Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002979

Physical Location & Seq

Genomic Coordinates Reverse (-)

74079993 .. 74082300

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0552700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCAATGTCGAAGATGAAAAATGAGAGCTTTGATCTACATGAAGATGTTATAGTGAAGATTCTTTGTCGGTTGCCGGTCAAGTCCTTGATCCGGTTCACTTGTGTGTCGAAACGGTGGCGTTCTATTATCATTTCTGATCCTCAATTTGGCAAGTCTCACCTTCAACTAGCATCACAGCAGGGCAGCCTCTGTCAAAAAGTCCTCATCTGCATCTACCCTACAGATAAAACCGTAGAAGGTCGAATTCCCAATCGTTTTGAAGATAACATGCCTTGGTTGCCCTCTCGATTTCAATCCTTGGAAGGTTATTCTTCAGTCAATAATCTCACCTTCCCGTCGGAGGAGAAGAGCCAACGAGTAATGGCCTTGTGCAATGGTTTGGTACTTCTAGGTGAATCCTATAAAAGTTATTTTAAGAACTTGTCTATCTGGAATCCATCAACTGGATTTTTCCGCAAAATACCTGCTCCAAGTTTTGGGGTTGAGATGACAAAATCAACAGAGGAGAAAAAGAACTGTAGCTTTTTATATCATGGTTTTGGTCAAGTGTCAGCCACTGACGACTACAAGCTTGTTTTCATAAAACCTGCTCTCGGTGATTTTGTTGAAGTTCATGTGTTCTCACTCAGAGCCAACGTTTGGAAAGTTATTAAATCTCCCTCTTCATTGACCGGCTGGATTGACGGACAGGGGGCTCTTTCAAATGGAGCGATTCATTGGGTCAACTATCCAACAGGTGGGAAAATAGAACCAACTATGGTTGCTTTTGATTTATCAGAGGAGGAGTTCCGGCAAGTGCCATTACCTGTTTTCAACCAAAATGAAGATGGCACGCATGTGACTTGTGTAAGAACTCAGGTTCTTTTAGGAGGGTGCCTTGGTGTATGGTCTGCGGATCCTTATGGGTATATGACATTTTGGGTGATGAGAGAGTATGGTGTGCCTGAATCTTGGGTTAAACTCATTCAATTGGGTCGAGATGATTTACCAGATGAGTTCACTTCATGCACTAGCTGGGAACCTAGTTTCGTTACAGAAGGCGGTACAGTTATGATCAAACTGCTTGGCAAAGAACGTAGATTTATTACAGAAGACGGTACAGTATATATGATCAAACTGCCTGGCAAGAATGAGTTGGTCTGGATTGATTGCCATCAAGAAGAGAATACAGTGTGCAGCGCCCATTATAGACTTGAGGAGGTGCCTGAGTGTACGATATTTGACATAACTGTATATGATGAAACTTTAGTTTCAGTACCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TIP41

Protein Analysis

422

Amino Acids

47.91

Weight (kDa)

5.54

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 47	2e-09	F-box domain
FBA_3	PF08268	98 - 322	3e-16	F-box associated beta propeller domain
FBA_1	PF07734	113 - 381	8.1e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34270
fragaria_vesca	FvH4_2g04780 FvH4_2g04780
malus_domestica	MD00G1108700.v1.1 MD10G1100100.v1.1
prunus_persica	Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1 Prupe.8G137600_v2.0.a1
pyrus_communis	pycom10g08600
rosa_chinensis	RchiOBHm_Chr6g0254491 RchiOBHm_Chr6g0257511
rosa_laevigata	RLG00000014907 RLG00000014910
rosa_multiflora	Rmu_co8254825.1_g000001 Rmu_sc0002113.1_g000001 Rmu_sc0004702.1_g000006 Rmu_sc0004702.1_g000007 Rmu_sc0009578.1_g000010 Rmu_sc0023759.1_g000001 Rmu_ssc0000481.1_g000008
rosa_roxburghii	Rroxscaffold_7G00210720 Rroxscaffold_7G00210760
rosa_rugosa	Rorug05G0552600 Rorug05G0552700 Rorug05G0552700 Rorug05G0552800
rosa_samantha	Rh6AG069900 Rh6AG088000 Rh6BG062400 Rh6BG080800 Rh6CG062200 Rh6CG062300 Rh6CG077000 Rh6DG059200 Rh6DG059300 Rh6DG073100
rosa_wichuraiana	Rw6G006120 Rw6G007800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	475, 598
AccB1I	GGYRCC	2 cut(s)	876, 1204
AccB7I	CCANNNNNTGG	4 cut(s)	446, 479, 642, 740
AciI	CCGC	3 cut(s)	457, 896, 1044
AclI	AACGTT	1 cut(s)	639
AclWI	GGATC	4 cut(s)	85, 134, 893, 906
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	5 cut(s)	387, 1048, 1102, 1216, 1260
AfiI	CCNNNNNNNGG	8 cut(s)	93, 149, 343, 446, 479, 596, 642, 740
AgsI	TTSAA	7 cut(s)	167, 263, 296, 611, 705, 817, 971
AjnI	CCWGG	1 cut(s)	1123
AleI	CACNNNNGTG	2 cut(s)	104, 839
AluBI	AGCT	4 cut(s)	30, 525, 574, 1017
AluI	AGCT	4 cut(s)	30, 525, 574, 1017
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	4 cut(s)	85, 134, 893, 906
AlwNI	CAGNNNCTG	3 cut(s)	192, 560, 1262
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	186, 1179
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	1184
AsuHPI	GGTGA	5 cut(s)	152, 322, 407, 611, 937
BamHI	GGATCC	1 cut(s)	898
BanI	GGYRCC	2 cut(s)	876, 1204
BanII	GRGCYC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	1101
BbvI	GCAGC	2 cut(s)	198, 1191
BccI	CCATC	3 cut(s)	448, 824, 1164
BciT130I	CCWGG	1 cut(s)	1125
BclI	TGATCA	2 cut(s)	1056, 1113
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	4 cut(s)	170, 392, 1014, 1026
BfmI	CTRYAG	2 cut(s)	222, 520
BfoI	RGCGCY	1 cut(s)	1185
BfuAI	ACCTGC	2 cut(s)	475, 598
BisI	GCNGC	2 cut(s)	187, 1180
BlsI	GCNGC	2 cut(s)	188, 1181
Bme1390I	CCNGG	1 cut(s)	1125
BmiI	GGNNCC	4 cut(s)	878, 900, 1023, 1206
BmrFI	CCNGG	1 cut(s)	1125
BmsI	GCATC	2 cut(s)	182, 222
BpiI	GAAGAC	1 cut(s)	1101
BpuEI	CTTGAG	1 cut(s)	1217
BsaBI	GATNNNNATC	2 cut(s)	295, 1155
BsaJI	CCNNGG	3 cut(s)	275, 300, 880
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	8 cut(s)	93, 149, 343, 446, 479, 596, 642, 740
Bse118I	RCCGGY	2 cut(s)	76, 674
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	2 cut(s)	295, 1155
BseBI	CCWGG	1 cut(s)	1125
BseDI	CCNNGG	3 cut(s)	275, 300, 880
BseJI	GATNNNNATC	2 cut(s)	295, 1155
BseLI	CCNNNNNNNGG	8 cut(s)	93, 149, 343, 446, 479, 596, 642, 740
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	3 cut(s)	643, 872, 1200
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	5 cut(s)	359, 521, 797, 800, 1214
BseXI	GCAGC	2 cut(s)	198, 1191
BseYI	CCCAGC	1 cut(s)	1017
BsgI	GTGCAG	1 cut(s)	1198
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	876, 1204
BsiSI	CCGG	4 cut(s)	77, 94, 675, 793
BslI	CCNNNNNNNGG	8 cut(s)	93, 149, 343, 446, 479, 596, 642, 740
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
BspACI	CCGC	3 cut(s)	457, 896, 1044
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	642, 871, 1201
BspLI	GGNNCC	4 cut(s)	878, 900, 1023, 1206
BspMI	ACCTGC	2 cut(s)	475, 598
BspPI	GGATC	4 cut(s)	85, 134, 893, 906
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	876, 1204
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	2 cut(s)	76, 674
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	2 cut(s)	76, 674
BssECI	CCNNGG	3 cut(s)	275, 300, 880
BssMI	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
BssT1I	CCWWGG	3 cut(s)	275, 300, 880
Bst2UI	CCWGG	1 cut(s)	1125
Bst4CI	ACNGT	8 cut(s)	117, 235, 521, 1051, 1100, 1105, 1174, 1234
Bst6I	CTCTTC	3 cut(s)	344, 670, 1158
BstC8I	GCNNGC	1 cut(s)	836
BstDEI	CTNAG	3 cut(s)	629, 858, 1209
BstH2I	RGCGCY	1 cut(s)	1185
BstHHI	GCGC	1 cut(s)	1184
BstKTI	GATC	6 cut(s)	37, 93, 142, 901, 1059, 1116
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	1125
BstNSI	RCATGY	2 cut(s)	274, 842
BstSCI	CCNGG	1 cut(s)	1123
BstSFI	CTRYAG	2 cut(s)	222, 520
BstV1I	GCAGC	2 cut(s)	198, 1191
BstV2I	GAAGAC	1 cut(s)	1101
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	558, 1179
BveI	ACCTGC	2 cut(s)	475, 598
Cac8I	GCNNGC	1 cut(s)	836
CaiI	CAGNNNCTG	3 cut(s)	192, 560, 1262
CfoI	GCGC	1 cut(s)	1184
Cfr10I	RCCGGY	2 cut(s)	76, 674
Csp6I	GTAC	5 cut(s)	386, 1047, 1101, 1215, 1259
CviAII	CATG	6 cut(s)	41, 271, 536, 617, 839, 1008
CviQI	GTAC	5 cut(s)	386, 1047, 1101, 1215, 1259
DdeI	CTNAG	3 cut(s)	629, 858, 1209
DpnI	GATC	6 cut(s)	36, 92, 141, 900, 1058, 1115
DpnII	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
Eam1104I	CTCTTC	3 cut(s)	344, 670, 1158
EarI	CTCTTC	3 cut(s)	344, 670, 1158
Eco130I	CCWWGG	3 cut(s)	275, 300, 880
Eco24I	GRGCYC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	1123
EcoT14I	CCWWGG	3 cut(s)	275, 300, 880
EcoT38I	GRGCYC	1 cut(s)	700
ErhI	CCWWGG	3 cut(s)	275, 300, 880
FaeI	CATG	6 cut(s)	44, 274, 539, 620, 842, 1011
FatI	CATG	6 cut(s)	40, 270, 535, 616, 838, 1007
FbaI	TGATCA	2 cut(s)	1056, 1113
Fnu4HI	GCNGC	2 cut(s)	187, 1180
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	2 cut(s)	187, 1180
FspBI	CTAG	4 cut(s)	170, 392, 1014, 1026
GlaI	GCGC	1 cut(s)	1183
GluI	GCNGC	2 cut(s)	187, 1180
GsaI	CCCAGC	1 cut(s)	1021
HaeII	RGCGCY	1 cut(s)	1185
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	4 cut(s)	77, 94, 675, 793
HhaI	GCGC	1 cut(s)	1184
Hin1II	CATG	6 cut(s)	44, 274, 539, 620, 842, 1011
Hin6I	GCGC	1 cut(s)	1182
HinP1I	GCGC	1 cut(s)	1182
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	61, 398, 436, 715, 950
HpaII	CCGG	4 cut(s)	77, 94, 675, 793
HphI	GGTGA	5 cut(s)	152, 322, 407, 611, 937
Hpy166II	GTNNAC	4 cut(s)	99, 727, 1002, 1215
Hpy188I	TCNGA	4 cut(s)	139, 343, 632, 781
Hpy188III	TCNNGA	5 cut(s)	288, 433, 980, 1144, 1160
Hpy8I	GTNNAC	4 cut(s)	99, 727, 1002, 1215
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	5 cut(s)	173, 233, 299, 343, 1034
HpyCH4III	ACNGT	8 cut(s)	117, 235, 521, 1051, 1100, 1105, 1174, 1234
HpyCH4IV	ACGT	2 cut(s)	639, 1078
HpyCH4V	TGCA	4 cut(s)	213, 375, 1011, 1179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	3 cut(s)	629, 858, 1209
HpySE526I	ACGT	2 cut(s)	639, 1078
Hsp92II	CATG	6 cut(s)	44, 274, 539, 620, 842, 1011
HspAI	GCGC	1 cut(s)	1182
Ksp22I	TGATCA	2 cut(s)	1056, 1113
Kzo9I	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	2 cut(s)	475, 710
Lsp1109I	GCAGC	2 cut(s)	198, 1191
LweI	GCATC	2 cut(s)	182, 222
MaeI	CTAG	4 cut(s)	170, 392, 1014, 1026
MaeII	ACGT	2 cut(s)	639, 1078
MaeIII	GTNAC	2 cut(s)	841, 1033
MalI	GATC	6 cut(s)	36, 92, 141, 900, 1058, 1115
MboI	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	3 cut(s)	146, 246, 971
MmeI	TCCRAC	2 cut(s)	321, 758
MseI	TTAA	3 cut(s)	417, 654, 960
MslI	CAYNNNNRTG	3 cut(s)	45, 104, 839
MspI	CCGG	4 cut(s)	77, 94, 675, 793
MspR9I	CCNGG	1 cut(s)	1125
MunI	CAATTG	1 cut(s)	971
MvaI	CCWGG	1 cut(s)	1125
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
NlaIII	CATG	6 cut(s)	44, 274, 539, 620, 842, 1011
NlaIV	GGNNCC	4 cut(s)	878, 900, 1023, 1206
NmuCI	GTSAC	1 cut(s)	841
NspI	RCATGY	2 cut(s)	274, 842
OliI	CACNNNNGTG	2 cut(s)	104, 839
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	5 cut(s)	61, 398, 436, 715, 950
PflMI	CCANNNNNTGG	4 cut(s)	446, 479, 642, 740
PkrI	GCNGC	2 cut(s)	188, 1181
Psp1406I	AACGTT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	1123
PspFI	CCCAGC	1 cut(s)	1017
PspGI	CCWGG	1 cut(s)	1123
PspN4I	GGNNCC	4 cut(s)	878, 900, 1023, 1206
PstNI	CAGNNNCTG	3 cut(s)	192, 560, 1262
PsuI	RGATCY	1 cut(s)	898
RsaI	GTAC	5 cut(s)	387, 1048, 1102, 1216, 1260
RsaNI	GTAC	5 cut(s)	386, 1047, 1101, 1215, 1259
RseI	CAYNNNNRTG	3 cut(s)	45, 104, 839
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	417, 654, 960
SatI	GCNGC	2 cut(s)	187, 1180
Sau3AI	GATC	6 cut(s)	34, 90, 139, 898, 1056, 1113
ScrFI	CCNGG	1 cut(s)	1125
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	182, 222
SfcI	CTRYAG	2 cut(s)	222, 520
SmiMI	CAYNNNNRTG	3 cut(s)	45, 104, 839
SmlI	CTYRAG	1 cut(s)	1196
SmoI	CTYRAG	1 cut(s)	1196
Sse9I	AATT	3 cut(s)	146, 246, 971
SsiI	CCGC	3 cut(s)	457, 896, 1044
SspMI	CTAG	4 cut(s)	170, 392, 1014, 1026
StyD4I	CCNGG	1 cut(s)	1123
StyI	CCWWGG	3 cut(s)	275, 300, 880
TaaI	ACNGT	8 cut(s)	117, 235, 521, 1051, 1100, 1105, 1174, 1234
TaiI	ACGT	2 cut(s)	642, 1081
TaqI	TCGA	5 cut(s)	11, 110, 244, 289, 979
TasI	AATT	3 cut(s)	146, 246, 971
TfiI	GAWTC	5 cut(s)	61, 398, 436, 715, 950
Tru1I	TTAA	3 cut(s)	417, 654, 960
Tru9I	TTAA	3 cut(s)	417, 654, 960
TscAI	CASTG	2 cut(s)	565, 1179
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	2 cut(s)	186, 1179
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	9 cut(s)	32, 57, 571, 605, 657, 707, 840, 996, 1257
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	565, 1179
Van91I	CCANNNNNTGG	4 cut(s)	446, 479, 642, 740
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	2 cut(s)	274, 842
XcmI	CCANNNNNNNNNTGG	1 cut(s)	827
XspI	CTAG	4 cut(s)	170, 392, 1014, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.