Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004702.1

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

34325 .. 34663

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004702.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

atggaaatagaggtggacgagaaagccgctggacctgagttgttctccgacggacgccacggctgggaaatcgagactcgcaaccgctccattctcaactcctccacccacgaactgtgggagaagaagcttgagactcgtcccatgccggagatgatatttggggacagttgtctggttctgaagcatgtgaaaaagtggttgccaccggttgaagtcccagctgctgctctctggaagttcagatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

83

Amino Acids

9.73

Weight (kDa)

5.9

Isoelectric Point (pI)

80.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AciI	CCGC	2 cut(s)	27, 85
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	215
AluBI	AGCT	2 cut(s)	130, 224
AluI	AGCT	2 cut(s)	130, 224
Alw26I	GTCTC	2 cut(s)	68, 128
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	224, 227
AsiGI	ACCGGT	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	211, 214
BccI	CCATC	1 cut(s)	240
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	68, 128
BisI	GCNGC	3 cut(s)	27, 225, 228
BlsI	GCNGC	3 cut(s)	28, 226, 229
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	211, 214
BseYI	CCCAGC	2 cut(s)	63, 220
BshTI	ACCGGT	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	149, 209
BslFI	GGGAC	3 cut(s)	126, 179, 203
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	68, 128
BsmFI	GGGAC	3 cut(s)	126, 179, 203
BspACI	CCGC	2 cut(s)	27, 85
BspCNI	CTCAG	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	58
BssNI	GRCGYC	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	117, 170
BstACI	GRCGYC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	68, 128
BstNSI	RCATGY	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	211, 214
BtgI	CCRYGG	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	63
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	145, 188
CviJI	RGCY	4 cut(s)	26, 63, 130, 224
CviKI_1	RGCY	4 cut(s)	26, 63, 130, 224
DdeI	CTNAG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	203
FaeI	CATG	2 cut(s)	148, 191
FaiI	YATR	2 cut(s)	146, 189
FaqI	GGGAC	3 cut(s)	126, 179, 203
FatI	CATG	2 cut(s)	144, 187
Fnu4HI	GCNGC	3 cut(s)	27, 225, 228
Fsp4HI	GCNGC	3 cut(s)	27, 225, 228
GluI	GCNGC	3 cut(s)	27, 225, 228
GsaI	CCCAGC	2 cut(s)	67, 224
HapII	CCGG	2 cut(s)	149, 209
HgaI	GACGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	148, 191
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	76, 136
HpaII	CCGG	2 cut(s)	149, 209
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	49, 183, 245
Hpy188III	TCNNGA	2 cut(s)	73, 235
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	117, 170
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	148, 191
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	8 cut(s)	15, 48, 49, 161, 162, 220, 222, 234
Lsp1109I	GCAGC	2 cut(s)	211, 214
MbiI	CCGCTC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	70, 130
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	2 cut(s)	4, 112
MspA1I	CMGCKG	2 cut(s)	29, 224
MspI	CCGG	2 cut(s)	149, 209
NlaIII	CATG	2 cut(s)	148, 191
NspI	RCATGY	1 cut(s)	191
PinAI	ACCGGT	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	28, 226, 229
PleI	GAGTC	2 cut(s)	70, 130
PpsI	GAGTC	2 cut(s)	70, 130
PshAI	GACNNNNGTC	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	63, 220
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	224
SatI	GCNGC	3 cut(s)	27, 225, 228
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	70, 130
SetI	ASST	4 cut(s)	15, 37, 132, 226
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	2 cut(s)	27, 85
TaaI	ACNGT	2 cut(s)	117, 170
TaqI	TCGA	1 cut(s)	72
TauI	GCSGC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	224, 227
TspGWI	ACGGA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	32
XceI	RCATGY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.