AT4G34270

TIP41-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002979
Physical Location & Seq
Reverse (-)
16403844 .. 16406303
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34270.1

Sequence Viewer

Length: 873 bp
ATGGAGACGGTGGTCGATAAAGATGTTCTGAAGTCTTCCGGGGCTGAGCTTCTTCCCGACGGACGTCGAGGTTTACGCATCCATGACTGGGAGATCGAAACCCTCCGCGGCACGATTCTCACTTCTCTCGCTGTCGAAGAGTGGGAAAAAAAGCTTAAGACATCTCACTTACCTGAAATGGTTTTTGGCGAGAATGCATTAGTCCTTAAACACTTAGGTAGCAACACTAAGATTCATTTTAATGCGTTTGACGCACTAGCTGGTTGGAAGCAGGAAGGGCTTCCACCTGTTGAAGTTCCTGCTGCAGCACAATGGAAATTCAGGAGCAAGCCGTCTCAGCAGGTGATACTAGATTATGATTACACGTTTACAACGCCATACTGTGGAAGTGAAGTAGTTGAGAAAGACAAAGAAACGGTTGAGGCAAAAGCTAATCCAAAGGGGGAAGCTACTCTTCAGTGGGAGAACTGTGAAGATCAGATTGATTTGGCTGCTCTCTCACTTAAAGAACCTATTCTCTTCTATGATGAGGTAGTTTTGTATGAAGATGAACTGGCTGACAATGGAGTGTCACTTCTGACTGTGAAAGTGAGAGTCATGCCAAGCTCATGGTTCCTCCTCTTGCGATTTTGGCTGAGAGTTGATGGTGTGCTTATGAGATTGAGAGAGACGAGAATGCATTATAGGTTTGGCGAAGATGAGGCACCAACTGTTCTTCGTGAAAACTGTTGGAGAGAAGCAACATTTCAGTCTCTATCTGCGAAAGGGTATCCAGTTGACTTAGCAGTCTGGAGCGACCCGAGCTCCATCAGTCAGAGGCTTCCAGTGATTAAGCATACGACACAGAAACTGAAGATCCCTAGTAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

290

Amino Acids

33.07

Weight (kDa)

5.42

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 252 5.3e-58 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AasI GACNNNNNNGTC 1 cut(s) 785
AatII GACGTC 1 cut(s) 67
Acc36I ACCTGC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 703
AccB7I CCANNNNNTGG 1 cut(s) 383
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 106, 108
AclWI GGATC 1 cut(s) 850
AcsI RAATTY 1 cut(s) 317
AcuI CTGAAG 3 cut(s) 50, 440, 872
AcyI GRCGYC 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 88, 383
AflII CTTAAG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 1 cut(s) 293
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 7 cut(s) 49, 154, 260, 431, 449, 606, 804
AluI AGCT 7 cut(s) 49, 154, 260, 431, 449, 606, 804
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 3 cut(s) 339, 662, 756
AlwI GGATC 1 cut(s) 850
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 799
ApeKI GCWGC 3 cut(s) 302, 305, 491
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 2 cut(s) 279, 513
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 799
BanI GGYRCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 3 cut(s) 289, 317, 478
BccI CCATC 2 cut(s) 638, 815
BceAI ACGGC 1 cut(s) 316
BciVI GTATCC 1 cut(s) 780
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 3 cut(s) 339, 662, 756
BfaI CTAG 3 cut(s) 257, 350, 861
BfmI CTRYAG 1 cut(s) 303
BfrI CTTAAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 4 cut(s) 109, 303, 306, 492
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 4 cut(s) 110, 304, 307, 493
Bme1390I CCNGG 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 799
BmiI GGNNCC 2 cut(s) 614, 705
BmrFI CCNGG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 97
BoxI GACNNNNGTC 2 cut(s) 11, 63
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 811
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 39, 106
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 383
Bse1I ACTGG 4 cut(s) 92, 558, 773, 824
BseDI CCNNGG 2 cut(s) 39, 106
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 88, 383
BseMII CTCAG 3 cut(s) 36, 350, 626
BseNI ACTGG 4 cut(s) 92, 558, 773, 824
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 3 cut(s) 289, 317, 478
Bsh1236I CGCG 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 806
BsiHKCI CYCGRG 1 cut(s) 799
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 88, 383
BsmAI GTCTC 3 cut(s) 339, 662, 756
BsmBI CGTCTC 2 cut(s) 339, 662
BsmI GAATGC 2 cut(s) 199, 681
BsoBI CYCGRG 1 cut(s) 799
Bsp1286I GDGCHC 1 cut(s) 806
Bsp143I GATC 3 cut(s) 93, 475, 855
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 2 cut(s) 106, 108
BspCNI CTCAG 3 cut(s) 37, 349, 627
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 614, 705
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 850
BspT107I GGYRCC 1 cut(s) 703
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 4 cut(s) 92, 558, 773, 824
BssECI CCNNGG 2 cut(s) 39, 106
BssMI GATC 3 cut(s) 93, 475, 855
BssNI GRCGYC 1 cut(s) 64
Bst4CI ACNGT 7 cut(s) 10, 383, 418, 470, 583, 712, 728
Bst6I CTCTTC 3 cut(s) 132, 459, 524
BstACI GRCGYC 1 cut(s) 64
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 6 cut(s) 45, 214, 228, 336, 635, 781
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 108
BstKTI GATC 3 cut(s) 96, 478, 858
BstMAI GTCTC 3 cut(s) 339, 662, 756
BstMBI GATC 3 cut(s) 93, 475, 855
BstMWI GCNNNNNNNGC 5 cut(s) 251, 277, 337, 631, 801
BstPAI GACNNNNGTC 2 cut(s) 11, 63
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 289, 317, 478
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 855
BstXI CCANNNNNNTGG 1 cut(s) 609
BstYI RGATCY 1 cut(s) 855
BsuI GTATCC 1 cut(s) 780
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 464, 831
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 850
Cfr42I CCGCGG 1 cut(s) 109
CseI GACGC 1 cut(s) 260
CviAII CATG 3 cut(s) 83, 598, 609
DdeI CTNAG 6 cut(s) 45, 214, 228, 336, 635, 781
DpnI GATC 3 cut(s) 95, 477, 857
DpnII GATC 3 cut(s) 93, 475, 855
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1104I CTCTTC 3 cut(s) 132, 459, 524
EarI CTCTTC 3 cut(s) 132, 459, 524
Ecl136II GAGCTC 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 806
Eco53kI GAGCTC 1 cut(s) 804
Eco57I CTGAAG 3 cut(s) 50, 440, 872
Eco88I CYCGRG 1 cut(s) 799
EcoICRI GAGCTC 1 cut(s) 804
EcoT22I ATGCAT 2 cut(s) 199, 681
EcoT38I GRGCYC 1 cut(s) 806
Esp3I CGTCTC 2 cut(s) 339, 662
FaeI CATG 3 cut(s) 86, 601, 612
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 3 cut(s) 82, 597, 608
Fnu4HI GCNGC 4 cut(s) 109, 303, 306, 492
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 806
Fsp4HI GCNGC 4 cut(s) 109, 303, 306, 492
FspBI CTAG 3 cut(s) 257, 350, 861
GluI GCNGC 4 cut(s) 109, 303, 306, 492
GsuI CTGGAG 1 cut(s) 811
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 3 cut(s) 86, 601, 612
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 3 cut(s) 115, 232, 594
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 74, 369, 778
Hpy188I TCNGA 4 cut(s) 30, 480, 579, 816
Hpy188III TCNNGA 4 cut(s) 56, 322, 719, 790
Hpy8I GTNNAC 3 cut(s) 74, 369, 778
Hpy99I CGWCG 2 cut(s) 62, 69
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 7 cut(s) 10, 383, 418, 470, 583, 712, 728
HpyCH4IV ACGT 2 cut(s) 64, 365
HpyCH4V TGCA 3 cut(s) 197, 305, 679
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 277, 337, 631, 801
HpyF3I CTNAG 6 cut(s) 45, 214, 228, 336, 635, 781
HpySE526I ACGT 2 cut(s) 64, 365
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 3 cut(s) 86, 601, 612
KspI CCGCGG 1 cut(s) 109
Kzo9I GATC 3 cut(s) 93, 475, 855
LmnI GCTCC 3 cut(s) 324, 792, 809
Lsp1109I GCAGC 3 cut(s) 289, 317, 478
LweI GCATC 1 cut(s) 87
MaeI CTAG 3 cut(s) 257, 350, 861
MaeII ACGT 2 cut(s) 64, 365
MaeIII GTNAC 1 cut(s) 570
MalI GATC 3 cut(s) 95, 477, 857
MboI GATC 3 cut(s) 93, 475, 855
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 1 cut(s) 806
MluCI AATT 1 cut(s) 317
MlyI GAGTC 1 cut(s) 603
MmeI TCCRAC 2 cut(s) 245, 710
MnlI CCTC 8 cut(s) 62, 113, 415, 523, 626, 629, 694, 810
Mph1103I ATGCAT 2 cut(s) 199, 681
MroXI GAANNNNTTC 2 cut(s) 279, 513
MseI TTAA 6 cut(s) 156, 207, 240, 504, 831, 871
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 108
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 2 cut(s) 199, 681
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 5 cut(s) 251, 277, 337, 631, 801
NciI CCSGG 1 cut(s) 40
NdeII GATC 3 cut(s) 93, 475, 855
NlaIII CATG 3 cut(s) 86, 601, 612
NlaIV GGNNCC 2 cut(s) 614, 705
NmuCI GTSAC 1 cut(s) 570
NsiI ATGCAT 2 cut(s) 199, 681
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 2 cut(s) 199, 681
PdmI GAANNNNTTC 2 cut(s) 279, 513
PfeI GAWTC 2 cut(s) 115, 232
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 4 cut(s) 110, 304, 307, 493
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PshAI GACNNNNGTC 2 cut(s) 11, 63
Psp124BI GAGCTC 1 cut(s) 806
PspN4I GGNNCC 2 cut(s) 614, 705
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 855
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 806
SacII CCGCGG 1 cut(s) 109
SaqAI TTAA 6 cut(s) 156, 207, 240, 504, 831, 871
SatI GCNGC 4 cut(s) 109, 303, 306, 492
Sau3AI GATC 3 cut(s) 93, 475, 855
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 806
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 303
Sfr303I CCGCGG 1 cut(s) 109
SgrBI CCGCGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 317
SsiI CCGC 2 cut(s) 106, 108
SspMI CTAG 3 cut(s) 257, 350, 861
SstI GAGCTC 1 cut(s) 806
StyD4I CCNGG 1 cut(s) 38
TaaI ACNGT 7 cut(s) 10, 383, 418, 470, 583, 712, 728
TaiI ACGT 2 cut(s) 67, 368
TaqI TCGA 4 cut(s) 15, 67, 96, 135
TasI AATT 1 cut(s) 317
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 115, 232
Tru1I TTAA 6 cut(s) 156, 207, 240, 504, 831, 871
Tru9I TTAA 6 cut(s) 156, 207, 240, 504, 831, 871
TscAI CASTG 2 cut(s) 464, 831
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 3 cut(s) 302, 305, 491
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 3 cut(s) 224, 558, 564
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 2 cut(s) 464, 831
Van91I CCANNNNNTGG 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 155
XapI RAATTY 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 279, 513
XspI CTAG 3 cut(s) 257, 350, 861
ZraI GACGTC 1 cut(s) 65
Zsp2I ATGCAT 2 cut(s) 199, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.