Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005758

Physical Location & Seq

Genomic Coordinates Forward (+)

42519162 .. 42521704

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGGACACCACCGCGAACCCAACCACATACAATCTCTTCGTAAACCTCTTGGAAGGCAAAACCCTAAACCTAAAATTCACGACCCCCAACGTCTCCGCCGCCTCCATCAAGCACCGCCTCTACGAAATCACCAAAATACCCCTCCGCCACCAGCGCCTCCTCACCGGGACGCGCCACCTCGGCGACGGCGACGACTCCGTACTCTCCTGCTCCGACGCGCCGCACCACTTCCCGACGGTCCACCTGCTGCTGAGGCTCGTCGGGGGGAAGGGCGGGTTCGGGTCGCTCCTCCGTGGCGCGGCGACGAAGGCGGGGCAGAAGAAGACGAGCAACTTCGACGCGTGTCGGGATATGAGTGGGCGGAGGCTGAGGCATGTGAATGCGGAGAATAGGCTGCAGGAGTGGAGGGCGTTGGAGGAGCAGAGGAAGATGGAGAAGAAGGGGGAGCAGTTTCTGAAGAGCCTGGCGAAGAAGGGCAAGAAGGGAACGGGGGACGCCGCGACGGAGAAGTATGTGAAGAAGTATAGGGAGGAGTCGGCCAGGTGCGTTTCGGAGGTGTTGGATTCGGTGAAGGAGGCCATGAGTGGGAAGAGGAAGGGTAAGGCTGTGGTGAAGAATGCCCAGCCCAAGTCGAAAAGGATGAAAATTTGGATGGGAAGAAATGACAGTGATACAGAGGAAGATGACAGTGATAATGAGATGGAGAAATCAACCATATCAAATAATGGGAATAGCTCAGATTTGAATAAGGAAGCTGAGGGCAGTTTGGATTCAGTGACTGGTGGGAAACAAGATGGTGAGACCTCAGGTAGAGGCTCATGTGAGAGTGGCTCTGAGGAAGAGAAAGAGATGGTTGTTCATACTGTTCAAGAATCTATTGGCATGGGTGGACCAGTGATTCAGGATGAGAAGATAGCTATACCTTGTTCAGCTCCTGATGCTGTTCTGGGAGTTGAAGCAATGCTAGATGAAAAGATGGATTCCAATGGAACTGAGATGGGAAATATGGAAGAATTAATTAGTCAACCTCAGAAGATTCATAAGTCAGGTGATGGGCAGGGAATTGAAAGTACATTGATTGTATCCGAAGCCAATGGTTCTTCAGAGTCCAGTCCAGTTGAGAACACTGAAGAGATGGAGAAGCCGCTAAATTTTGATGAGTTCAGTTCAGCAGCAGAAATGGAGGTTCTTGGCGCGGAAAGGTTGAAATCGGAATTGCAAGCTCATGGGTTAAAATGTGGGGGTACTTTGCGAGAGCGTGCTGCCAGGCTTTTTATGCTTAAATCTACCCCTATAGAGAAGATTCCAAAGAAGCTGCTCGCAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1 APH DCP2 NUDIX

Protein Analysis

444

Amino Acids

48.51

Weight (kDa)

6.6

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDE2	PF22782	89 - 192	1.5e-23	Splicing regulator SDE2, SDE2 domain
SDE2_2C	PF13297	370 - 443	7.9e-28	Replication stress response SDE2 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39190 AT2G39190
fragaria_vesca	FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760 FvH4_7g19760
malus_domestica	MD07G1176000.v1.1
prunus_persica	Prupe.8G142600_v2.0.a1 Prupe.8G142600_v2.0.a1 Prupe.8G142600_v2.0.a1 Prupe.8G142600_v2.0.a1 Prupe.8G142600_v2.0.a1
pyrus_communis	pycom07g17020
rosa_chinensis	RchiOBHm_Chr1g0363651
rosa_laevigata	RLG00000027553
rosa_multiflora	Rmu_sc0000548.1_g000012
rosa_roxburghii	Rroxscaffold_4G00293010
rosa_rugosa	Rorug01G0308500
rosa_samantha	Rh1AG317500 Rh1BG280800 Rh1CG297000 Rh1DG312000
rosa_wichuraiana	Rw1G028150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccII	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	77, 648, 1153
AcuI	CTGAAG	3 cut(s)	479, 1089, 1152
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	3 cut(s)	204, 1075, 1249
AfiI	CCNNNNNNNGG	2 cut(s)	301, 588
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	748, 872, 959, 1070, 1210
AjnI	CCWGG	3 cut(s)	465, 542, 1268
AluBI	AGCT	6 cut(s)	738, 758, 920, 935, 1226, 1318
AluI	AGCT	6 cut(s)	738, 758, 920, 935, 1226, 1318
Alw26I	GTCTC	2 cut(s)	100, 797
AlwNI	CAGNNNCTG	3 cut(s)	457, 782, 938
AoxI	GGCC	2 cut(s)	540, 579
ApeKI	GCWGC	5 cut(s)	250, 397, 1175, 1265, 1318
ApoI	RAATTY	3 cut(s)	77, 648, 1153
AseI	ATTAAT	1 cut(s)	1019
AspLEI	GCGC	5 cut(s)	159, 177, 223, 302, 1199
AspS9I	GGNCC	2 cut(s)	241, 893
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	6 cut(s)	124, 157, 583, 625, 812, 1064
AvaII	GGWCC	2 cut(s)	241, 893
AxyI	CCTNAGG	1 cut(s)	808
BbsI	GAAGAC	1 cut(s)	332
BbvCI	CCTCAGC	3 cut(s)	254, 371, 759
BbvI	GCAGC	5 cut(s)	237, 384, 1187, 1252, 1305
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	3 cut(s)	467, 544, 1270
BciVI	GTATCC	1 cut(s)	1096
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	100, 797
BfaI	CTAG	1 cut(s)	968
BfmI	CTRYAG	2 cut(s)	398, 1296
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	1096
BglI	GCCNNNNNGGC	1 cut(s)	183
Bme1390I	CCNGG	4 cut(s)	169, 467, 544, 1270
Bme18I	GGWCC	2 cut(s)	241, 893
BmgT120I	GGNCC	2 cut(s)	241, 893
BmrFI	CCNGG	4 cut(s)	169, 467, 544, 1270
BmsI	GCATC	1 cut(s)	931
BoxI	GACNNNNGTC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
Bpu10I	CCTNAGC	3 cut(s)	254, 371, 759
BpuMI	CCSGG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	2 cut(s)	181, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 588
Bse1I	ACTGG	4 cut(s)	787, 896, 1113, 1118
Bse21I	CCTNAGG	1 cut(s)	808
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	3 cut(s)	467, 544, 1270
BseDI	CCNNGG	2 cut(s)	181, 295
BseGI	GGATG	3 cut(s)	648, 660, 913
BseLI	CCNNNNNNNGG	2 cut(s)	301, 588
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	8 cut(s)	245, 362, 750, 753, 822, 828, 987, 1046
BseNI	ACTGG	4 cut(s)	787, 896, 1113, 1118
BseRI	GAGGAG	4 cut(s)	152, 281, 434, 548
BseXI	GCAGC	5 cut(s)	237, 384, 1187, 1252, 1305
BseYI	CCCAGC	1 cut(s)	624
Bsh1236I	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
BshFI	GGCC	2 cut(s)	542, 581
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	184, 509
BslI	CCNNNNNNNGG	2 cut(s)	301, 588
BsmAI	GTCTC	2 cut(s)	100, 797
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	184, 509
BsmI	GAATGC	2 cut(s)	388, 625
BsnI	GGCC	2 cut(s)	542, 581
Bso31I	GGTCTC	1 cut(s)	797
BspANI	GGCC	2 cut(s)	542, 581
BspCNI	CTCAG	8 cut(s)	246, 363, 751, 752, 821, 829, 988, 1045
BspFNI	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	4 cut(s)	787, 896, 1113, 1118
BssECI	CCNNGG	2 cut(s)	181, 295
BssNI	GRCGYC	1 cut(s)	498
Bst2UI	CCWGG	3 cut(s)	467, 544, 1270
Bst4CI	ACNGT	4 cut(s)	241, 671, 692, 868
Bst6I	CTCTTC	5 cut(s)	44, 455, 587, 837, 1128
BstACI	GRCGYC	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	1224, 1263, 1323
BstDEI	CTNAG	8 cut(s)	254, 371, 739, 759, 808, 837, 996, 1032
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	648, 660, 913
BstFNI	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	5 cut(s)	159, 177, 223, 302, 1199
BstMAI	GTCTC	2 cut(s)	100, 797
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 183, 256, 311, 941, 1279
BstNI	CCWGG	3 cut(s)	467, 544, 1270
BstNSI	RCATGY	1 cut(s)	380
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	167, 465, 542, 1268
BstSFI	CTRYAG	2 cut(s)	398, 1296
BstUI	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
BstV1I	GCAGC	5 cut(s)	237, 384, 1187, 1252, 1305
BstV2I	GAAGAC	1 cut(s)	332
Bsu36I	CCTNAGG	1 cut(s)	808
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	2 cut(s)	542, 581
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	648, 660, 913
BtsIMutI	CAGTG	5 cut(s)	676, 697, 783, 903, 1128
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	1224, 1263, 1323
CaiI	CAGNNNCTG	3 cut(s)	457, 782, 938
CfoI	GCGC	5 cut(s)	159, 177, 223, 302, 1199
Cfr13I	GGNCC	2 cut(s)	241, 893
CseI	GACGC	4 cut(s)	181, 227, 350, 506
Csp6I	GTAC	3 cut(s)	203, 1074, 1248
CviAII	CATG	5 cut(s)	377, 583, 822, 886, 1229
CviQI	GTAC	3 cut(s)	203, 1074, 1248
DdeI	CTNAG	8 cut(s)	254, 371, 739, 759, 808, 837, 996, 1032
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	5 cut(s)	44, 455, 587, 837, 1128
EarI	CTCTTC	5 cut(s)	44, 455, 587, 837, 1128
EciI	GGCGGA	4 cut(s)	20, 88, 137, 379
Eco31I	GGTCTC	1 cut(s)	797
Eco47I	GGWCC	2 cut(s)	241, 893
Eco57I	CTGAAG	3 cut(s)	479, 1089, 1152
Eco81I	CCTNAGG	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	465, 542, 1268
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	5 cut(s)	380, 586, 825, 889, 1232
FaqI	GGGAC	2 cut(s)	184, 509
FatI	CATG	5 cut(s)	376, 582, 821, 885, 1228
FauI	CCCGC	2 cut(s)	269, 307
FokI	GGATG	3 cut(s)	655, 667, 920
FspBI	CTAG	1 cut(s)	968
GlaI	GCGC	5 cut(s)	158, 176, 222, 301, 1198
GsaI	CCCAGC	1 cut(s)	628
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	542, 581
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	4 cut(s)	181, 227, 350, 506
HhaI	GCGC	5 cut(s)	159, 177, 223, 302, 1199
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	5 cut(s)	380, 586, 825, 889, 1232
Hin6I	GCGC	5 cut(s)	157, 175, 221, 300, 1197
HinP1I	GCGC	5 cut(s)	157, 175, 221, 300, 1197
HincII	GTYRAC	1 cut(s)	1028
HindII	GTYRAC	1 cut(s)	1028
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	6 cut(s)	124, 157, 583, 625, 812, 1064
Hpy166II	GTNNAC	4 cut(s)	46, 244, 893, 1028
Hpy188I	TCNGA	9 cut(s)	217, 459, 556, 742, 838, 1035, 1090, 1108, 1216
Hpy188III	TCNNGA	6 cut(s)	82, 235, 350, 872, 905, 938
Hpy8I	GTNNAC	4 cut(s)	46, 244, 893, 1028
Hpy99I	CGWCG	8 cut(s)	191, 197, 221, 241, 266, 310, 344, 508
HpyAV	CCTTC	8 cut(s)	50, 265, 304, 436, 469, 478, 568, 592
HpyCH4III	ACNGT	4 cut(s)	241, 671, 692, 868
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	400, 1222
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 183, 256, 311, 941, 1279
HpyF3I	CTNAG	8 cut(s)	254, 371, 739, 759, 808, 837, 996, 1032
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	5 cut(s)	380, 586, 825, 889, 1232
HspAI	GCGC	5 cut(s)	157, 175, 221, 300, 1197
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	5 cut(s)	218, 294, 421, 448, 940
Lsp1109I	GCAGC	5 cut(s)	237, 384, 1187, 1252, 1305
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	1 cut(s)	968
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	778
MluCI	AATT	7 cut(s)	77, 648, 1016, 1020, 1065, 1153, 1217
MluI	ACGCGT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	191, 545, 1118
MmeI	TCCRAC	3 cut(s)	240, 396, 543
MseI	TTAA	3 cut(s)	1019, 1235, 1284
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	4 cut(s)	169, 467, 544, 1270
Mva1269I	GAATGC	2 cut(s)	388, 625
MvaI	CCWGG	3 cut(s)	467, 544, 1270
MvnI	CGCG	7 cut(s)	17, 175, 221, 302, 344, 503, 1199
MwoI	GCNNNNNNNGC	6 cut(s)	156, 183, 256, 311, 941, 1279
NciI	CCSGG	1 cut(s)	169
NlaIII	CATG	5 cut(s)	380, 586, 825, 889, 1232
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	778
NspI	RCATGY	1 cut(s)	380
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	2 cut(s)	388, 625
PfeI	GAWTC	7 cut(s)	566, 773, 875, 901, 983, 1039, 1306
PleI	GAGTC	3 cut(s)	191, 544, 1117
PpsI	GAGTC	3 cut(s)	191, 544, 1117
PshAI	GACNNNNGTC	1 cut(s)	345
PshBI	ATTAAT	1 cut(s)	1019
Psp6I	CCWGG	3 cut(s)	465, 542, 1268
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	3 cut(s)	465, 542, 1268
PspPI	GGNCC	2 cut(s)	241, 893
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	3 cut(s)	457, 782, 938
RsaI	GTAC	3 cut(s)	204, 1075, 1249
RsaNI	GTAC	3 cut(s)	203, 1074, 1248
RseI	CAYNNNNRTG	1 cut(s)	381
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	1019, 1235, 1284
Sau96I	GGNCC	2 cut(s)	241, 893
SchI	GAGTC	3 cut(s)	191, 545, 1118
ScrFI	CCNGG	4 cut(s)	169, 467, 544, 1270
SfaNI	GCATC	1 cut(s)	931
SfcI	CTRYAG	2 cut(s)	398, 1296
SinI	GGWCC	2 cut(s)	241, 893
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	7 cut(s)	77, 648, 1016, 1020, 1065, 1153, 1217
SspMI	CTAG	1 cut(s)	968
StyD4I	CCNGG	4 cut(s)	167, 465, 542, 1268
TaaI	ACNGT	4 cut(s)	241, 671, 692, 868
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	339, 635
TasI	AATT	7 cut(s)	77, 648, 1016, 1020, 1065, 1153, 1217
TatI	WGTACW	1 cut(s)	1073
TauI	GCSGC	5 cut(s)	104, 226, 305, 503, 1150
TfiI	GAWTC	7 cut(s)	566, 773, 875, 901, 983, 1039, 1306
Tru1I	TTAA	3 cut(s)	1019, 1235, 1284
Tru9I	TTAA	3 cut(s)	1019, 1235, 1284
TscAI	CASTG	5 cut(s)	676, 697, 783, 903, 1135
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	5 cut(s)	250, 397, 1175, 1265, 1318
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	4 cut(s)	659, 851, 987, 1031
TspGWI	ACGGA	3 cut(s)	190, 284, 521
TspRI	CASTG	5 cut(s)	676, 697, 783, 903, 1135
VpaK11BI	GGWCC	2 cut(s)	241, 893
VspI	ATTAAT	1 cut(s)	1019
XapI	RAATTY	3 cut(s)	77, 648, 1153
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.