Rorug01G0371200
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013923
Physical Location & Seq
Forward (+)
48505505 .. 48508813
3309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371200.1

Sequence Viewer

Length: 762 bp
ATGGGCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCAATGGAACAATCGATGAGGTTAAGAAGATCGTGAACTTGCTCAATGAGGGAAAAGTGCCGTCACAAGATGTTGTGGAGGTTGTGGTTAGCCCACCGTATGTGTTTCTTCCATTGGTGAAGAGCACTTTGAGGCCAGATTTCCATGTTGCGGCACAGAACTGCTGGGTCAAGAAGGGTGGTGCTTTCACCGGTGAAGTTAGTGCTGAGATGCTTAAAAATCTTGAGGTTCCATGGGTCATCCTTGGTCATTCCGAAAGAAGAGCTCTTTTGGGTGAAACCAATGAGTTTGTTGGGGATAAGGTTGCTTATGCACTTTCCCAAGGGTTGAAGGTGATCGCCTGTGTTGGTGAGACCCTTGAGCAGCGAGAAGCTGGATCGACTGTGGAAGTTGTTGCTGCACAAACAAAGGCAATTGCAGAGAAAGTGAAAGATTGGACCAACATTGTTTTGGCTTATGAGCCAGTGTGGGCTATTGGAACTGGGAAGGTTGCATCTCCAGCTCAGGCTCAGGAAGTGCATTGTGAATTGAGGAAATGGCTTCATGCAAACACAAGTCCTGAGGTTGCTGCAACAACCAGGATTATATATGGAGGCTCTGTCAATGGTGCAAACTCCAAAGAGCTGGCAGGTCAGCCCGATCTTGATGGGTTTTTGGTTGGCGGAGCTTCCTTAAAGCCCGAGTTTATTGACATTATCAACGCAGCTGAGGTGAAGAAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

27.22

Weight (kDa)

6.14

Isoelectric Point (pI)

23.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIM PF00121 6 - 248 9.5e-90 Triosephosphate isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56370
fragaria_vesca FvH4_7g25950
malus_domestica MD01G1167900.v1.1 MD07G1233900.v1.1
prunus_persica Prupe.2G264300_v2.0.a1
pyrus_communis pycom01g18090 pycom07g21170
rosa_chinensis RchiOBHm_Chr1g0372331
rosa_laevigata RLG00000026907
rosa_multiflora Rmu_sc0001755.1_g000008
rosa_roxburghii Rroxscaffold_4G00285050
rosa_rugosa Rorug01G0371200
rosa_samantha Rh1AG379600 Rh1BG343100 Rh1CG356600 Rh1DG374300
rosa_wichuraiana Rw1G033370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 656
AciI CCGC 3 cut(s) 24, 188, 699
AclWI GGATC 1 cut(s) 421
AfiI CCNNNNNNNGG 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 1 cut(s) 614
AluBI AGCT 6 cut(s) 302, 410, 539, 661, 704, 743
AluI AGCT 6 cut(s) 302, 410, 539, 661, 704, 743
Alw21I GWGCWC 2 cut(s) 164, 304
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 400, 434, 605, 740
AsiGI ACCGGT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 474
AsuHPI GGTGA 7 cut(s) 166, 217, 242, 323, 382, 398, 760
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 1 cut(s) 474
AxyI CCTNAGG 1 cut(s) 597
BanII GRGCYC 1 cut(s) 304
Bbv12I GWGCWC 2 cut(s) 164, 304
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 412, 421, 592, 752
BccI CCATC 1 cut(s) 677
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 760
BfuAI ACCTGC 1 cut(s) 656
BisI GCNGC 6 cut(s) 25, 189, 401, 435, 606, 741
BlsI GCNGC 6 cut(s) 26, 190, 402, 436, 607, 742
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 237, 539
BmuI ACTGGG 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 3 cut(s) 540, 546, 744
BpuEI CTTGAG 2 cut(s) 281, 416
Bsa29I ATCGAT 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 269, 280, 358
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 3 cut(s) 35, 500, 523
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 616
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 269, 280, 358
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 5 cut(s) 234, 554, 560, 588, 735
BseNI ACTGG 3 cut(s) 35, 500, 523
BseXI GCAGC 4 cut(s) 412, 421, 592, 752
BseYI CCCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 164, 304
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 164, 304
Bsp143I GATC 4 cut(s) 66, 372, 413, 676
Bsp19I CCATGG 1 cut(s) 269
BspACI CCGC 3 cut(s) 24, 188, 699
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 5 cut(s) 235, 553, 559, 589, 736
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 656
BspPI GGATC 1 cut(s) 421
BspQI GCTCTTC 2 cut(s) 152, 292
BspTNI GGTCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 3 cut(s) 35, 500, 523
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 3 cut(s) 269, 280, 358
BssMI GATC 4 cut(s) 66, 372, 413, 676
BssT1I CCWWGG 3 cut(s) 269, 280, 358
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 135, 421
Bst6I CTCTTC 2 cut(s) 152, 292
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 5 cut(s) 243, 540, 546, 597, 744
BstDSI CCRYGG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 276
BstKTI GATC 4 cut(s) 69, 375, 416, 679
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 66, 372, 413, 676
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 614
BstV1I GCAGC 4 cut(s) 412, 421, 592, 752
BstXI CCANNNNNNTGG 1 cut(s) 661
Bsu15I ATCGAT 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 597
BsuRI GGCC 1 cut(s) 172
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 507
BveI ACCTGC 1 cut(s) 656
Cac8I GCNNGC 1 cut(s) 663
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 474
ClaI ATCGAT 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 227
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 3 cut(s) 182, 270, 581
DdeI CTNAG 5 cut(s) 243, 540, 546, 597, 744
DpnI GATC 4 cut(s) 68, 374, 415, 678
DpnII GATC 4 cut(s) 66, 372, 413, 676
Eam1104I CTCTTC 2 cut(s) 152, 292
EarI CTCTTC 2 cut(s) 152, 292
EciI GGCGGA 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 3 cut(s) 269, 280, 358
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 3 cut(s) 269, 280, 358
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 3 cut(s) 269, 280, 358
FaeI CATG 3 cut(s) 185, 273, 584
FaiI YATR 9 cut(s) 138, 183, 271, 348, 495, 582, 623, 625, 627
FatI CATG 3 cut(s) 181, 269, 580
Fnu4HI GCNGC 6 cut(s) 25, 189, 401, 435, 606, 741
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 6 cut(s) 25, 189, 401, 435, 606, 741
FspBI CTAG 1 cut(s) 760
GluI GCNGC 6 cut(s) 25, 189, 401, 435, 606, 741
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 228
Hin1II CATG 3 cut(s) 185, 273, 584
HpaII CCGG 1 cut(s) 228
HphI GGTGA 7 cut(s) 166, 217, 242, 323, 382, 398, 760
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 6 cut(s) 70, 208, 260, 548, 596, 680
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 205, 361, 517
HpyCH4III ACNGT 2 cut(s) 135, 421
HpyCH4V TGCA 9 cut(s) 39, 350, 437, 455, 530, 556, 584, 608, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 5 cut(s) 243, 540, 546, 597, 744
Hsp92II CATG 3 cut(s) 185, 273, 584
Kzo9I GATC 4 cut(s) 66, 372, 413, 676
LguI GCTCTTC 2 cut(s) 152, 292
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 4 cut(s) 412, 421, 592, 752
LweI GCATC 2 cut(s) 237, 539
MaeI CTAG 1 cut(s) 760
MaeIII GTNAC 1 cut(s) 99
MalI GATC 4 cut(s) 68, 374, 415, 678
MboI GATC 4 cut(s) 66, 372, 413, 676
MboII GAAGA 5 cut(s) 7, 76, 137, 169, 309
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 164, 304
MluCI AATT 2 cut(s) 450, 563
MnlI CCTC 9 cut(s) 49, 79, 109, 162, 256, 561, 592, 623, 739
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 3 cut(s) 60, 252, 710
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 1 cut(s) 269
NdeII GATC 4 cut(s) 66, 372, 413, 676
NlaIII CATG 3 cut(s) 185, 273, 584
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 99
PciSI GCTCTTC 2 cut(s) 152, 292
PdmI GAANNNNTTC 1 cut(s) 14
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 6 cut(s) 26, 190, 402, 436, 607, 742
Psp124BI GAGCTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 614
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 304
SapI GCTCTTC 2 cut(s) 152, 292
SaqAI TTAA 3 cut(s) 60, 252, 710
SatI GCNGC 6 cut(s) 25, 189, 401, 435, 606, 741
Sau3AI GATC 4 cut(s) 66, 372, 413, 676
Sau96I GGNCC 1 cut(s) 474
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 2 cut(s) 164, 304
SfaNI GCATC 2 cut(s) 237, 539
SgrAI CRCCGGYG 1 cut(s) 227
SinI GGWCC 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 260, 395
SmoI CTYRAG 2 cut(s) 260, 395
Sse9I AATT 2 cut(s) 450, 563
SsiI CCGC 3 cut(s) 24, 188, 699
SspMI CTAG 1 cut(s) 760
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 3 cut(s) 269, 280, 358
TaaI ACNGT 2 cut(s) 135, 421
TaqI TCGA 2 cut(s) 51, 416
TasI AATT 2 cut(s) 450, 563
TauI GCSGC 2 cut(s) 27, 191
Tru1I TTAA 3 cut(s) 60, 252, 710
Tru9I TTAA 3 cut(s) 60, 252, 710
TscAI CASTG 1 cut(s) 507
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 4 cut(s) 400, 434, 605, 740
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.