) 289, 713, 745
LweI GCATC 5 cut(s) 87, 241, 397, 688, 813
MabI ACCWGGT 1 cut(s) 859
MaeIII GTNAC 2 cut(s) 164, 570
MalI GATC 3 cut(s) 434, 798, 830
MbiI CCGCTC 1 cut(s) 222
MboI GATC 3 cut(s) 432, 796, 828
MboII GAAGA 6 cut(s) 229, 280, 446, 557, 707, 791
MflI RGATCY 1 cut(s) 432
MhlI GDGCHC 1 cut(s) 652
MluCI AATT 3 cut(s) 317, 480, 551
MlyI GAGTC 2 cut(s) 107, 603
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 8 cut(s) 83, 128, 136, 419, 457, 523, 629, 651
Mph1103I ATGCAT 3 cut(s) 247, 681, 837
MseI TTAA 2 cut(s) 399, 578
MslI CAYNNNNRTG 2 cut(s) 240, 674
MspI CCGG 3 cut(s) 39, 173, 287
MspR9I CCNGG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 6 cut(s) 41, 84, 251, 631, 758, 810
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 432, 796, 828
NlaIII CATG 5 cut(s) 86, 172, 215, 601, 835
NlaIV GGNNCC 3 cut(s) 43, 226, 858
NmeAIII GCCGAG 2 cut(s) 70, 627
NmuCI GTSAC 2 cut(s) 164, 570
NsiI ATGCAT 3 cut(s) 247, 681, 837
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 212
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 232, 782
PkrI GCNGC 6 cut(s) 37, 285, 304, 307, 728, 760
PleI GAGTC 2 cut(s) 106, 602
PpsI GAGTC 2 cut(s) 106, 602
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 2 cut(s) 87, 336
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 3 cut(s) 43, 226, 858
PspPI GGNCC 1 cut(s) 225
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 2 cut(s) 380, 858
RsaNI GTAC 2 cut(s) 379, 857
RseI CAYNNNNRTG 2 cut(s) 240, 674
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 399, 578
SatI GCNGC 6 cut(s) 36, 284, 303, 306, 727, 759
Sau3AI GATC 3 cut(s) 432, 796, 828
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 2 cut(s) 107, 603
ScrFI CCNGG 1 cut(s) 861
SduI GDGCHC 1 cut(s) 652
SexAI ACCWGGT 1 cut(s) 859
SfaNI GCATC 5 cut(s) 87, 241, 397, 688, 813
SfuI TTCGAA 1 cut(s) 503
SmiMI CAYNNNNRTG 2 cut(s) 240, 674
Sse9I AATT 3 cut(s) 317, 480, 551
SsiI CCGC 7 cut(s) 36, 76, 103, 222, 284, 305, 410
StyD4I CCNGG 1 cut(s) 859
StyI CCWWGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 141, 194, 583
TaqI TCGA 5 cut(s) 15, 96, 503, 673, 718
TasI AATT 3 cut(s) 317, 480, 551
TauI GCSGC 3 cut(s) 38, 286, 308
TfiI GAWTC 2 cut(s) 232, 782
Tru1I TTAA 2 cut(s) 399, 578
Tru9I TTAA 2 cut(s) 399, 578
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 164, 570
TseI GCWGC 3 cut(s) 302, 726, 758
Tsp45I GTSAC 2 cut(s) 164, 570
TspDTI ATGAA 3 cut(s) 446, 558, 564
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 317
XceI RCATGY 1 cut(s) 172
Zsp2I ATGCAT 3 cut(s) 247, 681, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.