Rh6BG080800

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002979
Physical Location & Seq
Reverse (-)
12569081 .. 12577257
8177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG080800.1

Sequence Viewer

Length: 594 bp
ATGGAGAAGAGAGAACAGAGAGAGAAGGGCAAGAGAGAGAAGAGAGAAGTCAAGCCAAAGGATCACGCACGGCTGGGAAATCGAGACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTGCAGTGTGGGAGAAGAAGCTTGAGACTTTCCCAGCTGCTGCTCTCTGGAAGTTCAGATGTAAACCCTCCGAGCAAGGAATACTGGACTATGACTATACATTCACAACACTGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACAAAGGAGGTGAGATATCTAAGGAGAACTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGCTTAGAAGCTGCTGGAGAGAAGCTAGGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGACGCTACTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

197

Amino Acids

22.76

Weight (kDa)

8.56

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 47 - 150 1.7e-22 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 2 cut(s) 95, 416
AclWI GGATC 2 cut(s) 69, 524
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 482
AluBI AGCT 6 cut(s) 145, 161, 459, 473, 485, 583
AluI AGCT 6 cut(s) 145, 161, 459, 473, 485, 583
Alw26I GTCTC 3 cut(s) 78, 143, 435
AlwI GGATC 2 cut(s) 69, 524
AlwNI CAGNNNCTG 1 cut(s) 164
ApeKI GCWGC 4 cut(s) 161, 164, 459, 491
AsuHPI GGTGA 1 cut(s) 299
BbvI GCAGC 4 cut(s) 148, 151, 446, 478
BceAI ACGGC 1 cut(s) 86
BciVI GTATCC 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 78, 143, 435
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 494
BisI GCNGC 4 cut(s) 162, 165, 460, 492
BlsI GCNGC 4 cut(s) 163, 166, 461, 493
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 2 cut(s) 256, 368
BmuI ACTGGG 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 213, 323
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 213, 323
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 4 cut(s) 148, 151, 446, 478
BseYI CCCAGC 2 cut(s) 73, 157
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 3 cut(s) 78, 143, 435
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 2 cut(s) 61, 529
BspACI CCGC 2 cut(s) 95, 416
BspHI TCATGA 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 69, 524
BsrBI CCGCTC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 2 cut(s) 213, 323
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 61, 529
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 237, 442
Bst6I CTCTTC 3 cut(s) 2, 35, 438
BstAUI TGTACA 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 297, 452
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 64, 532
BstMAI GTCTC 3 cut(s) 78, 143, 435
BstMBI GATC 2 cut(s) 61, 529
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 148, 151, 446, 478
BsuI GTATCC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 233, 316
CaiI CAGNNNCTG 1 cut(s) 164
CciI TCATGA 1 cut(s) 564
CseI GACGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 238
CviAII CATG 1 cut(s) 565
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 297, 452
DpnI GATC 2 cut(s) 63, 531
DpnII GATC 2 cut(s) 61, 529
Eam1104I CTCTTC 3 cut(s) 2, 35, 438
EarI CTCTTC 3 cut(s) 2, 35, 438
EciI GGCGGA 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 294
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 568
FaiI YATR 6 cut(s) 216, 222, 384, 402, 566, 579
FatI CATG 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 162, 165, 460, 492
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 4 cut(s) 162, 165, 460, 492
FspBI CTAG 1 cut(s) 474
GluI GCNGC 4 cut(s) 162, 165, 460, 492
GsaI CCCAGC 2 cut(s) 77, 161
GsuI CTGGAG 1 cut(s) 484
HgaI GACGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 568
HindIII AAGCTT 2 cut(s) 143, 483
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 3 cut(s) 182, 196, 511
Hpy188III TCNNGA 3 cut(s) 83, 172, 565
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 19, 516
HpyCH4III ACNGT 2 cut(s) 237, 442
HpyCH4V TGCA 6 cut(s) 128, 269, 309, 330, 353, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 297, 452
Hsp92II CATG 1 cut(s) 568
Kzo9I GATC 2 cut(s) 61, 529
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 7 cut(s) 59, 157, 171, 194, 304, 448, 570
Lsp1109I GCAGC 4 cut(s) 148, 151, 446, 478
LweI GCATC 2 cut(s) 256, 368
MaeI CTAG 1 cut(s) 474
MalI GATC 2 cut(s) 63, 531
MbiI CCGCTC 1 cut(s) 97
MboI GATC 2 cut(s) 61, 529
MboII GAAGA 5 cut(s) 19, 52, 151, 416, 425
MluCI AATT 2 cut(s) 339, 410
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 122, 202, 236, 278, 316, 382
MspA1I CMGCKG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 491
NdeII GATC 2 cut(s) 61, 529
NlaIII CATG 1 cut(s) 568
PagI TCATGA 1 cut(s) 564
PkrI GCNGC 4 cut(s) 163, 166, 461, 493
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspFI CCCAGC 2 cut(s) 73, 157
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 4 cut(s) 162, 165, 460, 492
Sau3AI GATC 2 cut(s) 61, 529
SchI GAGTC 1 cut(s) 80
SfaNI GCATC 2 cut(s) 256, 368
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 339, 410
SsiI CCGC 2 cut(s) 95, 416
SspMI CTAG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 237, 442
TaqI TCGA 1 cut(s) 82
TasI AATT 2 cut(s) 339, 410
TatI WGTACW 1 cut(s) 237
TscAI CASTG 3 cut(s) 135, 240, 323
TseI GCWGC 4 cut(s) 161, 164, 459, 491
TspDTI ATGAA 3 cut(s) 417, 423, 581
TspRI CASTG 3 cut(s) 135, 240, 323
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.