Rorug02G0040400

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
3157453 .. 3159109
1657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0040400.1

Sequence Viewer

Length: 402 bp
ATGGCCACCTGGCCCTCCTCATCCGATCCTTCTAATCAGGAAGCTGTTGCAATAAGGAAGAGAAACAAGTCTGATCAAATTAAGTTCTTGATTCCTCTCATCTACGCCCCTGTTCTTCCCCTCATTCGACTCACACTGCGGAAGAATCCGGTTGTGCGGGACCGCTTGTTTACTGCTGTGTTGGTTGGAGCATTTGCTCATGGCTCTTATTTGGTGTATCCTTTTATTGATATCGAATTCCGTTATGATTGTTACTCTGGACGGATCTTTATGATATCGAGAGCAAGTAAATTTGCAGAGCATAGTTTGAGATACGAGGTAGTTTACATCTCTTCAACAACTTTGAATTGGTTTGCTGATTCTTTGCAGCTCAATGCTTCAATGGCTCCCATAGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.18

Weight (kDa)

9.43

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015894)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29780
fragaria_vesca FvH4_1g07981
malus_domestica MD15G1211600.v1.1
prunus_persica Prupe.7G205200_v2.0.a1
pyrus_communis pycom02g06720
rosa_chinensis RchiOBHm_Chr2g0094021
rosa_laevigata RLG00000016446
rosa_multiflora Rmu_co8489597.1_g000001 Rmu_ssc0000369.1_g000007
rosa_roxburghii Rroxscaffold_2G00147550
rosa_rugosa Rorug02G0040400
rosa_samantha Rh2AG087800 Rh2BG088000 Rh2CG090300 Rh2DG087000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 139, 157, 163
AclWI GGATC 2 cut(s) 20, 272
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 236, 290
AgsI TTSAA 3 cut(s) 336, 346, 381
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 2 cut(s) 44, 370
AluI AGCT 2 cut(s) 44, 370
AlwI GGATC 2 cut(s) 20, 272
AoxI GGCC 2 cut(s) 3, 11
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 236, 290
AspS9I GGNCC 2 cut(s) 12, 160
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 10
BciVI GTATCC 1 cut(s) 228
BclI TGATCA 1 cut(s) 73
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 12, 160
BmiI GGNNCC 2 cut(s) 161, 387
BmrFI CCNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 148
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 5, 13
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 2 cut(s) 5, 13
Bsp143I GATC 3 cut(s) 25, 73, 264
BspACI CCGC 3 cut(s) 139, 157, 163
BspANI GGCC 2 cut(s) 5, 13
BspLI GGNNCC 2 cut(s) 161, 387
BspPI GGATC 2 cut(s) 20, 272
BssMI GATC 3 cut(s) 25, 73, 264
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 53, 337
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 3 cut(s) 28, 76, 267
BstMBI GATC 3 cut(s) 25, 73, 264
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 5, 13
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 12, 160
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 5, 13, 44, 204, 370, 386
CviKI_1 RGCY 6 cut(s) 5, 13, 44, 204, 370, 386
DpnI GATC 3 cut(s) 27, 75, 266
DpnII GATC 3 cut(s) 25, 73, 264
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 53, 337
EarI CTCTTC 2 cut(s) 53, 337
Eco32I GATATC 2 cut(s) 232, 276
Eco47I GGWCC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 2 cut(s) 232, 276
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 201, 246, 272, 303, 392, 397
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 150
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 368
HaeIII GGCC 2 cut(s) 5, 13
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 203
HinfI GANTC 4 cut(s) 91, 129, 145, 359
HpaII CCGG 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 171, 325
Hpy188I TCNGA 2 cut(s) 25, 73
Hpy188III TCNNGA 4 cut(s) 38, 88, 258, 279
Hpy8I GTNNAC 2 cut(s) 171, 325
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 50, 296, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 3 cut(s) 25, 73, 264
LmnI GCTCC 2 cut(s) 188, 391
LpnPI CCDG 5 cut(s) 22, 23, 123, 162, 243
Lsp1109I GCAGC 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 27, 75, 266
MboI GATC 3 cut(s) 25, 73, 264
MboII GAAGA 4 cut(s) 70, 107, 154, 324
MflI RGATCY 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 78, 236, 290, 346
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 5 cut(s) 25, 28, 105, 131, 310
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 81, 400
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 3 cut(s) 25, 73, 264
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 161, 387
PfeI GAWTC 3 cut(s) 91, 145, 359
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 161, 387
PspPI GGNCC 2 cut(s) 12, 160
PsuI RGATCY 1 cut(s) 264
SaqAI TTAA 2 cut(s) 81, 400
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 3 cut(s) 25, 73, 264
Sau96I GGNCC 2 cut(s) 12, 160
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 10
SetI ASST 4 cut(s) 11, 46, 321, 372
SinI GGWCC 1 cut(s) 160
Sse9I AATT 4 cut(s) 78, 236, 290, 346
SsiI CCGC 3 cut(s) 139, 157, 163
StyD4I CCNGG 1 cut(s) 8
TaqI TCGA 3 cut(s) 127, 234, 278
TasI AATT 4 cut(s) 78, 236, 290, 346
TfiI GAWTC 3 cut(s) 91, 145, 359
Tru1I TTAA 2 cut(s) 81, 400
Tru9I TTAA 2 cut(s) 81, 400
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 367
TspGWI ACGGA 2 cut(s) 230, 277
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 2 cut(s) 236, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.