FvH4_2g04780

TIP41-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002979
Physical Location & Seq
Forward (+)
3713433 .. 3718611
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04780.t1

Sequence Viewer

Length: 864 bp
ATGGAAGTAGAGGTCGACGAGAAGGAGCTCAAAGCAGCCGGAGCGGAGTTATTCTCCGACGGACGCCACGGCATTCGAATCCACGGCTGGGAAATCGAGACTCGCAAGCGCTCCATTCTCAACTCCTCCACCCACGAACTGTGGGAGGAGAAGCTGGAGACTTGTCACATGCCGGAGATGATATTCGGGGAGAGTTGTTTGGTTCTGAAGCACGTGAAGAGTGGCACCACTATCCACTTCAATGCCTTTGATGCTCTGATTGGGTGGAAGAAGGAGGCTTTGCCTCCGGTTGAAGTCCCGGCTGCTGCGAAATGGAAGTTCAGATGTAAACCCTCCGAGCAAGTAATACTGGACTATGACTATACATTCACAACACCATATGAAGGAAGTGAAACTATCACTTTGGATGAAGACAAGCATGAAGGAGGAGAGGTATCTAAGGAGACCTGCAATCTCAACTGGGAGGACTGCAAAGAAAAAATTGATGTGGTTGCATTGGCATCTAAAGAGCCTATTCTCTTTTATGATGAGGTAGTCTTGTATGAAGATGAATTGGCGGATAATGGTGTGTCACTTCTAACTGTAAAAGTGAGAGTCATGCCGAGCGGTTGGTTTCTCCTCTTGCGATTCTGGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGAAAATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTACCTTCAAAGCTTTGGCTGCAAAGGGATACCCTTCTGAAGCTGCTGCTTACAACGATCCAAGTATCATCAGCCAAAGGCTTCCAGTGGTCATGAATAAGACCCAAAAGTTAAAGCCACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TIP41

Protein Analysis

288

Amino Acids

32.85

Weight (kDa)

5.33

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIP41 PF04176 60 - 252 1.2e-57 TIP41-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 2 cut(s) 44, 606
AccI GTMKAC 1 cut(s) 15
AciI CCGC 3 cut(s) 44, 557, 606
AclWI GGATC 1 cut(s) 791
AcuI CTGAAG 2 cut(s) 227, 798
AcvI CACGTG 1 cut(s) 214
AcyI GRCGYC 1 cut(s) 64
AfeI AGCGCT 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 88, 383
AgsI TTSAA 4 cut(s) 241, 293, 692, 748
AluBI AGCT 6 cut(s) 28, 154, 726, 740, 752, 782
AluI AGCT 6 cut(s) 28, 154, 726, 740, 752, 782
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 92, 152, 437
AlwI GGATC 1 cut(s) 791
Aor51HI AGCGCT 1 cut(s) 110
ApeKI GCWGC 7 cut(s) 35, 302, 305, 726, 758, 782, 785
AspLEI GCGC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 30
BbrPI CACGTG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 7 cut(s) 47, 289, 292, 713, 745, 769, 772
BccI CCATC 1 cut(s) 638
BceAI ACGGC 2 cut(s) 85, 100
BcgI CGANNNNNNTGC 2 cut(s) 708, 742
BciVI GTATCC 2 cut(s) 661, 761
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 92, 152, 437
BfoI RGCGCY 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 2 cut(s) 661, 761
BisI GCNGC 7 cut(s) 36, 303, 306, 727, 759, 783, 786
BlsI GCNGC 7 cut(s) 37, 304, 307, 728, 760, 784, 787
Bme1390I CCNGG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 2 cut(s) 241, 509
BmuI ACTGGG 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 2 cut(s) 176, 751
Bpu14I TTCGAA 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 64
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 67, 82
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 383
Bse1I ACTGG 3 cut(s) 354, 464, 824
BseDI CCNNGG 2 cut(s) 67, 82
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 2 cut(s) 88, 383
BseNI ACTGG 3 cut(s) 354, 464, 824
BseRI GAGGAG 4 cut(s) 115, 161, 441, 608
BseXI GCAGC 7 cut(s) 47, 289, 292, 713, 745, 769, 772
BseYI CCCAGC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 4 cut(s) 39, 173, 287, 299
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 88, 383
BsmAI GTCTC 3 cut(s) 92, 152, 437
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 796
BspACI CCGC 3 cut(s) 44, 557, 606
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 1 cut(s) 791
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 2 cut(s) 44, 606
BsrI ACTGG 3 cut(s) 354, 464, 824
BssECI CCNNGG 2 cut(s) 67, 82
BssMI GATC 1 cut(s) 796
BssNI GRCGYC 1 cut(s) 64
Bst4CI ACNGT 3 cut(s) 141, 583, 683
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 64
BstBAI YACGTR 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 438, 635
BstDSI CCRYGG 2 cut(s) 67, 82
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 799
BstMAI GTCTC 3 cut(s) 92, 152, 437
BstMBI GATC 1 cut(s) 796
BstMWI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 297
BstV1I GCAGC 7 cut(s) 47, 289, 292, 713, 745, 769, 772
BstV2I GAAGAC 1 cut(s) 417
BsuI GTATCC 2 cut(s) 661, 761
BtgI CCRYGG 2 cut(s) 67, 82
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 679, 831
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 831
CfoI GCGC 1 cut(s) 111
CseI GACGC 1 cut(s) 72
CviAII CATG 4 cut(s) 169, 419, 598, 832
DdeI CTNAG 2 cut(s) 438, 635
DpnI GATC 1 cut(s) 798
DpnII GATC 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EciI GGCGGA 1 cut(s) 572
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 437
Eco47III AGCGCT 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 227, 798
Eco72I CACGTG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 30
FaeI CATG 4 cut(s) 172, 422, 601, 835
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 168, 418, 597, 831
FauNDI CATATG 1 cut(s) 379
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 7 cut(s) 36, 303, 306, 727, 759, 783, 786
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 7 cut(s) 36, 303, 306, 727, 759, 783, 786
GlaI GCGC 1 cut(s) 110
GluI GCNGC 7 cut(s) 36, 303, 306, 727, 759, 783, 786
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 176, 751
HaeII RGCGCY 1 cut(s) 112
HapII CCGG 4 cut(s) 39, 173, 287, 299
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 4 cut(s) 172, 422, 601, 835
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 4 cut(s) 78, 100, 594, 627
HpaII CCGG 4 cut(s) 39, 173, 287, 299
Hpy166II GTNNAC 2 cut(s) 16, 329
Hpy188I TCNGA 6 cut(s) 58, 207, 258, 323, 337, 778
Hpy188III TCNNGA 3 cut(s) 97, 719, 832
Hpy8I GTNNAC 2 cut(s) 16, 329
Hpy99I CGWCG 2 cut(s) 20, 62
HpyAV CCTTC 6 cut(s) 16, 265, 377, 416, 754, 783
HpyCH4III ACNGT 3 cut(s) 141, 583, 683
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 450, 471, 494, 679, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
HpyF3I CTNAG 2 cut(s) 438, 635
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 4 cut(s) 172, 422, 601, 835
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 796
LmnI GCTCC 3 cut(s) 25, 41, 116
Lsp1109I GCAGC 7 cut(s) 47, 289, 292, 713, 745, 769, 772
LweI GCATC 2 cut(s) 241, 509
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 164, 570
MalI GATC 1 cut(s) 798
MbiI CCGCTC 2 cut(s) 44, 606
MboI GATC 1 cut(s) 796
MboII GAAGA 5 cut(s) 229, 280, 422, 557, 707
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 480, 551
MlyI GAGTC 2 cut(s) 94, 603
MmeI TCCRAC 1 cut(s) 81
MseI TTAA 2 cut(s) 662, 851
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 4 cut(s) 39, 173, 287, 299
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 41, 251, 631, 758
NciI CCSGG 1 cut(s) 299
NdeI CATATG 1 cut(s) 379
NdeII GATC 1 cut(s) 796
NlaIII CATG 4 cut(s) 172, 422, 601, 835
NlaIV GGNNCC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 627
NmuCI GTSAC 2 cut(s) 164, 570
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 831
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 78, 627
PkrI GCNGC 7 cut(s) 37, 304, 307, 728, 760, 784, 787
PleI GAGTC 2 cut(s) 94, 602
PmaCI CACGTG 1 cut(s) 214
PmlI CACGTG 1 cut(s) 214
PpsI GAGTC 2 cut(s) 94, 602
Ppu21I YACGTR 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 30
PspCI CACGTG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 30
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 662, 851
SatI GCNGC 7 cut(s) 36, 303, 306, 727, 759, 783, 786
Sau3AI GATC 1 cut(s) 796
SchI GAGTC 2 cut(s) 94, 603
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 30
SfaNI GCATC 2 cut(s) 241, 509
SfuI TTCGAA 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 2 cut(s) 480, 551
SsiI CCGC 3 cut(s) 44, 557, 606
SstI GAGCTC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 141, 583, 683
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 15, 76, 96, 718
TasI AATT 2 cut(s) 480, 551
TfiI GAWTC 2 cut(s) 78, 627
Tru1I TTAA 2 cut(s) 662, 851
Tru9I TTAA 2 cut(s) 662, 851
TscAI CASTG 2 cut(s) 686, 831
TseFI GTSAC 2 cut(s) 164, 570
TseI GCWGC 7 cut(s) 35, 302, 305, 726, 758, 782, 785
Tsp45I GTSAC 2 cut(s) 164, 570
TspDTI ATGAA 6 cut(s) 396, 423, 435, 558, 564, 848
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 2 cut(s) 686, 831
XceI RCATGY 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.