Rorug01G0221200

Xylem serine proteinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014944
Physical Location & Seq
Forward (+)
31699530 .. 31702448
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0221200.1

Sequence Viewer

Length: 1296 bp
ATGTTGCAATCAACAATAGTGGGCAAGAACAAGAAGAGGAAGTCAATAAAGGCAAGCCAACCACGCCCACAAACACGTCTGCAATCACAAGCACAGTCAGAACATGCATTCGTCACCCCAACTAGGGGGCAAATAGAAATGTTTGGTGAACCAGGTCAGAATGTTTCTTATGCACAGGCCAGGAAAACCCGTGGCATTACACAGGGGTTGGGAACTCAAGCTCTGATCAATGCTTGCAAGCAGAGGATTCCAATCCATACGAATGGTGAGCACAAGCTCCCCCAGAATGTTCGAGCCAATATTAAGTTTAGGTCGGAGATTGGGATACAAACGCGTCAGAATGCTCCACTTATGGTCAAGCGCTGGAAAGAAGTCTCTGCTTTGGATAAGGAAAAAATCACCAAGGCCTTGGCGATTAAGTTTGATTTTGATGGTACGGACCCGGTTGTAAGGAAATTTATTGAGGCTCATATGTCCAAGTCGTACTCACTATGGAGGAGCAGGCTGAACAAACATTACAAGCAGCATGCTTATGACCCTGAATATGCACGGGCACACCCTCCCGTAAAGCTGTTTTATAATAGAGAAATGGCTGAATGGGAGTGGTTGTGTGATGAATTATTCACAGATGAGGACTATCAGAAACGTTGCAAGATAAACTCTGCTAACCGGAATAAGCAAGAATATGGTCATCTTGAGAGTTCACCACTCTACCCGAAACATATAGCAGCTGCGCAAGAGATACCAGTAGAATCAATAAAAAAGGATTCTGAGTATGATGATGATGAGGATGATGTTGATGATGATAACGATGTTGATTATAATGTTGATGATGATTATGTTGGTTATAATGATCATGTTGATGTTAATGATGAGGATGATGCTGATGATAATGTTGGAAGAAACCTAGAAGTTGAGGTTGATAATGTTGAAGAGCGTGGAAATCAAAGTGTATCCACTAATACTGAGAAAAGTAGTGGAAAGAGAAAGCTCTCATCCTTTACCAATGTGCATGGTGAGAGTTCAAAGAAGAGACATGAAATAGCTGAGCGAAGATTTACCGATTCTGCACCTCTGCGTGGTAATGATGAGGTCCAATCAGTTTCAAAGGAGGTTAGCGATGAAGAATACTTGATGCAATGTTTTGGAATTTTGAACAAGATGGACGAAATTGATGATGACAGTTACTCAAAAGCCTTGAAGCTCTTCCGCGGTGATGCTACTTGGAGAAAGCTGTTTGTGGGAATGCCGGAGAAGAGGAGAAAGAACTTCATCCTCAATCTTTTCTGTACATGA

Protein Analysis

431

Amino Acids

49.74

Weight (kDa)

6.12

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00230 AT4G00230
fragaria_vesca FvH4_7g12740
malus_domestica MD02G1196900.v1.1
prunus_persica Prupe.2G151900_v2.0.a1
pyrus_communis pycom02g16020
rosa_chinensis RchiOBHm_Chr1g0351761
rosa_laevigata RLG00000028385
rosa_multiflora Rmu_sc0001933.1_g000013
rosa_roxburghii Rroxscaffold_4G00303570
rosa_rugosa Rorug01G0221200
rosa_samantha Rh1AG235200 Rh1BG205700 Rh1CG219800 Rh1DG232700
rosa_wichuraiana Rw1G020470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 579, 822, 849
Acc16I TGCGCA 1 cut(s) 735
AccII CGCG 2 cut(s) 334, 1212
AciI CCGC 2 cut(s) 1210, 1212
AclI AACGTT 1 cut(s) 646
AcsI RAATTY 2 cut(s) 455, 1149
AfaI GTAC 3 cut(s) 436, 485, 1291
AfeI AGCGCT 1 cut(s) 362
AfiI CCNNNNNNNGG 4 cut(s) 123, 124, 125, 1079
AflIII ACRYGT 2 cut(s) 74, 332
AgsI TTSAA 5 cut(s) 932, 1026, 1107, 1156, 1201
AjiI CACGTC 1 cut(s) 77
AjnI CCWGG 2 cut(s) 151, 179
AluBI AGCT 8 cut(s) 221, 277, 571, 731, 991, 1046, 1204, 1234
AluI AGCT 8 cut(s) 221, 277, 571, 731, 991, 1046, 1204, 1234
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 379, 1027
Aor51HI AGCGCT 1 cut(s) 362
AoxI GGCC 2 cut(s) 177, 405
ApeKI GCWGC 3 cut(s) 523, 728, 731
ApoI RAATTY 2 cut(s) 455, 1149
Asp700I GAANNNNTTC 1 cut(s) 1205
AspLEI GCGC 2 cut(s) 363, 736
AspS9I GGNCC 2 cut(s) 439, 1093
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 7 cut(s) 106, 158, 278, 391, 696, 1028, 1226
AvaII GGWCC 2 cut(s) 439, 1093
BaeGI GKGCMC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 535, 718, 740
BccI CCATC 2 cut(s) 425, 1156
BciT130I CCWGG 2 cut(s) 153, 181
BciVI GTATCC 2 cut(s) 318, 964
BclI TGATCA 2 cut(s) 225, 853
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 379, 1027
BfaI CTAG 2 cut(s) 123, 908
BfoI RGCGCY 1 cut(s) 364
BfuI GTATCC 2 cut(s) 318, 964
BisI GCNGC 3 cut(s) 524, 729, 732
BlpI GCTNAGC 1 cut(s) 1047
BlsI GCNGC 3 cut(s) 525, 730, 733
Bme1390I CCNGG 3 cut(s) 153, 181, 443
Bme18I GGWCC 2 cut(s) 439, 1093
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 439, 1093
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 3 cut(s) 153, 181, 443
BmsI GCATC 3 cut(s) 871, 1125, 1207
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 201, 716
BpuMI CCSGG 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 4 cut(s) 190, 402, 408, 1210
BsaWI WCCGGW 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 124, 125, 1079
Bse1I ACTGG 1 cut(s) 746
Bse3DI GCAATG 1 cut(s) 1145
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 2 cut(s) 153, 181
BseDI CCNNGG 4 cut(s) 190, 402, 408, 1210
BseGI GGATG 4 cut(s) 796, 883, 995, 1272
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 4 cut(s) 123, 124, 125, 1079
BseMI GCAATG 1 cut(s) 1145
BseMII CTCAG 3 cut(s) 762, 957, 1038
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 2 cut(s) 511, 1273
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 3 cut(s) 535, 718, 740
BsgI GTGCAG 1 cut(s) 1053
Bsh1236I CGCG 2 cut(s) 334, 1212
BshFI GGCC 2 cut(s) 179, 407
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 3 cut(s) 443, 670, 1250
BslI CCNNNNNNNGG 4 cut(s) 123, 124, 125, 1079
BsmAI GTCTC 2 cut(s) 379, 1027
BsmI GAATGC 3 cut(s) 107, 346, 1251
BsnI GGCC 2 cut(s) 179, 407
Bsp1286I GDGCHC 2 cut(s) 273, 556
Bsp1407I TGTACA 1 cut(s) 1289
Bsp143I GATC 2 cut(s) 225, 853
Bsp1720I GCTNAGC 1 cut(s) 1047
BspACI CCGC 2 cut(s) 1210, 1212
BspANI GGCC 2 cut(s) 179, 407
BspCNI CTCAG 3 cut(s) 763, 958, 1039
BspFNI CGCG 2 cut(s) 334, 1212
BspLI GGNNCC 1 cut(s) 441
BspQI GCTCTTC 2 cut(s) 927, 1211
BsrDI GCAATG 1 cut(s) 1145
BsrGI TGTACA 1 cut(s) 1289
BsrI ACTGG 1 cut(s) 746
BssECI CCNNGG 4 cut(s) 190, 402, 408, 1210
BssMI GATC 2 cut(s) 225, 853
BssT1I CCWWGG 2 cut(s) 402, 408
Bst2UI CCWGG 2 cut(s) 153, 181
Bst4CI ACNGT 2 cut(s) 96, 1184
Bst6I CTCTTC 5 cut(s) 29, 927, 1025, 1211, 1250
BstAUI TGTACA 1 cut(s) 1289
BstC8I GCNNGC 5 cut(s) 55, 235, 239, 503, 528
BstDEI CTNAG 3 cut(s) 771, 966, 1047
BstDSI CCRYGG 2 cut(s) 190, 1210
BstF5I GGATG 4 cut(s) 796, 883, 995, 1272
BstFNI CGCG 2 cut(s) 334, 1212
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 2 cut(s) 363, 736
BstKTI GATC 2 cut(s) 228, 856
BstMAI GTCTC 2 cut(s) 379, 1027
BstMBI GATC 2 cut(s) 225, 853
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 2 cut(s) 153, 181
BstNSI RCATGY 2 cut(s) 107, 530
BstSCI CCNGG 3 cut(s) 151, 179, 441
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 2 cut(s) 334, 1212
BstV1I GCAGC 3 cut(s) 535, 718, 740
BstXI CCANNNNNNTGG 2 cut(s) 263, 409
BsuI GTATCC 2 cut(s) 318, 964
BsuRI GGCC 2 cut(s) 179, 407
BtgI CCRYGG 2 cut(s) 190, 1210
BtgZI GCGATG 1 cut(s) 1134
BtrI CACGTC 1 cut(s) 77
BtsCI GGATG 4 cut(s) 796, 883, 995, 1272
Cac8I GCNNGC 5 cut(s) 55, 235, 239, 503, 528
CfoI GCGC 2 cut(s) 363, 736
Cfr13I GGNCC 2 cut(s) 439, 1093
Cfr42I CCGCGG 1 cut(s) 1213
CseI GACGC 1 cut(s) 323
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 3 cut(s) 435, 484, 1290
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 6 cut(s) 104, 527, 857, 1013, 1037, 1293
CviQI GTAC 3 cut(s) 435, 484, 1290
DdeI CTNAG 3 cut(s) 771, 966, 1047
DpnI GATC 2 cut(s) 227, 855
DpnII GATC 2 cut(s) 225, 853
Eam1104I CTCTTC 5 cut(s) 29, 927, 1025, 1211, 1250
EarI CTCTTC 5 cut(s) 29, 927, 1025, 1211, 1250
Eco130I CCWWGG 2 cut(s) 402, 408
Eco147I AGGCCT 1 cut(s) 407
Eco47I GGWCC 2 cut(s) 439, 1093
Eco47III AGCGCT 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 151, 179
EcoT14I CCWWGG 2 cut(s) 402, 408
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 402, 408
FaeI CATG 6 cut(s) 107, 530, 860, 1016, 1040, 1296
FatI CATG 6 cut(s) 103, 526, 856, 1012, 1036, 1292
FauNDI CATATG 1 cut(s) 471
FbaI TGATCA 2 cut(s) 225, 853
Fnu4HI GCNGC 3 cut(s) 524, 729, 732
FokI GGATG 4 cut(s) 803, 890, 982, 1259
Fsp4HI GCNGC 3 cut(s) 524, 729, 732
FspBI CTAG 2 cut(s) 123, 908
FspI TGCGCA 1 cut(s) 735
GlaI GCGC 2 cut(s) 362, 735
GluI GCNGC 3 cut(s) 524, 729, 732
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 2 cut(s) 179, 407
HapII CCGG 3 cut(s) 443, 670, 1250
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 363, 736
Hin1II CATG 6 cut(s) 107, 530, 860, 1016, 1040, 1296
Hin6I GCGC 2 cut(s) 361, 734
HinP1I GCGC 2 cut(s) 361, 734
HinfI GANTC 4 cut(s) 247, 752, 767, 1064
HpaII CCGG 3 cut(s) 443, 670, 1250
HphI GGTGA 7 cut(s) 106, 158, 278, 391, 696, 1028, 1226
Hpy166II GTNNAC 2 cut(s) 149, 704
Hpy188I TCNGA 7 cut(s) 100, 159, 225, 316, 339, 642, 772
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 2 cut(s) 149, 704
HpyCH4III ACNGT 2 cut(s) 96, 1184
HpyCH4IV ACGT 2 cut(s) 76, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 771, 966, 1047
HpySE526I ACGT 2 cut(s) 76, 646
Hsp92II CATG 6 cut(s) 107, 530, 860, 1016, 1040, 1296
HspAI GCGC 2 cut(s) 361, 734
Ksp22I TGATCA 2 cut(s) 225, 853
KspI CCGCGG 1 cut(s) 1213
Kzo9I GATC 2 cut(s) 225, 853
LguI GCTCTTC 2 cut(s) 927, 1211
LmnI GCTCC 3 cut(s) 282, 349, 498
Lsp1109I GCAGC 3 cut(s) 535, 718, 740
LweI GCATC 3 cut(s) 871, 1125, 1207
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 2 cut(s) 123, 908
MaeII ACGT 2 cut(s) 76, 646
MaeIII GTNAC 2 cut(s) 112, 1184
MalI GATC 2 cut(s) 227, 855
MboI GATC 2 cut(s) 225, 853
MboII GAAGA 8 cut(s) 46, 912, 944, 1042, 1065, 1136, 1198, 1267
MhlI GDGCHC 2 cut(s) 273, 556
MluCI AATT 4 cut(s) 455, 617, 1149, 1170
MluI ACGCGT 1 cut(s) 332
MmeI TCCRAC 2 cut(s) 294, 877
Mph1103I ATGCAT 1 cut(s) 109
MroXI GAANNNNTTC 1 cut(s) 1205
MseI TTAA 3 cut(s) 303, 417, 867
MslI CAYNNNNRTG 3 cut(s) 261, 531, 861
MspA1I CMGCKG 2 cut(s) 731, 1212
MspI CCGG 3 cut(s) 443, 670, 1250
MspR9I CCNGG 3 cut(s) 153, 181, 443
Mva1269I GAATGC 3 cut(s) 107, 346, 1251
MvaI CCWGG 2 cut(s) 153, 181
MvnI CGCG 2 cut(s) 334, 1212
MwoI GCNNNNNNNGC 1 cut(s) 63
NciI CCSGG 1 cut(s) 443
NdeI CATATG 1 cut(s) 471
NdeII GATC 2 cut(s) 225, 853
NlaIII CATG 6 cut(s) 107, 530, 860, 1016, 1040, 1296
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 112
NsbI TGCGCA 1 cut(s) 735
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 2 cut(s) 107, 530
PaeI GCATGC 1 cut(s) 530
PceI AGGCCT 1 cut(s) 407
PciSI GCTCTTC 2 cut(s) 927, 1211
PctI GAATGC 3 cut(s) 107, 346, 1251
PdmI GAANNNNTTC 1 cut(s) 1205
PfeI GAWTC 4 cut(s) 247, 752, 767, 1064
PkrI GCNGC 3 cut(s) 525, 730, 733
PsiI TTATAA 3 cut(s) 579, 822, 849
Psp1406I AACGTT 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 151, 179
PspGI CCWGG 2 cut(s) 151, 179
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 2 cut(s) 439, 1093
PsrI GAACNNNNNNTAC 2 cut(s) 500, 532
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 3 cut(s) 436, 485, 1291
RsaNI GTAC 3 cut(s) 435, 484, 1290
RseI CAYNNNNRTG 3 cut(s) 261, 531, 861
SacII CCGCGG 1 cut(s) 1213
SapI GCTCTTC 2 cut(s) 927, 1211
SaqAI TTAA 3 cut(s) 303, 417, 867
SatI GCNGC 3 cut(s) 524, 729, 732
Sau3AI GATC 2 cut(s) 225, 853
Sau96I GGNCC 2 cut(s) 439, 1093
ScrFI CCNGG 3 cut(s) 153, 181, 443
SduI GDGCHC 2 cut(s) 273, 556
SexAI ACCWGGT 1 cut(s) 151
SfaNI GCATC 3 cut(s) 871, 1125, 1207
Sfr303I CCGCGG 1 cut(s) 1213
SgrBI CCGCGG 1 cut(s) 1213
SinI GGWCC 2 cut(s) 439, 1093
SmiMI CAYNNNNRTG 3 cut(s) 261, 531, 861
SmlI CTYRAG 2 cut(s) 216, 695
SmoI CTYRAG 2 cut(s) 216, 695
SphI GCATGC 1 cut(s) 530
Sse9I AATT 4 cut(s) 455, 617, 1149, 1170
SseBI AGGCCT 1 cut(s) 407
SsiI CCGC 2 cut(s) 1210, 1212
SspI AATATT 1 cut(s) 301
SspMI CTAG 2 cut(s) 123, 908
StuI AGGCCT 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 151, 179, 441
StyI CCWWGG 2 cut(s) 402, 408
TaaI ACNGT 2 cut(s) 96, 1184
TaiI ACGT 2 cut(s) 79, 649
TaqI TCGA 1 cut(s) 292
TasI AATT 4 cut(s) 455, 617, 1149, 1170
TatI WGTACW 1 cut(s) 1289
TfiI GAWTC 4 cut(s) 247, 752, 767, 1064
Tru1I TTAA 3 cut(s) 303, 417, 867
Tru9I TTAA 3 cut(s) 303, 417, 867
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 3 cut(s) 523, 728, 731
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 4 cut(s) 630, 1053, 1137, 1261
TspGWI ACGGA 1 cut(s) 452
VpaK11BI GGWCC 2 cut(s) 439, 1093
XapI RAATTY 2 cut(s) 455, 1149
XceI RCATGY 2 cut(s) 107, 530
XmnI GAANNNNTTC 1 cut(s) 1205
XspI CTAG 2 cut(s) 123, 908
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.