Rorug02G0034900

Polyamine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012410
Physical Location & Seq
Forward (+)
2773550 .. 2776521
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0034900.1

Sequence Viewer

Length: 537 bp
ATGGGTTGGTTTGGGGATACCGTGGTCAAGTCCATTCAGATCAGGCAAGCTCTCTCCCAAGCCGTCAGTCTCGGCTTGATTGTCACTTCGGCGCTGATAATATGGAAAGGGTTGATGTTGATGACTGGGAGTGAGTCACCTGTGGTGGTTGTGCTCTCTGAAAGCATGGAACCTGGCTTTGCTAGGGGTGACATTTTGTTCTTGCATATGAGCAAGGATCCTATTCGTGCAGGAGAAATTGTCGTGTTTAACGTGGATGGACGTCCTATTCCAATTGTTCATCGAGTAATTAAGGTGCACGAGCGGAGAGATACTGGAGAAGATTATGTCCTCACAAAAGGAGACAATAATTCTGATGATGATAGAATCCTTTATGCTCCGGGCCAGCGTTGGTTGCAAAAACACCATATCATGGGGAGAGCTGCTGGGTTTTTGCCTTACGTTGGTTGGGTGACAATTATCATGACAGAAAAGCCTATAATTAAGTACATTATCATAGGAGCGCTGGGATTGCTGGTCATTACGTCGAAGGATTAG

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

8.02

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S24 PF00717 35 - 104 2.7e-09 Peptidase S24-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29720
fragaria_vesca FvH4_7g01430
malus_domestica MD01G1012400.v1.1 MD02G1079400.v1.1 MD15G1206900.v1.1 MD16G1255500.v1.1
prunus_persica Prupe.7G209800_v2.0.a1
pyrus_communis pycom02g06320 pycom15g18330
rosa_chinensis RchiOBHm_Chr2g0093331
rosa_laevigata RLG00000016391
rosa_multiflora Rmu_sc0005227.1_g000004
rosa_roxburghii Rroxscaffold_2G00148180
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081000 Rh2BG082100 Rh2CG084300 Rh2DG080000
rosa_wichuraiana Rw2G006570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 1 cut(s) 304
AclWI GGATC 2 cut(s) 212, 225
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 488
AfeI AGCGCT 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 412, 443
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 50, 422
AluI AGCT 2 cut(s) 50, 422
Alw21I GWGCWC 2 cut(s) 156, 300
Alw26I GTCTC 2 cut(s) 74, 336
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 2 cut(s) 212, 225
Aor51HI AGCGCT 1 cut(s) 504
AoxI GGCC 1 cut(s) 382
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 422
AspLEI GCGC 2 cut(s) 94, 505
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 129, 200, 463
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BamHI GGATCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 156, 300
BbvI GCAGC 1 cut(s) 409
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 74, 336
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 95, 506
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 174, 381
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 2 cut(s) 171, 219
BmrFI CCNGG 2 cut(s) 174, 381
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 443
Bse1I ACTGG 2 cut(s) 130, 319
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 412, 443
BseNI ACTGG 2 cut(s) 130, 319
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 409
BseYI CCCAGC 2 cut(s) 425, 505
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 156, 300
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 412, 443
BsmAI GTCTC 2 cut(s) 74, 336
BsnI GGCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 156, 300
Bsp143I GATC 2 cut(s) 39, 217
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 384
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 171, 219
BspPI GGATC 2 cut(s) 212, 225
BsrBI CCGCTC 1 cut(s) 304
BsrI ACTGG 2 cut(s) 130, 319
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 39, 217
BssNI GRCGYC 1 cut(s) 262
BssSI CACGAG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 48, 386
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 262
BstH2I RGCGCY 2 cut(s) 95, 506
BstHHI GCGC 2 cut(s) 94, 505
BstKTI GATC 2 cut(s) 42, 220
BstMAI GTCTC 2 cut(s) 74, 336
BstMBI GATC 2 cut(s) 39, 217
BstMWI GCNNNNNNNGC 2 cut(s) 394, 511
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 172, 379
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 48, 386
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 94, 505
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 487
CviAII CATG 3 cut(s) 166, 412, 463
CviJI RGCY 7 cut(s) 50, 62, 75, 177, 384, 422, 475
CviKI_1 RGCY 7 cut(s) 50, 62, 75, 177, 384, 422, 475
CviQI GTAC 1 cut(s) 487
DpnI GATC 2 cut(s) 41, 219
DpnII GATC 2 cut(s) 39, 217
Eco47III AGCGCT 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 169, 415, 466
FatI CATG 3 cut(s) 165, 411, 462
FauNDI CATATG 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 1 cut(s) 183
GlaI GCGC 2 cut(s) 93, 504
GluI GCNGC 1 cut(s) 423
GsaI CCCAGC 2 cut(s) 429, 509
GsuI CTGGAG 1 cut(s) 336
HaeII RGCGCY 2 cut(s) 95, 506
HaeIII GGCC 1 cut(s) 384
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 94, 505
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 3 cut(s) 169, 415, 466
Hin6I GCGC 2 cut(s) 92, 503
HinP1I GCGC 2 cut(s) 92, 503
HinfI GANTC 2 cut(s) 134, 366
HpaII CCGG 1 cut(s) 380
HphI GGTGA 3 cut(s) 129, 200, 463
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 39, 160, 355
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 4 cut(s) 252, 262, 441, 524
HpyCH4V TGCA 4 cut(s) 205, 230, 298, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 511
HpySE526I ACGT 4 cut(s) 252, 262, 441, 524
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 3 cut(s) 169, 415, 466
HspAI GCGC 2 cut(s) 92, 503
Kzo9I GATC 2 cut(s) 39, 217
LmnI GCTCC 2 cut(s) 382, 500
Lsp1109I GCAGC 1 cut(s) 409
MaeI CTAG 1 cut(s) 183
MaeII ACGT 4 cut(s) 252, 262, 441, 524
MaeIII GTNAC 4 cut(s) 82, 135, 188, 451
MalI GATC 2 cut(s) 41, 219
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 39, 217
MboII GAAGA 1 cut(s) 332
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 156, 300
MluCI AATT 6 cut(s) 237, 273, 288, 349, 456, 480
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 1 cut(s) 341
MseI TTAA 3 cut(s) 249, 291, 483
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 174, 381
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 394, 511
NciI CCSGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 207
NdeII GATC 2 cut(s) 39, 217
NlaIII CATG 3 cut(s) 169, 415, 466
NlaIV GGNNCC 2 cut(s) 171, 219
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 4 cut(s) 82, 135, 188, 451
PagI TCATGA 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 2 cut(s) 425, 505
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 171, 219
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SaqAI TTAA 3 cut(s) 249, 291, 483
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 2 cut(s) 39, 217
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 174, 381
SduI GDGCHC 2 cut(s) 156, 300
SetI ASST 9 cut(s) 52, 142, 175, 255, 265, 297, 424, 444, 527
Sse9I AATT 6 cut(s) 237, 273, 288, 349, 456, 480
SsiI CCGC 1 cut(s) 304
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 172, 379
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 4 cut(s) 255, 265, 444, 527
TaqI TCGA 2 cut(s) 283, 527
TasI AATT 6 cut(s) 237, 273, 288, 349, 456, 480
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 3 cut(s) 249, 291, 483
Tru9I TTAA 3 cut(s) 249, 291, 483
TseFI GTSAC 4 cut(s) 82, 135, 188, 451
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 4 cut(s) 82, 135, 188, 451
TspDTI ATGAA 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 412
VneI GTGCAC 1 cut(s) 296
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.