Rorug02G0253600

L-galactono-1,4-lactone dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
26580981 .. 26581453
473 bp
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UTR
Exon/CDS
Intron
Rorug02G0253600.1

Sequence Viewer

Length: 255 bp
ATGTCTCACATACCAACTTACACTATGAGATTCTCAAAACTCGTTCTCATCTTTCTGGGTTTATCCTCTTGTTTGGTATTAGAACTTGTTCATGGCGGGAAAGTGGACTCCAATGAACTTGGGGTGATGAGCTCTATCAACTCTTTCAGGGCTGAAAGAGCTGGGTGTAGAAAGAAGGTTGCTGACTGCAAAGAAGGGTCAAAAGAGAATGTTCTTGAGGATGAGGACTACATCTACACCAACTCTCTCCCTTAA

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

6.07

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013114)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AluBI AGCT 2 cut(s) 132, 161
AluI AGCT 2 cut(s) 132, 161
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 236
BseGI GGATG 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 134
BspACI CCGC 1 cut(s) 96
BstF5I GGATG 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 226
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 132, 152, 161
CviKI_1 RGCY 3 cut(s) 132, 152, 161
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 1 cut(s) 95
FaiI YATR 3 cut(s) 11, 26, 93
FatI CATG 1 cut(s) 91
FauI CCCGC 1 cut(s) 89
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 95
HinfI GANTC 2 cut(s) 30, 107
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 169, 188
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 95
LpnPI CCDG 3 cut(s) 41, 133, 147
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 3 cut(s) 76, 211, 217
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 30
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 161
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 253
SchI GAGTC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 134
SetI ASST 3 cut(s) 134, 163, 180
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 80, 129
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.