Rorug02G0171900

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014966
Physical Location & Seq
Reverse (-)
15634282 .. 15636077
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0171900.1

Sequence Viewer

Length: 327 bp
ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCGGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCATCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAGGGCCTTTCTGCCGCTTTGTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCGTTAAACGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

10.01

Isoelectric Point (pI)

64.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014966)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65470
fragaria_vesca FvH4_1g19680 FvH4_1g19680
malus_domestica MD01G1039200.v1.1 MD15G1312400.v1.1
prunus_persica Prupe.6G201400_v2.0.a1 Prupe.6G201400_v2.0.a1
pyrus_communis pycom01g06690
rosa_chinensis RchiOBHm_Chr2g0111231
rosa_laevigata RLG00000017876
rosa_multiflora Rmu_sc0003055.1_g000005
rosa_roxburghii Rroxscaffold_2G00132600
rosa_rugosa Rorug02G0171900 Rorug02G0171900
rosa_samantha Rh2AG225000
rosa_wichuraiana Rw2G017370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 257, 320
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 2 cut(s) 86, 301
AluI AGCT 2 cut(s) 86, 301
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 2 cut(s) 257, 320
AoxI GGCC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 119, 136
AvaII GGWCC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 168
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 119, 136
BmiI GGNNCC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 57
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 53, 207
BseYI CCCAGC 2 cut(s) 245, 288
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 157, 249, 312
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 257, 320
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssMI GATC 3 cut(s) 157, 249, 312
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 3 cut(s) 160, 252, 315
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 157, 249, 312
BstMWI GCNNNNNNNGC 2 cut(s) 242, 285
BstNSI RCATGY 1 cut(s) 216
BstUI CGCG 1 cut(s) 279
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 119, 136
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 55
CviAII CATG 1 cut(s) 213
CviJI RGCY 7 cut(s) 13, 61, 86, 138, 261, 293, 301
CviKI_1 RGCY 7 cut(s) 13, 61, 86, 138, 261, 293, 301
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 132
DpnI GATC 3 cut(s) 159, 251, 314
DpnII GATC 3 cut(s) 157, 249, 312
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 2 cut(s) 119, 136
FaeI CATG 1 cut(s) 216
FaiI YATR 3 cut(s) 173, 214, 264
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 147
GsaI CCCAGC 2 cut(s) 249, 292
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 58
HgaI GACGC 1 cut(s) 285
Hin1II CATG 1 cut(s) 216
HindIII AAGCTT 2 cut(s) 84, 299
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 10, 79, 157
Hpy188III TCNNGA 2 cut(s) 19, 307
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 285
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 216
Kzo9I GATC 3 cut(s) 157, 249, 312
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 8 cut(s) 29, 71, 193, 198, 218, 231, 274, 281
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 159, 251, 314
MboI GATC 3 cut(s) 157, 249, 312
MboII GAAGA 4 cut(s) 90, 93, 96, 99
MfeI CAATTG 1 cut(s) 231
MluCI AATT 1 cut(s) 231
MluI ACGCGT 1 cut(s) 277
MnlI CCTC 5 cut(s) 74, 127, 132, 185, 303
MseI TTAA 1 cut(s) 282
MspI CCGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 231
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 242, 285
NdeII GATC 3 cut(s) 157, 249, 312
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 1 cut(s) 216
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
PspFI CCCAGC 2 cut(s) 245, 288
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 119, 136
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 3 cut(s) 157, 249, 312
Sau96I GGNCC 2 cut(s) 119, 136
SetI ASST 5 cut(s) 36, 88, 121, 187, 303
SinI GGWCC 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 147
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 119
XagI CCTNNNNNAGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.