Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

74085994 .. 74086449

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0552800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTGCTTTTGATTTAGCAGAGGAGAAGTTCCGGCAAGTGTCATTTCCAGTTTTCGACCAAAGTGAAGATGGCATGGATGTGAGATTTCTAAAAAGTCAGGCTCTTTTAGGAGGATGCCTTGGTGTATGGTCTCGGGATATTTTAGACCGTAGTGAAATTTGGGTGATGAGAGAGTATGGTGTGCCTGAATCTTGGGTTAAACTCAGTCAATTTAGTCGAGATGATTTACCAGATGGTTTCACTTCATGCAGGTGGGAACCTAGTTTCGTTACAGAAGGTGGTACAGTTATGATCAAACGGCTTGACAAGAAGGAGTTGGTCTGGATTGAATGCCGTCAAGAAGAGAATCCTGTCTGCAGTGCCCAATATAGAATTGAGGAGTTTCGGGAGTTTCCTGGGGTGATATTTGACGCGACTGTATATGATGAAACTTTAGTTTCACTACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

151

Amino Acids

17.56

Weight (kDa)

4.49

Isoelectric Point (pI)

67.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	243
AccII	CGCG	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	178, 415
AvaI	CYCGRG	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	367
BccI	CCATC	2 cut(s)	65, 230
BceAI	ACGGC	2 cut(s)	317, 321
BciT130I	CCWGG	1 cut(s)	399
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	121, 398
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	121, 398
BseGI	GGATG	2 cut(s)	85, 122
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	38, 395
BseSI	GKGCMC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	121, 398
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	152, 289, 421
Bst6I	CTCTTC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	85, 122
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	85, 122
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	243
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	2 cut(s)	76, 249
CviJI	RGCY	2 cut(s)	104, 304
CviKI_1	RGCY	2 cut(s)	104, 304
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	79, 252
FaiI	YATR	8 cut(s)	77, 130, 180, 250, 293, 372, 424, 426
FatI	CATG	2 cut(s)	75, 248
FbaI	TGATCA	1 cut(s)	294
FokI	GGATG	2 cut(s)	92, 129
FspBI	CTAG	1 cut(s)	264
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	79, 252
HinfI	GANTC	2 cut(s)	191, 349
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	178, 415
Hpy188III	TCNNGA	5 cut(s)	137, 221, 325, 341, 389
HpyAV	CCTTC	2 cut(s)	272, 307
HpyCH4III	ACNGT	3 cut(s)	152, 289, 421
HpyCH4V	TGCA	2 cut(s)	252, 360
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	79, 252
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	294
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	2 cut(s)	80, 356
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	159, 212, 375
MnlI	CCTC	3 cut(s)	16, 107, 373
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	80, 253
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	416
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	2 cut(s)	79, 252
NlaIV	GGNNCC	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	243
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	2 cut(s)	191, 349
Psp6I	CCWGG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	80, 253
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	4 cut(s)	257, 265, 283, 451
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	80, 253
Sse9I	AATT	3 cut(s)	159, 212, 375
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	152, 289, 421
TaqI	TCGA	2 cut(s)	57, 220
TasI	AATT	3 cut(s)	159, 212, 375
TfiI	GAWTC	2 cut(s)	191, 349
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	237, 444
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.