Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

11337537 .. 11341297

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAGTGGAGGTCGACGAGAAGGAGCTGAAAGCCGCCGGAGCCGAGCCGTTGACCGACGGGCGACACGGCCTCCGCATCCATGGCTGGGAAATCGAGTCCCGCAAGCGCTCCATCCTCAGCTCCTCCAATACCGAACTGTGGGAGCAAAAGCTTCAAACTTGTCACATGCCGGAGATGGTGTTTGGGGACAGTGGATTGTTCCTGAACCATGTGAAGAGCGGCGCCACGATTCACTTCAATGCATTTGATGCTCTGGTGGGGTGGAAGAAGGAAGCTCTGCCGCCGGTTGAAGTTCCTGCTGCGGCTCAATGGAAATTCCGAACTAAACCTTCCCAGCAAGTTATACTGGACTATGATTATACATTCACAACGCCGTACTCTGGAAGTGAAACCGTTAAGTTTGATGCGAACAAGCTTGAAAGAGGAGAGATCTCTAAGGAGACTGGAAATCTTCATTGGGAGGACTGCAAAGAAAAAATTGATGTAGTTGCATTGGCTTCGAAAGAGCCTATTCTCTTTTATGACGAGGTGGTTTTGTATGAAGATGAATTGGCTGATAGTGGAGTGTCTCTTTTAACTGTAAAAGTGAGAGTCATGCCGAGTTCTTGGTTTCTCCTCTTGCGATTTTGGCTTAGAGTTGATGGGGCACTAATGAGGCTAAGAGACACTCGAATGCATTGTTCTTTTGGCGATGATGCAAATCCCATTATTCTTCGAGAAAGCTGCTGGAGAGAAGCCACATTTCAGGCTTTAGCTGCAAAAGGATACCCTTCTGAAGATTCTGCCTACAATGATCCAAGCATCATCAGCCAAAGGCTTCCTGCGATCATGCATAAGACCCAAAAGCTAAAGGTACCTGGTAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

291

Amino Acids

32.92

Weight (kDa)

5.57

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	856
AccB1I	GGYRCC	2 cut(s)	224, 856
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	6 cut(s)	36, 76, 103, 222, 284, 305
AclWI	GGATC	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	798
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	380, 858
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	88, 141, 383
AgsI	TTSAA	4 cut(s)	158, 241, 293, 422
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AluBI	AGCT	8 cut(s)	28, 123, 154, 278, 418, 726, 758, 850
AluI	AGCT	8 cut(s)	28, 123, 154, 278, 418, 726, 758, 850
Alw26I	GTCTC	3 cut(s)	437, 576, 660
AlwI	GGATC	1 cut(s)	791
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	302, 726, 758
ApoI	RAATTY	1 cut(s)	317
Asp718I	GGTACC	1 cut(s)	856
AspLEI	GCGC	2 cut(s)	111, 227
AsuII	TTCGAA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	652
BanI	GGYRCC	2 cut(s)	224, 856
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	289, 713, 745
BccI	CCATC	3 cut(s)	122, 172, 638
BceAI	ACGGC	3 cut(s)	34, 85, 361
BcgI	CGANNNNNNTGC	4 cut(s)	483, 517, 708, 742
BciT130I	CCWGG	1 cut(s)	861
BciVI	GTATCC	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	437, 576, 660
BfoI	RGCGCY	2 cut(s)	112, 228
BfuI	GTATCC	1 cut(s)	761
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	7 cut(s)	36, 223, 284, 303, 306, 727, 759
BlsI	GCNGC	7 cut(s)	37, 224, 285, 304, 307, 728, 760
Bme1390I	CCNGG	1 cut(s)	861
BmiI	GGNNCC	3 cut(s)	43, 226, 858
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	5 cut(s)	87, 241, 397, 688, 813
BpmI	CTGGAG	1 cut(s)	751
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 141, 383
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	354, 451
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	2 cut(s)	78, 114
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	3 cut(s)	88, 141, 383
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	2 cut(s)	354, 451
BseRI	GAGGAG	3 cut(s)	115, 441, 608
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	3 cut(s)	289, 713, 745
BseYI	CCCAGC	2 cut(s)	87, 336
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	224, 856
BsiSI	CCGG	3 cut(s)	39, 173, 287
BslFI	GGGAC	2 cut(s)	85, 203
BslI	CCNNNNNNNGG	3 cut(s)	88, 141, 383
BsmAI	GTCTC	3 cut(s)	437, 576, 660
BsmFI	GGGAC	2 cut(s)	85, 203
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	432, 796, 828
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	6 cut(s)	36, 76, 103, 222, 284, 305
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	43, 226, 858
BspPI	GGATC	1 cut(s)	791
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	224, 856
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	354, 451
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	3 cut(s)	432, 796, 828
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	4 cut(s)	141, 194, 397, 583
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	119, 438, 635, 662
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	78, 114
BstH2I	RGCGCY	2 cut(s)	112, 228
BstHHI	GCGC	2 cut(s)	111, 227
BstKTI	GATC	3 cut(s)	435, 799, 831
BstMAI	GTCTC	3 cut(s)	437, 576, 660
BstMBI	GATC	3 cut(s)	432, 796, 828
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 84, 251, 631, 758, 810
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	652
BstV1I	GCAGC	3 cut(s)	289, 713, 745
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	78, 114
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	2 cut(s)	111, 227
Cfr10I	RCCGGY	1 cut(s)	286
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	379, 857
CviAII	CATG	5 cut(s)	83, 169, 212, 598, 832
CviQI	GTAC	2 cut(s)	379, 857
DdeI	CTNAG	4 cut(s)	119, 438, 635, 662
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	3 cut(s)	434, 798, 830
DpnII	GATC	3 cut(s)	432, 796, 828
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	82
Eco47III	AGCGCT	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	798
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	3 cut(s)	247, 681, 837
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	86, 172, 215, 601, 835
FaqI	GGGAC	2 cut(s)	85, 203
FatI	CATG	5 cut(s)	82, 168, 211, 597, 831
FauI	CCCGC	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	7 cut(s)	36, 223, 284, 303, 306, 727, 759
FokI	GGATG	2 cut(s)	65, 101
Fsp4HI	GCNGC	7 cut(s)	36, 223, 284, 303, 306, 727, 759
GlaI	GCGC	2 cut(s)	110, 226
GluI	GCNGC	7 cut(s)	36, 223, 284, 303, 306, 727, 759
GsaI	CCCAGC	2 cut(s)	91, 340
GsuI	CTGGAG	1 cut(s)	751
HaeII	RGCGCY	2 cut(s)	112, 228
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	3 cut(s)	39, 173, 287
HhaI	GCGC	2 cut(s)	111, 227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	86, 172, 215, 601, 835
Hin6I	GCGC	2 cut(s)	109, 225
HinP1I	GCGC	2 cut(s)	109, 225
HincII	GTYRAC	2 cut(s)	16, 54
HindII	GTYRAC	2 cut(s)	16, 54
HindIII	AAGCTT	2 cut(s)	152, 416
HinfI	GANTC	4 cut(s)	98, 232, 594, 782
HpaII	CCGG	3 cut(s)	39, 173, 287
Hpy166II	GTNNAC	2 cut(s)	16, 54
Hpy188I	TCNGA	2 cut(s)	323, 778
Hpy188III	TCNNGA	3 cut(s)	205, 384, 719
Hpy8I	GTNNAC	2 cut(s)	16, 54
Hpy99I	CGWCG	2 cut(s)	20, 62
HpyAV	CCTTC	4 cut(s)	16, 265, 342, 783
HpyCH4III	ACNGT	4 cut(s)	141, 194, 397, 583
HpyCH4V	TGCA	7 cut(s)	245, 471, 494, 679, 701, 761, 835
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 84, 251, 631, 758, 810
HpyF3I	CTNAG	4 cut(s)	119, 438, 635, 662
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	86, 172, 215, 601, 835
HspAI	GCGC	2 cut(s)	109, 225
KasI	GGCGCC	1 cut(s)	224
KpnI	GGTACC	1 cut(s)	860
Kzo9I	GATC	3 cut(s)	432, 796, 828
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	5 cut(s)	25, 41, 116, 128, 145
Lsp1109I	GCAGC	3 cut(s)	289, 713, 745
LweI	GCATC	5 cut(s)	87, 241, 397, 688, 813
MabI	ACCWGGT	1 cut(s)	859
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	434, 798, 830
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	3 cut(s)	432, 796, 828
MboII	GAAGA	6 cut(s)	229, 280, 446, 557, 707, 791
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	3 cut(s)	317, 480, 551
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	107, 603
MnlI	CCTC	9 cut(s)	4, 83, 128, 136, 419, 457, 523, 629, 651
Mph1103I	ATGCAT	3 cut(s)	247, 681, 837
MseI	TTAA	2 cut(s)	399, 578
MslI	CAYNNNNRTG	2 cut(s)	240, 674
MspI	CCGG	3 cut(s)	39, 173, 287
MspR9I	CCNGG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	6 cut(s)	41, 84, 251, 631, 758, 810
NarI	GGCGCC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	3 cut(s)	432, 796, 828
NlaIII	CATG	5 cut(s)	86, 172, 215, 601, 835
NlaIV	GGNNCC	3 cut(s)	43, 226, 858
NmeAIII	GCCGAG	2 cut(s)	70, 627
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	3 cut(s)	247, 681, 837
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	232, 782
PkrI	GCNGC	7 cut(s)	37, 224, 285, 304, 307, 728, 760
PleI	GAGTC	2 cut(s)	106, 602
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	106, 602
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	2 cut(s)	87, 336
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	3 cut(s)	43, 226, 858
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	2 cut(s)	380, 858
RsaNI	GTAC	2 cut(s)	379, 857
RseI	CAYNNNNRTG	2 cut(s)	240, 674
SalI	GTCGAC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	399, 578
SatI	GCNGC	7 cut(s)	36, 223, 284, 303, 306, 727, 759
Sau3AI	GATC	3 cut(s)	432, 796, 828
SchI	GAGTC	2 cut(s)	107, 603
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	1 cut(s)	652
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	5 cut(s)	87, 241, 397, 688, 813
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	240, 674
Sse9I	AATT	3 cut(s)	317, 480, 551
SsiI	CCGC	6 cut(s)	36, 76, 103, 222, 284, 305
SspDI	GGCGCC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	859
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	4 cut(s)	141, 194, 397, 583
TaqI	TCGA	5 cut(s)	15, 96, 503, 673, 718
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	317, 480, 551
TauI	GCSGC	4 cut(s)	38, 225, 286, 308
TfiI	GAWTC	2 cut(s)	232, 782
Tru1I	TTAA	2 cut(s)	399, 578
Tru9I	TTAA	2 cut(s)	399, 578
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	3 cut(s)	302, 726, 758
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	446, 558, 564
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	15
Zsp2I	ATGCAT	3 cut(s)	247, 681, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.