Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011250

Physical Location & Seq

Genomic Coordinates Forward (+)

56295961 .. 56297741

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0472400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGGGGAGAGGAACCGAAATGGAAAACGACCCGCCGTTTGTGAGGAGTCTAAGGGGTTCTGCTTGAGGATTCAGAGTCGTGAGGATCTCAAAGATGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGAAGTATGGAGATCAAATGGCAGACCATATATTCCTGAAGGTTCCCAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAAAAGGGATGGGAAGAGTTTGCTAGCTTTTATTTACTGGACCAGGGCGACTTGGCAACCTTCAGCTCTGAAGGTGAACATGCCCATTTCCAAATACGCATCTTTAGTTGGGACGATATGGAAATATATTACCCTATTCGTGGAGGAGAAGTTGATGTCAGCGGGCCAAAGAGGAAAGAAACAAGAGTTGAAGCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCCAGATCCTCTGCTGATGAACACCAATATGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAAGCCATGTCTTAATGTCCAAATCACAGCTACATCCTTAACCAATCGTGTGTTCATAAATCCAGAATTTGCGTTGGAACATTTCTGTAAAGAAGGCTCTTGTTGTGACTTGTCCTTACAGAATACTCTAGGTGACAGGATTTGGACGGTTCAGTGCATTTCTTACACAATAAGTGATGGAAGAATGCGAACAGTAATATCAGGAGCTGGTTGGAAATCCTTTAGGCAGGACAATCATCTAGAAGAGGGTGACGTCCTAGTGTTGGAGTTGATAGAGGAACGTAGGTGCAGAGTTTCGATAATCCGGGCTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000902 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

280

Amino Acids

32.21

Weight (kDa)

6.67

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 115	3.2e-10	B3 DNA binding domain
B3	PF02362	189 - 278	1.3e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20350
fragaria_vesca	FvH4_1g02030 FvH4_1g02030 FvH4_1g02030
malus_domestica	MD02G1018500.v1.1 MD15G1162500.v1.1
prunus_persica	Prupe.7G252300_v2.0.a1
pyrus_communis	pycom02g01660 pycom15g14610
rosa_chinensis	RchiOBHm_Chr2g0087091
rosa_laevigata	RLG00000015831
rosa_multiflora	Rmu_sc0005550.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153890 Rroxscaffold_3G00239100
rosa_rugosa	Rorug01G0472400
rosa_samantha	Rh2AG025700 Rh2BG025400 Rh2CG026000 Rh2DG025900
rosa_wichuraiana	Rw2G002040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	780
AciI	CCGC	3 cut(s)	33, 113, 399
AclWI	GGATC	2 cut(s)	93, 462
AcsI	RAATTY	1 cut(s)	590
AcuI	CTGAAG	5 cut(s)	185, 283, 327, 453, 459
AcyI	GRCGYC	1 cut(s)	777
AfiI	CCNNNNNNNGG	3 cut(s)	179, 377, 787
AgsI	TTSAA	2 cut(s)	428, 456
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	122, 264, 303, 431, 437, 443, 554, 731
AluI	AGCT	8 cut(s)	122, 264, 303, 431, 437, 443, 554, 731
AlwI	GGATC	2 cut(s)	93, 462
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspS9I	GGNCC	2 cut(s)	277, 401
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	4 cut(s)	204, 323, 668, 785
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	835
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	89, 240, 695
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	830
BfaI	CTAG	5 cut(s)	261, 444, 653, 764, 782
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	281, 830
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	277, 401
BmiI	GGNNCC	2 cut(s)	14, 171
BmrFI	CCNGG	2 cut(s)	281, 830
BmsI	GCATC	1 cut(s)	345
BmtI	GCTAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 377, 787
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	3 cut(s)	234, 251, 557
BseLI	CCNNNNNNNGG	3 cut(s)	179, 377, 787
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	59, 396
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	832
BshFI	GGCC	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	116, 226, 829
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	179, 377, 787
BsmFI	GGGAC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	4 cut(s)	85, 139, 467, 518
BspACI	CCGC	3 cut(s)	33, 113, 399
BspANI	GGCC	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	14, 171
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	93, 462
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	85, 139, 467, 518
BssNI	GRCGYC	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	673, 718
Bst6I	CTCTTC	2 cut(s)	246, 762
BstACI	GRCGYC	1 cut(s)	777
BstC8I	GCNNGC	3 cut(s)	117, 262, 401
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	234, 251, 557
BstKTI	GATC	4 cut(s)	88, 142, 470, 521
BstMBI	GATC	4 cut(s)	85, 139, 467, 518
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	279, 828
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	3 cut(s)	85, 467, 518
BstYI	RGATCY	3 cut(s)	85, 467, 518
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	234, 251, 557
BtsIMutI	CAGTG	1 cut(s)	683
Cac8I	GCNNGC	3 cut(s)	117, 262, 401
CaiI	CAGNNNCTG	1 cut(s)	731
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	277, 401
CviAII	CATG	2 cut(s)	317, 531
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	4 cut(s)	87, 141, 469, 520
DpnII	GATC	4 cut(s)	85, 139, 467, 518
Eam1104I	CTCTTC	2 cut(s)	246, 762
EarI	CTCTTC	2 cut(s)	246, 762
EciI	GGCGGA	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	5 cut(s)	185, 283, 327, 453, 459
EcoRII	CCWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	835
FaeI	CATG	2 cut(s)	320, 534
FaiI	YATR	9 cut(s)	135, 156, 158, 318, 356, 364, 492, 532, 581
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	2 cut(s)	316, 530
FauI	CCCGC	2 cut(s)	40, 392
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	241, 258, 544
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	5 cut(s)	261, 444, 653, 764, 782
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	3 cut(s)	116, 226, 829
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	2 cut(s)	320, 534
HinfI	GANTC	3 cut(s)	47, 70, 76
HpaII	CCGG	3 cut(s)	116, 226, 829
HphI	GGTGA	4 cut(s)	204, 323, 668, 785
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	4 cut(s)	75, 307, 518, 523
Hpy188III	TCNNGA	6 cut(s)	80, 163, 221, 587, 726, 764
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	5 cut(s)	97, 160, 302, 307, 611
HpyCH4III	ACNGT	2 cut(s)	673, 718
HpyCH4IV	ACGT	2 cut(s)	777, 805
HpyCH4V	TGCA	2 cut(s)	681, 813
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	777, 805
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	2 cut(s)	320, 534
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	85, 139, 467, 518
LmnI	GCTCC	1 cut(s)	728
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	5 cut(s)	261, 444, 653, 764, 782
MaeII	ACGT	2 cut(s)	777, 805
MaeIII	GTNAC	4 cut(s)	221, 629, 656, 773
MalI	GATC	4 cut(s)	87, 141, 469, 520
MboI	GATC	4 cut(s)	85, 139, 467, 518
MboII	GAAGA	4 cut(s)	112, 263, 717, 779
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	3 cut(s)	85, 467, 518
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	4 cut(s)	175, 200, 456, 590
MlyI	GAGTC	2 cut(s)	56, 85
MmeI	TCCRAC	3 cut(s)	579, 716, 768
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	2 cut(s)	537, 563
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	122, 399
MspI	CCGG	3 cut(s)	116, 226, 829
MspR9I	CCNGG	2 cut(s)	281, 830
MunI	CAATTG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	281
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	1 cut(s)	830
NdeII	GATC	4 cut(s)	85, 139, 467, 518
NgoMIV	GCCGGC	1 cut(s)	115
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	320, 534
NlaIV	GGNNCC	2 cut(s)	14, 171
NmuCI	GTSAC	4 cut(s)	221, 629, 656, 773
NspI	RCATGY	1 cut(s)	320
PctI	GAATGC	1 cut(s)	714
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	2 cut(s)	55, 84
PpsI	GAGTC	2 cut(s)	55, 84
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	14, 171
PspPI	GGNCC	2 cut(s)	277, 401
PstNI	CAGNNNCTG	1 cut(s)	731
PsuI	RGATCY	3 cut(s)	85, 467, 518
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	537, 563
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	85, 139, 467, 518
Sau96I	GGNCC	2 cut(s)	277, 401
SchI	GAGTC	2 cut(s)	56, 85
ScrFI	CCNGG	2 cut(s)	281, 830
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	4 cut(s)	175, 200, 456, 590
SsiI	CCGC	3 cut(s)	33, 113, 399
SspMI	CTAG	5 cut(s)	261, 444, 653, 764, 782
StyD4I	CCNGG	2 cut(s)	279, 828
TaaI	ACNGT	2 cut(s)	673, 718
TaiI	ACGT	2 cut(s)	780, 808
TaqI	TCGA	1 cut(s)	821
TasI	AATT	4 cut(s)	175, 200, 456, 590
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	2 cut(s)	537, 563
Tru9I	TTAA	2 cut(s)	537, 563
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	4 cut(s)	221, 629, 656, 773
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	4 cut(s)	221, 629, 656, 773
TspDTI	ATGAA	2 cut(s)	495, 568
TspRI	CASTG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	590
XbaI	TCTAGA	1 cut(s)	763
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	5 cut(s)	261, 444, 653, 764, 782
ZraI	GACGTC	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.