Rh6DG073100

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002979
Physical Location & Seq
Reverse (-)
8020491 .. 8031567
11077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG073100.1

Sequence Viewer

Length: 597 bp
ATGTCTAATGACATTGCTGAGTCAAACTCGCAACCGCTCCATTCTCAACTCCTCCACCCACGAACTCTAGTGTGGGAGAAGAAGCTTGAGACTTGTCCCATGCCGGAGATGATATTTGGGGACAGTTGTCTGGTTCTGAAGCATGTGAAAAAGTGGTTGCCACCGGTTGAAGTCCCAGCTGCTGCTCTCTGGAAGTTCAGATGTAAACCCTCCGAGCAAGTAATACTGGACTATGACTATACATTCACAACACCGTACAGAGGAAGTGAAACTATTACCTTGGATGCAGACAAGCACAAAGGAGGTGAGATATCTAAGGAGAACTGCAATCTCCACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTAGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCTCTTCTAACTGTAAAAGTGCTTAGAGTTGATGGAAGAGCTGCTGGAGAGAAGCTAGGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGATGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

198

Amino Acids

22.53

Weight (kDa)

5.42

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 46 - 157 8.5e-25 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 2 cut(s) 35, 434
AclWI GGATC 1 cut(s) 553
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 260, 340
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 170, 511
AluBI AGCT 5 cut(s) 85, 179, 488, 502, 514
AluI AGCT 5 cut(s) 85, 179, 488, 502, 514
Alw26I GTCTC 2 cut(s) 83, 453
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 1 cut(s) 182
ApeKI GCWGC 6 cut(s) 179, 182, 488, 520, 544, 547
AsiGI ACCGGT 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 317
BbvI GCAGC 6 cut(s) 166, 169, 475, 507, 531, 534
BccI CCATC 1 cut(s) 473
BciVI GTATCC 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 83, 453
BfaI CTAG 2 cut(s) 68, 503
BfuI GTATCC 1 cut(s) 523
BisI GCNGC 6 cut(s) 180, 183, 489, 521, 545, 548
BlsI GCNGC 6 cut(s) 181, 184, 490, 522, 546, 549
BmrI ACTGGG 1 cut(s) 346
BmsI GCATC 3 cut(s) 274, 386, 531
BmuI ACTGGG 1 cut(s) 346
BoxI GACNNNNGTC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 340
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 231, 341
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 260, 340
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 231, 341
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 6 cut(s) 166, 169, 475, 507, 531, 534
BseYI CCCAGC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 163
BsiSI CCGG 2 cut(s) 104, 164
BslFI GGGAC 3 cut(s) 81, 134, 158
BslI CCNNNNNNNGG 2 cut(s) 260, 340
BsmAI GTCTC 2 cut(s) 83, 453
BsmFI GGGAC 3 cut(s) 81, 134, 158
Bsp143I GATC 1 cut(s) 558
BspACI CCGC 2 cut(s) 35, 434
BspCNI CTCAG 1 cut(s) 10
BspHI TCATGA 1 cut(s) 593
BspPI GGATC 1 cut(s) 553
BspQI GCTCTTC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 231, 341
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 3 cut(s) 125, 255, 460
Bst6I CTCTTC 2 cut(s) 456, 478
BstDEI CTNAG 3 cut(s) 18, 315, 470
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 2 cut(s) 83, 453
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 146
BstPAI GACNNNNGTC 1 cut(s) 126
BstV1I GCAGC 6 cut(s) 166, 169, 475, 507, 531, 534
BsuI GTATCC 1 cut(s) 523
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 593
Cfr10I RCCGGY 1 cut(s) 163
Csp6I GTAC 1 cut(s) 256
CspAI ACCGGT 1 cut(s) 163
CviAII CATG 3 cut(s) 100, 143, 594
CviJI RGCY 9 cut(s) 85, 179, 388, 488, 502, 514, 520, 575, 582
CviKI_1 RGCY 9 cut(s) 85, 179, 388, 488, 502, 514, 520, 575, 582
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 3 cut(s) 18, 315, 470
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 456, 478
EarI CTCTTC 2 cut(s) 456, 478
EciI GGCGGA 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 279
Eco32I GATATC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 158
EcoRV GATATC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 103, 146, 597
FaiI YATR 7 cut(s) 101, 144, 234, 240, 402, 420, 595
FaqI GGGAC 3 cut(s) 81, 134, 158
FatI CATG 3 cut(s) 99, 142, 593
Fnu4HI GCNGC 6 cut(s) 180, 183, 489, 521, 545, 548
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 6 cut(s) 180, 183, 489, 521, 545, 548
FspBI CTAG 2 cut(s) 68, 503
GluI GCNGC 6 cut(s) 180, 183, 489, 521, 545, 548
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 513
HapII CCGG 2 cut(s) 104, 164
Hin1II CATG 3 cut(s) 103, 146, 597
HindIII AAGCTT 2 cut(s) 83, 512
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 104, 164
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 138, 200, 214, 540
Hpy188III TCNNGA 2 cut(s) 190, 594
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 3 cut(s) 125, 255, 460
HpyCH4V TGCA 5 cut(s) 287, 327, 348, 371, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 3 cut(s) 18, 315, 470
Hsp92II CATG 3 cut(s) 103, 146, 597
Kzo9I GATC 1 cut(s) 558
LguI GCTCTTC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 8 cut(s) 116, 117, 175, 177, 189, 212, 322, 477
Lsp1109I GCAGC 6 cut(s) 166, 169, 475, 507, 531, 534
LweI GCATC 3 cut(s) 274, 386, 531
MaeI CTAG 2 cut(s) 68, 503
MalI GATC 1 cut(s) 560
MbiI CCGCTC 1 cut(s) 37
MboI GATC 1 cut(s) 558
MboII GAAGA 4 cut(s) 91, 434, 443, 495
MluCI AATT 2 cut(s) 357, 428
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 6 cut(s) 62, 220, 254, 296, 334, 400
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 104, 164
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 1 cut(s) 558
NlaIII CATG 3 cut(s) 103, 146, 597
NspI RCATGY 1 cut(s) 146
PagI TCATGA 1 cut(s) 593
PciSI GCTCTTC 1 cut(s) 478
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 6 cut(s) 181, 184, 490, 522, 546, 549
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 478
SatI GCNGC 6 cut(s) 180, 183, 489, 521, 545, 548
Sau3AI GATC 1 cut(s) 558
SchI GAGTC 1 cut(s) 29
SetI ASST 9 cut(s) 87, 181, 281, 307, 411, 490, 504, 508, 516
SfaNI GCATC 3 cut(s) 274, 386, 531
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 357, 428
SsiI CCGC 2 cut(s) 35, 434
SspMI CTAG 2 cut(s) 68, 503
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 125, 255, 460
TasI AATT 2 cut(s) 357, 428
TscAI CASTG 1 cut(s) 341
TseI GCWGC 6 cut(s) 179, 182, 488, 520, 544, 547
TspDTI ATGAA 2 cut(s) 435, 441
TspRI CASTG 1 cut(s) 341
XceI RCATGY 1 cut(s) 146
XspI CTAG 2 cut(s) 68, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.