Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009578.1

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Forward (+)

38516 .. 42652

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009578.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggaagtagaggtcgacgagaaggagctcaaagccgccggagccgagttgttctccgacggacgccgcggccttcgaatccacggctgggaaatcgagactcgcaaccgctccattctcaactcctccacccacgaactgtgggagaaaaagcttgagacttgtcacatgccggagatgatattcggggagagttgtttggttctgaagcatgtgaagagtggcaccactattcacttcaatgcttttgatgctctgattgggtggaagaaggaggctttgcctccagttgaagtcccagctgctgctcagtggaagttcagatgtaaaccctctgagcaagtgatactggattatgactatacattcacaacaccgtatggaggaagtgaaactattaccttggatgcagacaagaagggatacccttctgaagctgctgcctacaatgatccaagtatcatcagccaaaggcttcctgtggtcataagcaagacccaaaagctaaaggtatctagtaacatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

175

Amino Acids

19.72

Weight (kDa)

5.98

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	69
AciI	CCGC	4 cut(s)	36, 67, 69, 109
AclWI	GGATC	1 cut(s)	446
AcuI	CTGAAG	2 cut(s)	227, 453
AcyI	GRCGYC	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	88, 383
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	241, 293
AluBI	AGCT	5 cut(s)	28, 154, 302, 437, 505
AluI	AGCT	5 cut(s)	28, 154, 302, 437, 505
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	2 cut(s)	92, 152
AlwI	GGATC	1 cut(s)	446
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	4 cut(s)	302, 305, 437, 440
AsuII	TTCGAA	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	289, 292, 424, 427
BceAI	ACGGC	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	92, 152
BfaI	CTAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	7 cut(s)	36, 67, 70, 303, 306, 438, 441
BlsI	GCNGC	7 cut(s)	37, 68, 71, 304, 307, 439, 442
BmiI	GGNNCC	2 cut(s)	43, 226
BmsI	GCATC	2 cut(s)	241, 397
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	67, 82, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 383
Bse1I	ACTGG	2 cut(s)	287, 354
BseDI	CCNNGG	3 cut(s)	67, 82, 402
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	88, 383
BseMII	CTCAG	2 cut(s)	323, 327
BseNI	ACTGG	2 cut(s)	287, 354
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	4 cut(s)	289, 292, 424, 427
BseYI	CCCAGC	2 cut(s)	87, 298
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	39, 173
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	88, 383
BsmAI	GTCTC	2 cut(s)	92, 152
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	4 cut(s)	36, 67, 69, 109
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	322, 328
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	43, 226
BspPI	GGATC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	111
BsrI	ACTGG	2 cut(s)	287, 354
BssECI	CCNNGG	3 cut(s)	67, 82, 402
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	2 cut(s)	141, 378
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	309, 336
BstDSI	CCRYGG	2 cut(s)	67, 82
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	92, 152
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 251
BstNSI	RCATGY	3 cut(s)	172, 215, 526
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	4 cut(s)	289, 292, 424, 427
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	2 cut(s)	67, 82
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	317
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr42I	CCGCGG	1 cut(s)	70
CseI	GACGC	1 cut(s)	72
CviAII	CATG	3 cut(s)	169, 212, 523
DdeI	CTNAG	2 cut(s)	309, 336
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	227, 453
EcoICRI	GAGCTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	172, 215, 526
FaiI	YATR	7 cut(s)	170, 213, 357, 363, 381, 488, 524
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	168, 211, 522
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	7 cut(s)	36, 67, 70, 303, 306, 438, 441
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	7 cut(s)	36, 67, 70, 303, 306, 438, 441
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	7 cut(s)	36, 67, 70, 303, 306, 438, 441
GsaI	CCCAGC	2 cut(s)	91, 302
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	39, 173
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	172, 215, 526
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	78, 100
HpaII	CCGG	2 cut(s)	39, 173
Hpy166II	GTNNAC	2 cut(s)	16, 329
Hpy188I	TCNGA	6 cut(s)	58, 207, 258, 323, 337, 433
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	16, 329
Hpy99I	CGWCG	2 cut(s)	20, 62
HpyAV	CCTTC	5 cut(s)	16, 83, 265, 412, 438
HpyCH4III	ACNGT	2 cut(s)	141, 378
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 251
HpyF3I	CTNAG	2 cut(s)	309, 336
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	172, 215, 526
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	3 cut(s)	25, 41, 116
LpnPI	CCDG	7 cut(s)	52, 73, 186, 300, 312, 335, 492
Lsp1109I	GCAGC	4 cut(s)	289, 292, 424, 427
LweI	GCATC	2 cut(s)	241, 397
MaeI	CTAG	1 cut(s)	516
MaeIII	GTNAC	2 cut(s)	164, 518
MalI	GATC	1 cut(s)	453
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	1 cut(s)	451
MboII	GAAGA	2 cut(s)	229, 280
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	4, 136, 268, 294, 343, 377
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	69, 302
MspI	CCGG	2 cut(s)	39, 173
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	41, 251
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	3 cut(s)	172, 215, 526
NlaIV	GGNNCC	2 cut(s)	43, 226
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	164
NspI	RCATGY	3 cut(s)	172, 215, 526
NspV	TTCGAA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	522
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	7 cut(s)	37, 68, 71, 304, 307, 439, 442
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	30
PspFI	CCCAGC	2 cut(s)	87, 298
PspN4I	GGNNCC	2 cut(s)	43, 226
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	30
SacII	CCGCGG	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	14
SatI	GCNGC	7 cut(s)	36, 67, 70, 303, 306, 438, 441
Sau3AI	GATC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	15, 30, 156, 304, 404, 439, 507, 513
SfaNI	GCATC	2 cut(s)	241, 397
Sfr303I	CCGCGG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SsiI	CCGC	4 cut(s)	36, 67, 69, 109
SspMI	CTAG	1 cut(s)	516
SstI	GAGCTC	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	141, 378
TaqI	TCGA	3 cut(s)	15, 76, 96
TauI	GCSGC	3 cut(s)	38, 69, 72
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	4 cut(s)	302, 305, 437, 440
Tsp45I	GTSAC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	317
XceI	RCATGY	3 cut(s)	172, 215, 526
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.