Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009041

Physical Location & Seq

Genomic Coordinates Forward (+)

3306409 .. 3328468

Gene Structure 22060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGATCGAGATTGGGCAAATTTGCCAAAGCATCTTTTGGATTCAGTTGTAGAGACATTAGTGTTACCAACACACTATGTGCGGTTTAGCCTTGTTTGTAAGTCATGGTATTCAGTAGCAAAGGATAACAAAAACAAACATGTTAGGATGACAGCTCCAATGTTGTTGATTTACAGCGGCAAAAAAGACTATTGGAATTTGTACAACATTGATAGTAATAAGGTCCTTGATTTGCAAGTAAGAGTGCCGAATAAGCGGCTTTGTGGGTCTTCAAAAGGGTGGTTAATATTTGTTGACAGGAATGATGTGGACAAGAATTTTGGAGTAACCCTTGTAAATCCATTCTTTAGGGTTAAAGGAAGGAGAGAGAAAGCAAACTCTTTCATTCGCCTACCTCCACTTATGCCTCCAGGTTGGGAAAAATGGTTTAAACGGTGTGAAGAATACGTGTTCAAGGCTACAATTTCAGCTGATCCAATATTAAATCCAGAAGATTGCATTGTTATGGTCATACATTTGGAAAGATTGCAGTTGGCTTTTATTAGACTAGGTAAAGACACAACATGGACGTATATGGATGAAAGGGAGAGTATTGTTCTAGGGTGCCAGATGATTGAAGAAGTTATCAAGATTGAAGATACATTTCATGCTGTGAGTTACTCGAATAAACTTTATACTTTTGACGTTAATTCTCAGTCGTATTCAAACGTACAATTGGTTGTACCTGAAAATAAACCAATTAGGTTAATCAAGAGATATATATTTGAAGGGGAAGGGAAAAGTTTGTTGATGGTTCACAGATACATGGAATATGAAGGTGATGATTACAAACGGGTGACGAAGAAATTTAGAGTATTTGAATTGAATTCACATAAGGGTGAGTGGGTTGAGAAAAGCTCATTGGGTGATATTGCGCTTTTTGTAGGAGATAACTCTTCGATCTATATCTGTGTTGCCTTCAAATATTTCAGGATGTCAATCGAATTGCATATATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008080 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046027 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 map00561

Pfam Domains

Protein Families

LCAT

Protein Analysis

332

Amino Acids

39.06

Weight (kDa)

8.91

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 46	2.7e-06	F-box domain
Beta-prop_KIB1-4	PF03478	67 - 316	8.1e-37	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13640 AT5G13640 AT5G13640
fragaria_vesca	FvH4_1g08180 FvH4_1g08180 FvH4_1g08180 FvH4_1g08180 FvH4_1g08180
malus_domestica	MD02G1086400.v1.1 MD15G1213500.v1.1
prunus_persica	Prupe.7G203400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0094251
rosa_laevigata	RLG00000016471
rosa_multiflora	Rmu_co8505711.1_g000001 Rmu_sc0002193.1_g000017 Rmu_sc0006198.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147320
rosa_rugosa	Rorug02G0042500
rosa_samantha	Rh2AG090100 Rh2BG090100 Rh2CG092600 Rh2DG089000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	3 cut(s)	82, 177, 256
AclWI	GGATC	2 cut(s)	12, 467
AcsI	RAATTY	5 cut(s)	19, 196, 316, 845, 865
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	3 cut(s)	203, 711, 723
AflIII	ACRYGT	2 cut(s)	139, 447
AgsI	TTSAA	9 cut(s)	273, 454, 617, 635, 705, 767, 860, 865, 961
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	884, 916
AluBI	AGCT	3 cut(s)	155, 470, 897
AluI	AGCT	3 cut(s)	155, 470, 897
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	12, 467
ApoI	RAATTY	5 cut(s)	19, 196, 316, 845, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	4 cut(s)	830, 847, 890, 917
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	261
BccI	CCATC	1 cut(s)	784
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	548, 599
BisI	GCNGC	2 cut(s)	178, 257
BlsI	GCNGC	2 cut(s)	179, 258
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	411
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	2 cut(s)	944, 977
Bse8I	GATNNNNATC	2 cut(s)	944, 977
BseBI	CCWGG	1 cut(s)	411
BseGI	GGATG	3 cut(s)	153, 583, 978
BseJI	GATNNNNATC	2 cut(s)	944, 977
BseMII	CTCAG	1 cut(s)	707
BshNI	GGYRCC	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	4, 472, 939
BspACI	CCGC	3 cut(s)	82, 177, 256
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	12, 467
BspT107I	GGYRCC	1 cut(s)	603
BsrGI	TGTACA	1 cut(s)	201
BssMI	GATC	3 cut(s)	4, 472, 939
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	435
Bst6I	CTCTTC	1 cut(s)	940
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	693
BstF5I	GGATG	3 cut(s)	153, 583, 978
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	3 cut(s)	7, 475, 942
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	3 cut(s)	4, 472, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	153, 583, 978
CfoI	GCGC	1 cut(s)	916
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	202, 710, 722
CviAII	CATG	5 cut(s)	105, 140, 564, 647, 805
CviJI	RGCY	7 cut(s)	90, 155, 259, 458, 470, 536, 897
CviKI_1	RGCY	7 cut(s)	90, 155, 259, 458, 470, 536, 897
CviQI	GTAC	3 cut(s)	202, 710, 722
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	3 cut(s)	6, 474, 941
DpnII	GATC	3 cut(s)	4, 472, 939
DraI	TTTAAA	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	940
EarI	CTCTTC	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	409
FaeI	CATG	5 cut(s)	108, 143, 567, 650, 808
FatI	CATG	5 cut(s)	104, 139, 563, 646, 804
Fnu4HI	GCNGC	2 cut(s)	178, 257
FokI	GGATG	3 cut(s)	160, 590, 985
Fsp4HI	GCNGC	2 cut(s)	178, 257
FspBI	CTAG	2 cut(s)	548, 599
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	2 cut(s)	178, 257
GsuI	CTGGAG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	5 cut(s)	108, 143, 567, 650, 808
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	4 cut(s)	830, 847, 890, 917
Hpy166II	GTNNAC	3 cut(s)	295, 310, 796
Hpy188III	TCNNGA	5 cut(s)	8, 488, 628, 751, 970
Hpy8I	GTNNAC	3 cut(s)	295, 310, 796
HpyAV	CCTTC	5 cut(s)	354, 761, 767, 809, 967
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	4 cut(s)	447, 569, 684, 708
HpyCH4V	TGCA	4 cut(s)	235, 498, 529, 988
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	4 cut(s)	447, 569, 684, 708
Hsp92II	CATG	5 cut(s)	108, 143, 567, 650, 808
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	3 cut(s)	4, 472, 939
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	283, 396, 423, 501, 620, 738, 955
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	548, 599
MaeII	ACGT	4 cut(s)	447, 569, 684, 708
MaeIII	GTNAC	4 cut(s)	63, 325, 656, 835
MalI	GATC	3 cut(s)	6, 474, 941
MboI	GATC	3 cut(s)	4, 472, 939
MboII	GAAGA	7 cut(s)	261, 452, 503, 629, 647, 853, 927
MfeI	CAATTG	1 cut(s)	713
MnlI	CCTC	2 cut(s)	405, 417
MseI	TTAA	7 cut(s)	284, 354, 429, 482, 687, 746, 997
MslI	CAYNNNNRTG	2 cut(s)	503, 876
MspA1I	CMGCKG	2 cut(s)	177, 470
MspR9I	CCNGG	1 cut(s)	411
MssI	GTTTAAAC	1 cut(s)	430
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	3 cut(s)	4, 472, 939
NlaIII	CATG	5 cut(s)	108, 143, 567, 650, 808
NlaIV	GGNNCC	1 cut(s)	605
NmuCI	GTSAC	1 cut(s)	835
NspI	RCATGY	1 cut(s)	143
PciI	ACATGT	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	179, 258
PmeI	GTTTAAAC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	223
PscI	ACATGT	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	1 cut(s)	223
PspPPI	RGGWCCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	203, 711, 723
RsaNI	GTAC	3 cut(s)	202, 710, 722
RseI	CAYNNNNRTG	2 cut(s)	503, 876
SaqAI	TTAA	7 cut(s)	284, 354, 429, 482, 687, 746, 997
SatI	GCNGC	2 cut(s)	178, 257
Sau3AI	GATC	3 cut(s)	4, 472, 939
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	503, 876
SsiI	CCGC	3 cut(s)	82, 177, 256
SspI	AATATT	3 cut(s)	288, 480, 965
SspMI	CTAG	2 cut(s)	548, 599
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	4 cut(s)	450, 572, 687, 711
TaqI	TCGA	4 cut(s)	7, 662, 938, 981
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	180, 259
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	7 cut(s)	284, 354, 429, 482, 687, 746, 997
Tru9I	TTAA	7 cut(s)	284, 354, 429, 482, 687, 746, 997
TseFI	GTSAC	1 cut(s)	835
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	4 cut(s)	373, 594, 635, 828
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	5 cut(s)	19, 196, 316, 845, 865
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	2 cut(s)	548, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.