Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

15712940 .. 15715968

Gene Structure 3029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G137600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGTGGAGGTTGACGAGAAGGAGCTGAAAGCCGCCGGAGCTGAGCCGTTGACCGACGGACGCCATGGCCTCCGTATCCATGGTTGGGAAATCGAGTCCCGCAAGCGCTCCATTCTCAAGTCCTCCACCCTCGAACTGTGGGAGAAAAAGCTTGAGACATATCACATGCCAGAAATGGTGTTTGGGGACAGTTGTTTGGCTCTGAAACACGTTAAGAGTGGCTTTACAATTCATTTCAATGCATTTGATGCTCTAGTTGGGTGGAAGAAGGAAGCTTTGCCACCAGTTGAAGTCCCAGCTGCTGCTCAATGGAAATTCCGAAGTAAACCCTCCCAGCAAATAATACTGGATTATGATTATACATTCACAACGCCATACTGCGGAAGTGAAACTGTTAAGTTTGATGCAGACAAGCTTGAAGGAGGAGAGATCTCTAAGGATACCTGCAATCTCCATTGGGAGGACTGCAACGAAAAAATCGATGTAGTTGCTTTGGCTTCGAAAGAGCCTATTCTCTTTTATGATGAGGTGGTCTTGTATGAAGATGAATTGGCTGATAGTGGAGTGTCACTTTTAACTGTAAAAGTGAGAGTCATGCCAAGTTGTTGGTTTCTCCTGTTGCGATTTTGGATCTTCTTACAGCTTAGAGTTGATGGAGCACTAATGAGACTAAGGGACACTCGAATGCATTGTGCTTTTAATGACAATGCAAGTCCCACTATTCTTCGAGAAATCTGCTGGAGAGAAGCCACATTTCAGGCTTTATCTGCAAAGGGATACCCTTCTGAAGATGCTGCCTATAATGATCCAAGCATCATCAGCCAAAGGCTTCCTGTGATCATGCATAAGACCCAAAAGCTAAAGGTACCTGATAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

295

Amino Acids

33.62

Weight (kDa)

5.47

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	868
AccB1I	GGYRCC	1 cut(s)	868
AciI	CCGC	3 cut(s)	36, 103, 384
AclWI	GGATC	2 cut(s)	641, 803
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	810
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	870
AfeI	AGCGCT	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	88, 383, 463
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	241, 293, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	8 cut(s)	28, 44, 154, 278, 302, 418, 646, 862
AluI	AGCT	8 cut(s)	28, 44, 154, 278, 302, 418, 646, 862
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	152, 664
AlwI	GGATC	2 cut(s)	641, 803
AlwNI	CAGNNNCTG	1 cut(s)	305
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	3 cut(s)	302, 305, 797
ApoI	RAATTY	1 cut(s)	317
Asp718I	GGTACC	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	111
AsuII	TTCGAA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	868
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	3 cut(s)	289, 292, 784
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	34
BcgI	CGANNNNNNTGC	4 cut(s)	473, 507, 720, 754
BciVI	GTATCC	3 cut(s)	89, 436, 773
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	152, 664
BfaI	CTAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	3 cut(s)	89, 436, 773
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	4 cut(s)	36, 303, 306, 798
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	4 cut(s)	37, 304, 307, 799
BmiI	GGNNCC	1 cut(s)	870
BmsI	GCATC	4 cut(s)	241, 397, 784, 825
BpmI	CTGGAG	1 cut(s)	763
Bpu1102I	GCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	2 cut(s)	104, 176
Bsa29I	ATCGAT	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	67, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 383, 463
Bse1I	ACTGG	2 cut(s)	287, 354
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	67, 82
BseLI	CCNNNNNNNGG	3 cut(s)	88, 383, 463
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	287, 354
BseRI	GAGGAG	1 cut(s)	441
BseXI	GCAGC	3 cut(s)	289, 292, 784
BseYI	CCCAGC	2 cut(s)	298, 336
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	868
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	5 cut(s)	85, 203, 281, 692, 702
BslI	CCNNNNNNNGG	3 cut(s)	88, 383, 463
BsmAI	GTCTC	2 cut(s)	152, 664
BsmFI	GGGAC	5 cut(s)	85, 203, 281, 692, 702
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	4 cut(s)	432, 633, 808, 840
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	2 cut(s)	67, 82
BspACI	CCGC	3 cut(s)	36, 103, 384
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	870
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	641, 803
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	287, 354
BssECI	CCNNGG	2 cut(s)	67, 82
BssMI	GATC	4 cut(s)	432, 633, 808, 840
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	67, 82
Bst4CI	ACNGT	4 cut(s)	141, 194, 397, 583
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	45, 438, 647, 674
BstDSI	CCRYGG	2 cut(s)	67, 82
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	4 cut(s)	435, 636, 811, 843
BstMAI	GTCTC	2 cut(s)	152, 664
BstMBI	GATC	4 cut(s)	432, 633, 808, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 251, 770, 822
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	289, 292, 784
BstX2I	RGATCY	2 cut(s)	432, 633
BstXI	CCANNNNNNTGG	1 cut(s)	609
BstYI	RGATCY	2 cut(s)	432, 633
Bsu15I	ATCGAT	1 cut(s)	483
BsuI	GTATCC	3 cut(s)	89, 436, 773
BsuRI	GGCC	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	67, 82
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	869
CviAII	CATG	5 cut(s)	68, 83, 169, 598, 844
CviQI	GTAC	1 cut(s)	869
DdeI	CTNAG	4 cut(s)	45, 438, 647, 674
DpnI	GATC	4 cut(s)	434, 635, 810, 842
DpnII	GATC	4 cut(s)	432, 633, 808, 840
Eco130I	CCWWGG	2 cut(s)	67, 82
Eco47III	AGCGCT	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	67, 82
EcoT22I	ATGCAT	3 cut(s)	247, 693, 849
ErhI	CCWWGG	2 cut(s)	67, 82
FaeI	CATG	5 cut(s)	71, 86, 172, 601, 847
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	5 cut(s)	85, 203, 281, 692, 702
FatI	CATG	5 cut(s)	67, 82, 168, 597, 843
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	4 cut(s)	36, 303, 306, 798
Fsp4HI	GCNGC	4 cut(s)	36, 303, 306, 798
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	36, 303, 306, 798
GsaI	CCCAGC	2 cut(s)	302, 340
GsuI	CTGGAG	1 cut(s)	763
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	71, 86, 172, 601, 847
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	2 cut(s)	16, 54
HindII	GTYRAC	2 cut(s)	16, 54
HindIII	AAGCTT	3 cut(s)	152, 276, 416
HinfI	GANTC	2 cut(s)	98, 594
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	3 cut(s)	16, 54, 329
Hpy188I	TCNGA	3 cut(s)	207, 323, 790
Hpy188III	TCNNGA	1 cut(s)	731
Hpy8I	GTNNAC	3 cut(s)	16, 54, 329
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	4 cut(s)	16, 265, 416, 795
HpyCH4III	ACNGT	4 cut(s)	141, 194, 397, 583
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	8 cut(s)	245, 410, 450, 471, 691, 713, 773, 847
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 251, 770, 822
HpyF3I	CTNAG	4 cut(s)	45, 438, 647, 674
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	71, 86, 172, 601, 847
HspAI	GCGC	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	872
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	432, 633, 808, 840
LmnI	GCTCC	4 cut(s)	25, 41, 116, 659
Lsp1109I	GCAGC	3 cut(s)	289, 292, 784
LweI	GCATC	4 cut(s)	241, 397, 784, 825
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	570
MalI	GATC	4 cut(s)	434, 635, 810, 842
MboI	GATC	4 cut(s)	432, 633, 808, 840
MboII	GAAGA	5 cut(s)	280, 557, 628, 719, 803
MflI	RGATCY	2 cut(s)	432, 633
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	3 cut(s)	231, 317, 551
MlyI	GAGTC	2 cut(s)	107, 603
MnlI	CCTC	8 cut(s)	4, 83, 136, 143, 343, 419, 457, 523
Mph1103I	ATGCAT	3 cut(s)	247, 693, 849
MseI	TTAA	4 cut(s)	216, 399, 578, 702
MslI	CAYNNNNRTG	2 cut(s)	240, 686
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	693
MwoI	GCNNNNNNNGC	4 cut(s)	41, 251, 770, 822
NcoI	CCATGG	2 cut(s)	67, 82
NdeII	GATC	4 cut(s)	432, 633, 808, 840
NlaIII	CATG	5 cut(s)	71, 86, 172, 601, 847
NlaIV	GGNNCC	1 cut(s)	870
NmuCI	GTSAC	1 cut(s)	570
NsiI	ATGCAT	3 cut(s)	247, 693, 849
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PctI	GAATGC	1 cut(s)	693
PkrI	GCNGC	4 cut(s)	37, 304, 307, 799
PleI	GAGTC	2 cut(s)	106, 602
PpsI	GAGTC	2 cut(s)	106, 602
PspFI	CCCAGC	2 cut(s)	298, 336
PspN4I	GGNNCC	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	432, 633
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
RseI	CAYNNNNRTG	2 cut(s)	240, 686
SaqAI	TTAA	4 cut(s)	216, 399, 578, 702
SatI	GCNGC	4 cut(s)	36, 303, 306, 798
Sau3AI	GATC	4 cut(s)	432, 633, 808, 840
SchI	GAGTC	2 cut(s)	107, 603
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	4 cut(s)	241, 397, 784, 825
SfuI	TTCGAA	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	240, 686
SmlI	CTYRAG	2 cut(s)	119, 155
SmoI	CTYRAG	2 cut(s)	119, 155
Sse9I	AATT	3 cut(s)	231, 317, 551
SsiI	CCGC	3 cut(s)	36, 103, 384
SspMI	CTAG	1 cut(s)	257
StyI	CCWWGG	2 cut(s)	67, 82
TaaI	ACNGT	4 cut(s)	141, 194, 397, 583
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	6 cut(s)	96, 135, 483, 503, 685, 730
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	231, 317, 551
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	4 cut(s)	216, 399, 578, 702
Tru9I	TTAA	4 cut(s)	216, 399, 578, 702
TseFI	GTSAC	1 cut(s)	570
TseI	GCWGC	3 cut(s)	302, 305, 797
Tsp45I	GTSAC	1 cut(s)	570
TspDTI	ATGAA	3 cut(s)	224, 558, 564
TspGWI	ACGGA	2 cut(s)	65, 75
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	257
Zsp2I	ATGCAT	3 cut(s)	247, 693, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.