Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011250

Physical Location & Seq

Genomic Coordinates Reverse (-)

1693281 .. 1698756

Gene Structure 5476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG025400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGTCGTCGGAGATCGAGGTCGTCGAGGACGACGAGGTCCAAACCCGCGGCGATCACGAATCGGCGGCGGCGGCGGCGGTAGCCGGTTCGGTCAATTCGGGCGGCGGAGAAGCCAATGGGATTGGGGAGGAGAGTCTGCGAAACGACGTGTACACGGCGGCGGCGTACGGCGATTTGGAGAAGCTTCAGAGATTGGTGGAGTGTGAGGGTTGCTCGGTTTCCGAGACCGATGGGCTGGGCTACTACGCGCTCCAGTGGGCCGCCCTTAACAACCGAACTGCCGCCGCCCAGTATATTATAGAGCATGGAGGAGATGTGAATGCGAAGGACCATGCGGGGCAGACAGCATTGCACTGGAGTGCAGTGCGGGGCGCTATCCAGGTTGCGGAGCTATTACTCCAAGAGGGTGCGAGGGTGAATGCGGGGGATATGTATGGCTATCAGACTACACATGTTGCGGCCCAATATGGTCAGACTGCTTTCCTATACCATATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCTTTGCACTGGGCTGCTTATAAAGGTTTTGCTGATTGTATACGTCTTCTTTTGTTTCTGGATGCATATAGAGGGCGCCAAGATAAAGAGGGTTGCACTCCTCTACATTGGGCTGCTATCAGGGGTAACTTGGAGGCATGCACAGTTTTGGTACAAGCTGGGAAAAAGGAGGACTTGATGGTTACAGATAACACTGGCCTTACACCAGCACAACTTGCTTCTGATAAAAACCACAGACAAGTTGCTTTTTTCCTTGGGAATGCTCGAAGGCTGCTTGACAAACGTTGTGATGGGAACAGTCGTCTTGGACAACTTTCAAAACTAGGACTTGCACCAGGACTTTGGTGTATAATCTTTGTGCTCCTTGTGACCTATACTCATTCTGTTATCATAGCACCAAATCTGCCAAAGTTAACAGCCGGCTCAGTTTTTATTGCATGGCTTGGAGTTTTTCTAGCAACTGCAGGGCTGGTTATGTTATATCGGTGTAGCAGTAAAGATCCCGGTTACATCCGAATGAATATCCATGATTCACAAAATATGAAAGATGATGAACCTCTTTTGAAGATTGAGATAAATAATCCGGCCTTGTTAGCTGGTAACTGGTCTCAGCTCTGTGCAACTTGCAAGATTGTCAGGCCTCTTCGCGCAAAGCACTGTTCGACTTGTGACCGTTGTGTTGAACAATTTGACCACCATTGCCCTTGGGTATCCAATTGCATTGGCAAGAAAAACAAATGGGATTTCTTTATTTTCCTTGTTCTTGAAGTTTTGGCAATGTTGACTACTGGAGGAGTCACTCTTACGAGAATTTGGAGTGATCCACTCGGTCCATCTTCATTTGGAGCATGGCTTAATCATGTTGGTACAAGTCATATCGGTGCTATATCATTTTTGATTGTTGATTTCTTCCTCTTCTTCGGTGTGGCCGTTTTGACTGTTGTACAAGCTTCTCAAATCTCGCGAAATATTACAACTAATGAAATGGCAAATGCAATGCGCTATAACTACCTTCGAGGGCCAGGTGGTCGCTTCAGAAACCCATATGATCATGGGATGAAGAAGAATTGCACAGATTTCTTAATCAAGGGCTACAATGAAGATGTGGAATTGATTGAAGAATCAACTCGTGCTGAGGGGACTGGTATGAGGCACATGAATGGGGATTCCCATTCTCACCACACAAATGGCAATGGTCATGTTGCAATCAACGTAAATTCGAATGCATCAGCACATCAAGGTCATGTTCATTCTGCCCATTGCAGCCATAACAATCATGGTAAACCAAAAACGGATAATGTCCCGGTAGGCTTGGGTCTTGGCCTTGGACGGAACGCTTCCCGACCTACTGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000902 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0031410 GO:0031982 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

634

Amino Acids

69.15

Weight (kDa)

6.39

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	52 - 142	2.3e-15	Ankyrin repeats (3 copies)
Ank_4	PF13637	86 - 133	7e-07	Ankyrin repeats (many copies)
Ank_2	PF12796	151 - 237	3.4e-16	Ankyrin repeats (3 copies)
Ank_2	PF12796	207 - 267	4.1e-08	Ankyrin repeats (3 copies)
DHHC	PF01529	386 - 513	2.2e-32	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20350
fragaria_vesca	FvH4_1g02030 FvH4_1g02030 FvH4_1g02030
malus_domestica	MD02G1018500.v1.1 MD15G1162500.v1.1
prunus_persica	Prupe.7G252300_v2.0.a1
pyrus_communis	pycom02g01660 pycom15g14610
rosa_chinensis	RchiOBHm_Chr2g0087091
rosa_laevigata	RLG00000015831
rosa_multiflora	Rmu_sc0005550.1_g000004
rosa_roxburghii	Rroxscaffold_2G00153890 Rroxscaffold_3G00239100
rosa_rugosa	Rorug01G0472400
rosa_samantha	Rh2AG025700 Rh2BG025400 Rh2CG026000 Rh2DG025900
rosa_wichuraiana	Rw2G002040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AasI	GACNNNNNNGTC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	586
AccII	CGCG	4 cut(s)	48, 248, 1194, 1510
AclI	AACGTT	1 cut(s)	829
AclWI	GGATC	2 cut(s)	1040, 1361
AcoI	YGGCCR	1 cut(s)	1473
AcsI	RAATTY	2 cut(s)	1356, 1762
AcuI	CTGAAG	2 cut(s)	170, 1564
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	5 cut(s)	152, 167, 699, 1414, 1491
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	2 cut(s)	147, 451
AgsI	TTSAA	6 cut(s)	501, 864, 1111, 1229, 1313, 1664
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	378, 880, 1567
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	184, 391, 704, 1142, 1159, 1496
AluI	AGCT	6 cut(s)	184, 391, 704, 1142, 1159, 1496
Alw21I	GWGCWC	1 cut(s)	909
Alw26I	GTCTC	2 cut(s)	218, 1158
AlwI	GGATC	2 cut(s)	1040, 1361
AoxI	GGCC	8 cut(s)	258, 459, 742, 1131, 1184, 1473, 1565, 1867
ApeKI	GCWGC	4 cut(s)	560, 659, 817, 1809
ApoI	RAATTY	2 cut(s)	1356, 1762
AspLEI	GCGC	5 cut(s)	250, 374, 624, 1196, 1548
AspS9I	GGNCC	6 cut(s)	37, 258, 328, 460, 1376, 1565
AsuC2I	CCSGG	2 cut(s)	1050, 1850
AsuHPI	GGTGA	2 cut(s)	427, 1715
AsuII	TTCGAA	1 cut(s)	1766
AvaII	GGWCC	3 cut(s)	37, 328, 1376
BanI	GGYRCC	1 cut(s)	621
BauI	CACGAG	1 cut(s)	1674
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	1 cut(s)	909
BbvCI	CCTCAGC	1 cut(s)	1680
BbvI	GCAGC	4 cut(s)	547, 646, 804, 1821
BccI	CCATC	5 cut(s)	224, 530, 718, 830, 1387
BceAI	ACGGC	3 cut(s)	171, 184, 1460
BciT130I	CCWGG	3 cut(s)	380, 882, 1569
BciVI	GTATCC	1 cut(s)	1267
BclI	TGATCA	1 cut(s)	1594
BcnI	CCSGG	2 cut(s)	1050, 1850
BcoDI	GTCTC	2 cut(s)	218, 1158
BfaI	CTAG	2 cut(s)	869, 1001
BfmI	CTRYAG	1 cut(s)	1008
BfoI	RGCGCY	2 cut(s)	375, 625
BfuI	GTATCC	1 cut(s)	1267
Bme1390I	CCNGG	5 cut(s)	380, 882, 1050, 1569, 1850
Bme18I	GGWCC	3 cut(s)	37, 328, 1376
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	37, 258, 328, 460, 1376, 1565
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	5 cut(s)	380, 882, 1050, 1569, 1850
BmrI	ACTGGG	2 cut(s)	283, 565
BmsI	GCATC	2 cut(s)	598, 1781
BmuI	ACTGGG	2 cut(s)	283, 565
BpiI	GAAGAC	1 cut(s)	584
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	3 cut(s)	236, 376, 1356
Bpu10I	CCTNAGC	1 cut(s)	1680
Bpu14I	TTCGAA	1 cut(s)	1766
BpuMI	CCSGG	2 cut(s)	1050, 1850
BsaHI	GRCGYC	1 cut(s)	622
BsaI	GGTCTC	2 cut(s)	218, 1158
BsaJI	CCNNGG	4 cut(s)	46, 799, 1250, 1870
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	2 cut(s)	83, 965
Bse1I	ACTGG	8 cut(s)	253, 289, 359, 560, 745, 1154, 1339, 1693
Bse3DI	GCAATG	6 cut(s)	347, 1243, 1329, 1548, 1744, 1804
BseBI	CCWGG	3 cut(s)	380, 882, 1569
BseDI	CCNNGG	4 cut(s)	46, 799, 1250, 1870
BseGI	GGATG	3 cut(s)	613, 1056, 1608
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	6 cut(s)	347, 1243, 1329, 1548, 1744, 1804
BseMII	CTCAG	3 cut(s)	984, 1169, 1671
BseNI	ACTGG	8 cut(s)	253, 289, 359, 560, 745, 1154, 1339, 1693
BseRI	GAGGAG	4 cut(s)	143, 324, 636, 1353
BseXI	GCAGC	4 cut(s)	547, 646, 804, 1821
BseYI	CCCAGC	2 cut(s)	235, 704
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	4 cut(s)	48, 248, 1194, 1510
BshFI	GGCC	8 cut(s)	260, 461, 744, 1133, 1186, 1475, 1567, 1869
BshNI	GGYRCC	1 cut(s)	621
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	5 cut(s)	84, 966, 1050, 1130, 1850
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	1699, 1832
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	218, 1158
BsmFI	GGGAC	2 cut(s)	1699, 1832
BsmI	GAATGC	5 cut(s)	325, 424, 514, 811, 1774
BsnI	GGCC	8 cut(s)	260, 461, 744, 1133, 1186, 1475, 1567, 1869
Bso31I	GGTCTC	2 cut(s)	218, 1158
Bsp119I	TTCGAA	1 cut(s)	1766
Bsp1286I	GDGCHC	1 cut(s)	909
Bsp1407I	TGTACA	2 cut(s)	150, 1489
Bsp143I	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
Bsp68I	TCGCGA	1 cut(s)	1510
BspANI	GGCC	8 cut(s)	260, 461, 744, 1133, 1186, 1475, 1567, 1869
BspCNI	CTCAG	3 cut(s)	983, 1168, 1672
BspFNI	CGCG	4 cut(s)	48, 248, 1194, 1510
BspLI	GGNNCC	1 cut(s)	623
BspMAI	CTGCAG	1 cut(s)	1012
BspPI	GGATC	2 cut(s)	1040, 1361
BspT104I	TTCGAA	1 cut(s)	1766
BspT107I	GGYRCC	1 cut(s)	621
BspTNI	GGTCTC	2 cut(s)	218, 1158
BsrDI	GCAATG	6 cut(s)	347, 1243, 1329, 1548, 1744, 1804
BsrFI	RCCGGY	2 cut(s)	83, 965
BsrGI	TGTACA	2 cut(s)	150, 1489
BsrI	ACTGG	8 cut(s)	253, 289, 359, 560, 745, 1154, 1339, 1693
BssAI	RCCGGY	2 cut(s)	83, 965
BssECI	CCNNGG	4 cut(s)	46, 799, 1250, 1870
BssMI	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
BssNAI	GTATAC	1 cut(s)	587
BssNI	GRCGYC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	1674
BssT1I	CCWWGG	3 cut(s)	799, 1250, 1870
Bst1107I	GTATAC	1 cut(s)	587
Bst2BI	CACGAG	1 cut(s)	1674
Bst2UI	CCWGG	3 cut(s)	380, 882, 1569
Bst4CI	ACNGT	6 cut(s)	691, 845, 1205, 1220, 1486, 1897
Bst6I	CTCTTC	2 cut(s)	1194, 1466
BstACI	GRCGYC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	2 cut(s)	150, 1489
BstBI	TTCGAA	1 cut(s)	1766
BstC8I	GCNNGC	2 cut(s)	685, 967
BstDEI	CTNAG	4 cut(s)	970, 1155, 1680, 1902
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	613, 1056, 1608
BstFNI	CGCG	4 cut(s)	48, 248, 1194, 1510
BstH2I	RGCGCY	2 cut(s)	375, 625
BstHHI	GCGC	5 cut(s)	250, 374, 624, 1196, 1548
BstKTI	GATC	5 cut(s)	15, 55, 1048, 1369, 1597
BstMAI	GTCTC	2 cut(s)	218, 1158
BstMBI	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 74, 80, 761, 1139
BstNI	CCWGG	3 cut(s)	380, 882, 1569
BstNSI	RCATGY	2 cut(s)	455, 687
BstSCI	CCNGG	5 cut(s)	378, 880, 1048, 1567, 1848
BstSFI	CTRYAG	1 cut(s)	1008
BstUI	CGCG	4 cut(s)	48, 248, 1194, 1510
BstV1I	GCAGC	4 cut(s)	547, 646, 804, 1821
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	1045
BstXI	CCANNNNNNTGG	2 cut(s)	888, 1733
BstYI	RGATCY	1 cut(s)	1045
BstZ17I	GTATAC	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	1267
BsuRI	GGCC	8 cut(s)	260, 461, 744, 1133, 1186, 1475, 1567, 1869
BtgI	CCRYGG	1 cut(s)	46
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	613, 1056, 1608
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	6 cut(s)	260, 352, 369, 553, 738, 1201
BtuMI	TCGCGA	1 cut(s)	1510
Cac8I	GCNNGC	2 cut(s)	685, 967
CfoI	GCGC	5 cut(s)	250, 374, 624, 1196, 1548
Cfr10I	RCCGGY	2 cut(s)	83, 965
Cfr13I	GGNCC	6 cut(s)	37, 258, 328, 460, 1376, 1565
Cfr42I	CCGCGG	1 cut(s)	49
Csp6I	GTAC	5 cut(s)	151, 166, 698, 1413, 1490
CviQI	GTAC	5 cut(s)	151, 166, 698, 1413, 1490
DdeI	CTNAG	4 cut(s)	970, 1155, 1680, 1902
DinI	GGCGCC	1 cut(s)	623
DpnI	GATC	5 cut(s)	14, 54, 1047, 1368, 1596
DpnII	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	1473
Eam1104I	CTCTTC	2 cut(s)	1194, 1466
EarI	CTCTTC	2 cut(s)	1194, 1466
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	3 cut(s)	799, 1250, 1870
Eco147I	AGGCCT	1 cut(s)	1186
Eco31I	GGTCTC	2 cut(s)	218, 1158
Eco47I	GGWCC	3 cut(s)	37, 328, 1376
Eco57I	CTGAAG	2 cut(s)	170, 1564
EcoRII	CCWGG	3 cut(s)	378, 880, 1567
EcoT14I	CCWWGG	3 cut(s)	799, 1250, 1870
EcoT22I	ATGCAT	2 cut(s)	613, 1774
EgeI	GGCGCC	1 cut(s)	623
EheI	GGCGCC	1 cut(s)	623
ErhI	CCWWGG	3 cut(s)	799, 1250, 1870
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 704, 736
FaqI	GGGAC	2 cut(s)	1699, 1832
FauI	CCCGC	4 cut(s)	53, 328, 360, 415
FauNDI	CATATG	1 cut(s)	1591
FbaI	TGATCA	1 cut(s)	1594
FblI	GTMKAC	1 cut(s)	586
FokI	GGATG	3 cut(s)	620, 1043, 1615
FspBI	CTAG	2 cut(s)	869, 1001
GlaI	GCGC	5 cut(s)	249, 373, 623, 1195, 1547
GsaI	CCCAGC	2 cut(s)	239, 708
GsuI	CTGGAG	3 cut(s)	236, 376, 1356
HaeII	RGCGCY	2 cut(s)	375, 625
HaeIII	GGCC	8 cut(s)	260, 461, 744, 1133, 1186, 1475, 1567, 1869
HapII	CCGG	5 cut(s)	84, 966, 1050, 1130, 1850
HhaI	GCGC	5 cut(s)	250, 374, 624, 1196, 1548
Hin1I	GRCGYC	1 cut(s)	622
Hin6I	GCGC	5 cut(s)	248, 372, 622, 1194, 1546
HinP1I	GCGC	5 cut(s)	248, 372, 622, 1194, 1546
HincII	GTYRAC	2 cut(s)	960, 1329
HindII	GTYRAC	2 cut(s)	960, 1329
HindIII	AAGCTT	2 cut(s)	182, 1494
HinfI	GANTC	6 cut(s)	59, 133, 1076, 1341, 1667, 1712
HpaI	GTTAAC	1 cut(s)	960
HpaII	CCGG	5 cut(s)	84, 966, 1050, 1130, 1850
HphI	GGTGA	2 cut(s)	427, 1715
Hpy166II	GTNNAC	6 cut(s)	151, 153, 587, 960, 1329, 1829
Hpy188I	TCNGA	8 cut(s)	10, 189, 223, 444, 474, 769, 1061, 1583
Hpy188III	TCNNGA	6 cut(s)	56, 527, 605, 1310, 1509, 1887
Hpy8I	GTNNAC	6 cut(s)	151, 153, 587, 960, 1329, 1829
Hpy99I	CGWCG	4 cut(s)	10, 26, 35, 149
HpyAV	CCTTC	3 cut(s)	319, 807, 1568
HpyCH4III	ACNGT	6 cut(s)	691, 845, 1205, 1220, 1486, 1897
HpyCH4IV	ACGT	4 cut(s)	147, 589, 829, 1758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 74, 80, 761, 1139
HpyF3I	CTNAG	4 cut(s)	970, 1155, 1680, 1902
HpySE526I	ACGT	4 cut(s)	147, 589, 829, 1758
Hsp92I	GRCGYC	1 cut(s)	622
HspAI	GCGC	5 cut(s)	248, 372, 622, 1194, 1546
KasI	GGCGCC	1 cut(s)	621
KroI	GCCGGC	1 cut(s)	965
KroNI	GCCGGC	1 cut(s)	967
Ksp22I	TGATCA	1 cut(s)	1594
KspAI	GTTAAC	1 cut(s)	960
KspI	CCGCGG	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
LmnI	GCTCC	4 cut(s)	255, 388, 912, 1391
Lsp1109I	GCAGC	4 cut(s)	547, 646, 804, 1821
LweI	GCATC	2 cut(s)	598, 1781
MaeI	CTAG	2 cut(s)	869, 1001
MaeII	ACGT	4 cut(s)	147, 589, 829, 1758
MaeIII	GTNAC	7 cut(s)	671, 727, 913, 1052, 1145, 1214, 1342
MalI	GATC	5 cut(s)	14, 54, 1047, 1368, 1596
MboI	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
MfeI	CAATTG	1 cut(s)	1261
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	1 cut(s)	909
MluCI	AATT	7 cut(s)	94, 1232, 1261, 1356, 1612, 1655, 1762
Mly113I	GGCGCC	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	142, 1350
Mph1103I	ATGCAT	2 cut(s)	613, 1774
MroNI	GCCGGC	1 cut(s)	965
MseI	TTAA	4 cut(s)	267, 959, 1401, 1628
MslI	CAYNNNNRTG	5 cut(s)	357, 1061, 1425, 1704, 1731
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	5 cut(s)	84, 966, 1050, 1130, 1850
MspR9I	CCNGG	5 cut(s)	380, 882, 1050, 1569, 1850
MunI	CAATTG	1 cut(s)	1261
Mva1269I	GAATGC	5 cut(s)	325, 424, 514, 811, 1774
MvaI	CCWGG	3 cut(s)	380, 882, 1569
MvnI	CGCG	4 cut(s)	48, 248, 1194, 1510
MwoI	GCNNNNNNNGC	5 cut(s)	71, 74, 80, 761, 1139
NaeI	GCCGGC	1 cut(s)	967
NarI	GGCGCC	1 cut(s)	622
NciI	CCSGG	2 cut(s)	1050, 1850
NdeI	CATATG	1 cut(s)	1591
NdeII	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
NgoMIV	GCCGGC	1 cut(s)	965
NlaIV	GGNNCC	1 cut(s)	623
NmuCI	GTSAC	3 cut(s)	913, 1214, 1342
NruI	TCGCGA	1 cut(s)	1510
NsiI	ATGCAT	2 cut(s)	613, 1774
NspI	RCATGY	2 cut(s)	455, 687
NspV	TTCGAA	1 cut(s)	1766
OliI	CACNNNNGTG	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	687
PceI	AGGCCT	1 cut(s)	1186
PciI	ACATGT	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	5 cut(s)	21, 27, 30, 161, 1473
PctI	GAATGC	5 cut(s)	325, 424, 514, 811, 1774
PdiI	GCCGGC	1 cut(s)	967
PfeI	GAWTC	4 cut(s)	59, 1076, 1667, 1712
Pfl23II	CGTACG	1 cut(s)	165
PflFI	GACNNNGTC	1 cut(s)	35
PleI	GAGTC	2 cut(s)	141, 1349
PluTI	GGCGCC	1 cut(s)	625
PpsI	GAGTC	2 cut(s)	141, 1349
PscI	ACATGT	1 cut(s)	451
PsiI	TTATAA	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	829
Psp6I	CCWGG	3 cut(s)	378, 880, 1567
PspFI	CCCAGC	2 cut(s)	235, 704
PspGI	CCWGG	3 cut(s)	378, 880, 1567
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	623
PspPI	GGNCC	6 cut(s)	37, 258, 328, 460, 1376, 1565
PstI	CTGCAG	1 cut(s)	1012
PsuI	RGATCY	1 cut(s)	1045
PsyI	GACNNNGTC	1 cut(s)	35
RruI	TCGCGA	1 cut(s)	1510
RsaI	GTAC	5 cut(s)	152, 167, 699, 1414, 1491
RsaNI	GTAC	5 cut(s)	151, 166, 698, 1413, 1490
RseI	CAYNNNNRTG	5 cut(s)	357, 1061, 1425, 1704, 1731
SacII	CCGCGG	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	267, 959, 1401, 1628
Sau3AI	GATC	5 cut(s)	12, 52, 1045, 1366, 1594
Sau96I	GGNCC	6 cut(s)	37, 258, 328, 460, 1376, 1565
SchI	GAGTC	2 cut(s)	142, 1350
ScrFI	CCNGG	5 cut(s)	380, 882, 1050, 1569, 1850
SduI	GDGCHC	1 cut(s)	909
SfaNI	GCATC	2 cut(s)	598, 1781
SfcI	CTRYAG	1 cut(s)	1008
SfoI	GGCGCC	1 cut(s)	623
Sfr303I	CCGCGG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	1766
SgrBI	CCGCGG	1 cut(s)	49
SinI	GGWCC	3 cut(s)	37, 328, 1376
SmiMI	CAYNNNNRTG	5 cut(s)	357, 1061, 1425, 1704, 1731
SphI	GCATGC	1 cut(s)	687
Sse9I	AATT	7 cut(s)	94, 1232, 1261, 1356, 1612, 1655, 1762
SseBI	AGGCCT	1 cut(s)	1186
SspDI	GGCGCC	1 cut(s)	621
SspI	AATATT	1 cut(s)	1516
SspMI	CTAG	2 cut(s)	869, 1001
StuI	AGGCCT	1 cut(s)	1186
StyD4I	CCNGG	5 cut(s)	378, 880, 1048, 1567, 1848
StyI	CCWWGG	3 cut(s)	799, 1250, 1870
TaaI	ACNGT	6 cut(s)	691, 845, 1205, 1220, 1486, 1897
TaiI	ACGT	4 cut(s)	150, 592, 832, 1761
TaqI	TCGA	6 cut(s)	15, 24, 811, 1208, 1561, 1766
TaqII	GACCGA	3 cut(s)	79, 242, 1364
TasI	AATT	7 cut(s)	94, 1232, 1261, 1356, 1612, 1655, 1762
TatI	WGTACW	2 cut(s)	150, 1489
TfiI	GAWTC	4 cut(s)	59, 1076, 1667, 1712
Tru1I	TTAA	4 cut(s)	267, 959, 1401, 1628
Tru9I	TTAA	4 cut(s)	267, 959, 1401, 1628
TscAI	CASTG	6 cut(s)	260, 359, 369, 560, 745, 1208
TseFI	GTSAC	3 cut(s)	913, 1214, 1342
TseI	GCWGC	4 cut(s)	560, 659, 817, 1809
Tsp45I	GTSAC	3 cut(s)	913, 1214, 1342
TspDTI	ATGAA	9 cut(s)	1079, 1103, 1113, 1374, 1542, 1619, 1659, 1718, 1784
TspGWI	ACGGA	2 cut(s)	1853, 1891
TspRI	CASTG	6 cut(s)	260, 359, 369, 560, 745, 1208
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	37, 328, 1376
XapI	RAATTY	2 cut(s)	1356, 1762
XceI	RCATGY	2 cut(s)	455, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1820
XmiI	GTMKAC	1 cut(s)	586
XspI	CTAG	2 cut(s)	869, 1001
Zsp2I	ATGCAT	2 cut(s)	613, 1774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.