Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013114

Physical Location & Seq

Genomic Coordinates Reverse (-)

43723887 .. 43730715

Gene Structure 6829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGCAGAGAGCTCTCACTGTGAAGCGCTCGCTCCAATCCCTCCACAGAATCGCCAATTCCACCACTAAAAACCCATTAAGCTCAGGGCGTGCATTTTGCAATGCACCGTCACCGTCACCGTCACCGGCACCGTCGGCGTCCTCCGCATCCGCATCCGCATCAGCATCAGAGGTCCGCAAGTACATGGGGTACACAGCCCTGGTCTTATTCTGCGGTGCCGCCACCTACTACTCCTTCCCATTTCCCGAGAACGCCAAGCACAAGAAGGCCCAAATCTTCCGGTACGCCCCTCTACCTGAGGAGCTCCACACGGTCTCAAACTGGAGCGGGACCCACGAGGTCCAGACCCGGGTTTTCCACCAGCCCGAGACCCTCGAGGAGCTGGAGAGAGTAGTCAAGGAGGCGAATGAGAACAAGTACCGGATTCGGCCGGTCGGCTCTGGGTTGTCCCCCAATGGGATTGGATTGTCCAGGGCCGGGATGGTCAATTTGGCGCTGATGGATAAGGTTTTGGAGGTGGATAAGGAGAAGAAGAGAGTGAGAGTGCAAGCTGGGATCAGGGTCCAGCAATTGGTGGATGGGATTAAGGATCAGGGCCTTACTTTGCAGAACTTTGCCTCCATAAGGGAGCAACAGATTGGTGGCATTGTGCAGGTTGGTGCACATGGTACTGGTGCGAGGTTGCCTCCGATTGATGAGCAGGTGATCAGCATGAAATTGGTCACTCCTGCTAAGGGAACAATAGAGGTCTCCAAGGAGAAAGATCCAGAGCTGTTTTATTTAGCTCGCTGTGGCCTCGGCGGCCTGGGAGTTGTTGCTGAAGTTACCATCCAATGTGTTGACAGACAGGAGCTTGTAGAGCACACTACTGTTTCAAACATGGAAGAAATCAAGAAAAATCACAAGAAATTGCTCTCTGAGAACAAACATGTGAAGTATCTCTATATTCCATATACTGATACTGTTGTGGTTGTGACGTGCAACCCTGTCTCGAAATGGAAAGGTCCCCCAAAGTTCAAACCCAAATATACAACGGATGAAGCCATTCAGCACGTTCGTGATCTCTACAGGGAATGCCTCAAGAAGTACAGAGTAGTACCAGACAACAGTGTAGACATAAATGAGCTATCTTTTACAGAGTTGAGAGATAAACTACTGGCCCTAAATCCTCTCAACAAAGATCATATCGTGAAAGTGAATCAAGCTGAGGCAGAGTTCTGGAGGAAGTCAGAGGGATACAGAGTAGGATGGAGTGATGAAATTCTGGGCTTTGATTGTGGTGGCCAACAGTGGGTTTCGGAGACTTGTTTTCCAGCTGGAACCCTTGCCAAACCAAGTATGAAAGACCTTGAATACATAGCAGATCTAAAACAGCTAATAGAGAAAGAAGAGATACCTGCACCTGCTCCAATAGAGCAGCGCTGGACAGCCAGCACTAAGAGCCCCATGAGTCCAGCTTCAAGCTCAAGAGAGGATGATATATTTTCATGGGTTGGCATAATCATGTACCTTCCAACAACAGATGCCCGCCAAAGAAAGGATATTACGGAAGAGTTTTTCCACTACAGGCATCTAACCCAGACACGGTTGTGGGATACGTATTCTTCTTATGAACACTGGGCCAAGATTGAGGTCCCAAAGGACAAAGAACAGCTTACCGCTCTGCAGGCAAGGCTAAGGAAGCGTTTTCCAGTTGAAGCCTACAACAAAGCACGAACGGAATTAGACCCAAACCGGATCCTTTCAAACATCAAGCTGGAAAAGCTTTTCCCATTGGCTGATACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0008152 GO:0009536 GO:0016491 GO:0016627 GO:0016632 GO:0016633 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0080049

KEGG Pathways

Metabolic & Signaling

ko00053 ko01100 ko01110 map00053 map01100 map01110

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

596

Amino Acids

67.3

Weight (kDa)

8.87

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	118 - 248	1.5e-28	FAD binding domain
ALO	PF04030	275 - 586	4.4e-19	D-arabinono-1,4-lactone oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47930 AT3G47930
fragaria_vesca	FvH4_6g25110
malus_domestica	MD00G1048800.v1.1 MD00G1074000.v1.1
prunus_persica	Prupe.7G046300_v2.0.a1 Prupe.7G046300_v2.0.a1
pyrus_communis	pycom14g07300
rosa_chinensis	RchiOBHm_Chr2g0124941
rosa_laevigata	RLG00000018835
rosa_multiflora	Rmu_sc0008068.1_g000007
rosa_roxburghii	Rroxscaffold_2G00118570 Rroxscaffold_2G00118860
rosa_rugosa	Rorug02G0253600
rosa_samantha	Rh2AG313000 Rh2CG302400 Rh2DG338500
rosa_wichuraiana	Rw2G025280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	691, 1411
AbsI	CCTCGAGG	1 cut(s)	374
Acc36I	ACCTGC	4 cut(s)	643, 691, 1405, 1411
AccB1I	GGYRCC	2 cut(s)	127, 215
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccBSI	CCGCTC	2 cut(s)	327, 1661
AccI	GTMKAC	1 cut(s)	1113
AclWI	GGATC	5 cut(s)	563, 597, 758, 1732, 1745
AcoI	YGGCCR	2 cut(s)	428, 1282
AcsI	RAATTY	1 cut(s)	1260
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	8 cut(s)	182, 191, 284, 419, 670, 1088, 1098, 1508
AfeI	AGCGCT	2 cut(s)	26, 1421
AfiI	CCNNNNNNNGG	9 cut(s)	349, 456, 477, 571, 624, 734, 1291, 1537, 1584
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	6 cut(s)	876, 1018, 1352, 1461, 1697, 1746
AjiI	CACGTC	1 cut(s)	978
AjnI	CCWGG	3 cut(s)	198, 470, 804
AleI	CACNNNNGTG	2 cut(s)	1056, 1588
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
Alw21I	GWGCWC	4 cut(s)	13, 306, 664, 864
Alw26I	GTCTC	5 cut(s)	319, 362, 754, 994, 1295
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	5 cut(s)	563, 597, 758, 1732, 1745
Ama87I	CYCGRG	4 cut(s)	245, 348, 365, 374
Aor51HI	AGCGCT	2 cut(s)	26, 1421
AoxI	GGCC	9 cut(s)	267, 428, 474, 595, 793, 802, 1158, 1282, 1620
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	1 cut(s)	1417
ApoI	RAATTY	1 cut(s)	1260
Asp700I	GAANNNNTTC	1 cut(s)	1044
AspLEI	GCGC	3 cut(s)	27, 496, 1422
AsuC2I	CCSGG	3 cut(s)	349, 350, 478
AsuHPI	GGTGA	4 cut(s)	102, 108, 114, 715
AvaI	CYCGRG	4 cut(s)	245, 348, 365, 374
AvaII	GGWCC	6 cut(s)	172, 330, 340, 562, 1004, 1633
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	664
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BalI	TGGCCA	1 cut(s)	1284
BamHI	GGATCC	1 cut(s)	1737
BanI	GGYRCC	2 cut(s)	127, 215
BanII	GRGCYC	3 cut(s)	13, 306, 1445
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	4 cut(s)	13, 306, 664, 864
BbvCI	CCTCAGC	1 cut(s)	1206
BbvI	GCAGC	1 cut(s)	1429
BccI	CCATC	5 cut(s)	475, 493, 572, 836, 1242
BciT130I	CCWGG	3 cut(s)	200, 472, 806
BciVI	GTATCC	2 cut(s)	1229, 1588
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	3 cut(s)	349, 350, 478
BcoDI	GTCTC	5 cut(s)	319, 362, 754, 994, 1295
BfmI	CTRYAG	3 cut(s)	1066, 1564, 1664
BfoI	RGCGCY	3 cut(s)	28, 497, 1423
BfuAI	ACCTGC	4 cut(s)	643, 691, 1405, 1411
BfuI	GTATCC	2 cut(s)	1229, 1588
BglI	GCCNNNNNGGC	1 cut(s)	801
BglII	AGATCT	1 cut(s)	1363
BisI	GCNGC	3 cut(s)	219, 802, 1418
BlsI	GCNGC	3 cut(s)	220, 803, 1419
Bme1390I	CCNGG	6 cut(s)	200, 349, 350, 472, 478, 806
Bme18I	GGWCC	6 cut(s)	172, 330, 340, 562, 1004, 1633
BmeT110I	CYCGRG	4 cut(s)	245, 348, 365, 374
BmgBI	CACGTC	1 cut(s)	978
BmiI	GGNNCC	9 cut(s)	129, 217, 331, 332, 563, 1006, 1321, 1635, 1739
BmrFI	CCNGG	6 cut(s)	200, 349, 350, 472, 478, 806
BmrI	ACTGGG	1 cut(s)	1627
BmsI	GCATC	6 cut(s)	155, 161, 167, 173, 1513, 1579
BmuI	ACTGGG	1 cut(s)	1627
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	3 cut(s)	343, 404, 1240
Bpu10I	CCTNAGC	4 cut(s)	82, 732, 1206, 1676
BpuEI	CTTGAG	2 cut(s)	1064, 1450
BpuMI	CCSGG	3 cut(s)	349, 350, 478
BsaAI	YACGTR	1 cut(s)	1599
BsaHI	GRCGYC	1 cut(s)	137
BsaI	GGTCTC	3 cut(s)	319, 362, 754
BsaJI	CCNNGG	6 cut(s)	198, 348, 471, 753, 796, 805
BsaWI	WCCGGW	3 cut(s)	279, 420, 1734
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	9 cut(s)	349, 456, 477, 571, 624, 734, 1291, 1537, 1584
Bse118I	RCCGGY	2 cut(s)	124, 430
Bse1I	ACTGG	5 cut(s)	326, 676, 1161, 1622, 1691
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	3 cut(s)	200, 472, 806
BseDI	CCNNGG	6 cut(s)	198, 348, 471, 753, 796, 805
BseGI	GGATG	8 cut(s)	146, 152, 486, 583, 828, 1042, 1253, 1480
BseLI	CCNNNNNNNGG	9 cut(s)	349, 456, 477, 571, 624, 734, 1291, 1537, 1584
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	4 cut(s)	96, 288, 909, 1197
BseNI	ACTGG	5 cut(s)	326, 676, 1161, 1622, 1691
BseRI	GAGGAG	2 cut(s)	314, 392
BseSI	GKGCMC	1 cut(s)	664
BseX3I	CGGCCG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	1429
BseYI	CCCAGC	1 cut(s)	551
BsgI	GTGCAG	2 cut(s)	671, 1383
Bsh1285I	CGRYCG	2 cut(s)	431, 435
BshFI	GGCC	9 cut(s)	269, 430, 476, 597, 795, 804, 1160, 1284, 1622
BshNI	GGYRCC	2 cut(s)	127, 215
BsiEI	CGRYCG	2 cut(s)	431, 435
BsiHKAI	GWGCWC	4 cut(s)	13, 306, 664, 864
BsiHKCI	CYCGRG	4 cut(s)	245, 348, 365, 374
BsiSI	CCGG	7 cut(s)	125, 280, 349, 421, 431, 477, 1735
BslFI	GGGAC	4 cut(s)	343, 433, 990, 1619
BslI	CCNNNNNNNGG	9 cut(s)	349, 456, 477, 571, 624, 734, 1291, 1537, 1584
BsmAI	GTCTC	5 cut(s)	319, 362, 754, 994, 1295
BsmFI	GGGAC	4 cut(s)	343, 433, 990, 1619
BsmI	GAATGC	1 cut(s)	1079
BsnI	GGCC	9 cut(s)	269, 430, 476, 597, 795, 804, 1160, 1284, 1622
Bso31I	GGTCTC	3 cut(s)	319, 362, 754
BsoBI	CYCGRG	4 cut(s)	245, 348, 365, 374
Bsp1286I	GDGCHC	5 cut(s)	13, 306, 664, 864, 1445
Bsp143I	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
BspANI	GGCC	9 cut(s)	269, 430, 476, 597, 795, 804, 1160, 1284, 1622
BspCNI	CTCAG	4 cut(s)	95, 289, 910, 1198
BspLI	GGNNCC	9 cut(s)	129, 217, 331, 332, 563, 1006, 1321, 1635, 1739
BspMAI	CTGCAG	1 cut(s)	1668
BspMI	ACCTGC	4 cut(s)	643, 691, 1405, 1411
BspPI	GGATC	5 cut(s)	563, 597, 758, 1732, 1745
BspT107I	GGYRCC	2 cut(s)	127, 215
BspTNI	GGTCTC	3 cut(s)	319, 362, 754
BsrBI	CCGCTC	2 cut(s)	327, 1661
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	2 cut(s)	124, 430
BsrI	ACTGG	5 cut(s)	326, 676, 1161, 1622, 1691
BssAI	RCCGGY	2 cut(s)	124, 430
BssECI	CCNNGG	6 cut(s)	198, 348, 471, 753, 796, 805
BssMI	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
BssNI	GRCGYC	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	753
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	200, 472, 806
Bst6I	CTCTTC	3 cut(s)	527, 1383, 1545
BstACI	GRCGYC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	1599
BstC8I	GCNNGC	7 cut(s)	29, 90, 549, 787, 1432, 1528, 1668
BstDEI	CTNAG	7 cut(s)	82, 297, 732, 918, 1206, 1437, 1676
BstENI	CCTNNNNNAGG	1 cut(s)	622
BstF5I	GGATG	8 cut(s)	146, 152, 486, 583, 828, 1042, 1253, 1480
BstH2I	RGCGCY	3 cut(s)	28, 497, 1423
BstHHI	GCGC	3 cut(s)	27, 496, 1422
BstKTI	GATC	8 cut(s)	558, 592, 708, 766, 1063, 1183, 1366, 1740
BstMAI	GTCTC	5 cut(s)	319, 362, 754, 994, 1295
BstMBI	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
BstMCI	CGRYCG	2 cut(s)	431, 435
BstMWI	GCNNNNNNNGC	9 cut(s)	134, 143, 801, 859, 1440, 1667, 1672, 1681, 1762
BstNI	CCWGG	3 cut(s)	200, 472, 806
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	6 cut(s)	198, 347, 348, 470, 476, 804
BstSFI	CTRYAG	3 cut(s)	1066, 1564, 1664
BstSLI	GKGCMC	1 cut(s)	664
BstSNI	TACGTA	1 cut(s)	1599
BstV1I	GCAGC	1 cut(s)	1429
BstX2I	RGATCY	3 cut(s)	763, 1363, 1737
BstYI	RGATCY	3 cut(s)	763, 1363, 1737
BstZI	CGGCCG	1 cut(s)	428
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	2 cut(s)	1229, 1588
BsuRI	GGCC	9 cut(s)	269, 430, 476, 597, 795, 804, 1160, 1284, 1622
BtrI	CACGTC	1 cut(s)	978
BtsCI	GGATG	8 cut(s)	146, 152, 486, 583, 828, 1042, 1253, 1480
BtsIMutI	CAGTG	4 cut(s)	15, 1114, 1295, 1615
BveI	ACCTGC	4 cut(s)	643, 691, 1405, 1411
Cac8I	GCNNGC	7 cut(s)	29, 90, 549, 787, 1432, 1528, 1668
CfoI	GCGC	3 cut(s)	27, 496, 1422
Cfr10I	RCCGGY	2 cut(s)	124, 430
Cfr9I	CCCGGG	1 cut(s)	348
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	8 cut(s)	181, 190, 283, 418, 669, 1087, 1097, 1507
CviAII	CATG	8 cut(s)	184, 665, 712, 880, 929, 1447, 1488, 1504
CviQI	GTAC	8 cut(s)	181, 190, 283, 418, 669, 1087, 1097, 1507
DdeI	CTNAG	7 cut(s)	82, 297, 732, 918, 1206, 1437, 1676
DpnI	GATC	8 cut(s)	557, 591, 707, 765, 1062, 1182, 1365, 1739
DpnII	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
EaeI	YGGCCR	2 cut(s)	428, 1282
EagI	CGGCCG	1 cut(s)	428
Eam1104I	CTCTTC	3 cut(s)	527, 1383, 1545
EarI	CTCTTC	3 cut(s)	527, 1383, 1545
Ecl136II	GAGCTC	2 cut(s)	11, 304
EclXI	CGGCCG	1 cut(s)	428
Eco105I	TACGTA	1 cut(s)	1599
Eco130I	CCWWGG	1 cut(s)	753
Eco24I	GRGCYC	3 cut(s)	13, 306, 1445
Eco31I	GGTCTC	3 cut(s)	319, 362, 754
Eco47I	GGWCC	6 cut(s)	172, 330, 340, 562, 1004, 1633
Eco47III	AGCGCT	2 cut(s)	26, 1421
Eco52I	CGGCCG	1 cut(s)	428
Eco53kI	GAGCTC	2 cut(s)	11, 304
Eco57I	CTGAAG	1 cut(s)	840
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	4 cut(s)	245, 348, 365, 374
EcoICRI	GAGCTC	2 cut(s)	11, 304
EcoNI	CCTNNNNNAGG	1 cut(s)	622
EcoO109I	RGGNCCY	4 cut(s)	330, 595, 1004, 1633
EcoRII	CCWGG	3 cut(s)	198, 470, 804
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	3 cut(s)	13, 306, 1445
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	8 cut(s)	187, 668, 715, 883, 932, 1450, 1491, 1507
FalI	AAGNNNNNCTT	2 cut(s)	1638, 1670
FaqI	GGGAC	4 cut(s)	343, 433, 990, 1619
FatI	CATG	8 cut(s)	183, 664, 711, 879, 928, 1446, 1487, 1503
FauI	CCCGC	2 cut(s)	320, 1535
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	3 cut(s)	219, 802, 1418
FokI	GGATG	8 cut(s)	133, 139, 493, 590, 815, 1049, 1260, 1487
FriOI	GRGCYC	3 cut(s)	13, 306, 1445
Fsp4HI	GCNGC	3 cut(s)	219, 802, 1418
GlaI	GCGC	3 cut(s)	26, 495, 1421
GluI	GCNGC	3 cut(s)	219, 802, 1418
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	3 cut(s)	343, 404, 1240
HaeII	RGCGCY	3 cut(s)	28, 497, 1423
HaeIII	GGCC	9 cut(s)	269, 430, 476, 597, 795, 804, 1160, 1284, 1622
HapII	CCGG	7 cut(s)	125, 280, 349, 421, 431, 477, 1735
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	3 cut(s)	27, 496, 1422
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	8 cut(s)	187, 668, 715, 883, 932, 1450, 1491, 1507
Hin6I	GCGC	3 cut(s)	25, 494, 1420
HinP1I	GCGC	3 cut(s)	25, 494, 1420
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HindIII	AAGCTT	1 cut(s)	1763
HinfI	GANTC	4 cut(s)	48, 424, 1198, 1450
HpaII	CCGG	7 cut(s)	125, 280, 349, 421, 431, 477, 1735
HphI	GGTGA	4 cut(s)	102, 108, 114, 715
Hpy166II	GTNNAC	4 cut(s)	192, 662, 841, 1114
Hpy188I	TCNGA	5 cut(s)	169, 690, 919, 1231, 1300
Hpy8I	GTNNAC	4 cut(s)	192, 662, 841, 1114
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	244, 259, 1520
HpyCH4IV	ACGT	3 cut(s)	977, 1053, 1598
HpyF10VI	GCNNNNNNNGC	9 cut(s)	134, 143, 801, 859, 1440, 1667, 1672, 1681, 1762
HpyF3I	CTNAG	7 cut(s)	82, 297, 732, 918, 1206, 1437, 1676
HpySE526I	ACGT	3 cut(s)	977, 1053, 1598
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	8 cut(s)	187, 668, 715, 883, 932, 1450, 1491, 1507
HspAI	GCGC	3 cut(s)	25, 494, 1420
KflI	GGGWCCC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
LmnI	GCTCC	8 cut(s)	36, 301, 309, 324, 379, 628, 850, 1411
Lsp1109I	GCAGC	1 cut(s)	1429
LweI	GCATC	6 cut(s)	155, 161, 167, 173, 1513, 1579
MaeII	ACGT	3 cut(s)	977, 1053, 1598
MaeIII	GTNAC	6 cut(s)	108, 114, 120, 721, 823, 973
MalI	GATC	8 cut(s)	557, 591, 707, 765, 1062, 1182, 1365, 1739
MbiI	CCGCTC	2 cut(s)	327, 1661
MboI	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
MboII	GAAGA	7 cut(s)	268, 541, 544, 896, 1400, 1562, 1596
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	3 cut(s)	763, 1363, 1737
MhlI	GDGCHC	5 cut(s)	13, 306, 664, 864, 1445
MlsI	TGGCCA	1 cut(s)	1284
MluCI	AATT	7 cut(s)	55, 487, 569, 716, 908, 1260, 1721
MluNI	TGGCCA	1 cut(s)	1284
MlyI	GAGTC	1 cut(s)	1459
MmeI	TCCRAC	1 cut(s)	1538
Mox20I	TGGCCA	1 cut(s)	1284
MroXI	GAANNNNTTC	1 cut(s)	1044
MscI	TGGCCA	1 cut(s)	1284
MseI	TTAA	2 cut(s)	77, 585
MslI	CAYNNNNRTG	3 cut(s)	1056, 1502, 1588
Msp20I	TGGCCA	1 cut(s)	1284
MspA1I	CMGCKG	1 cut(s)	1316
MspI	CCGG	7 cut(s)	125, 280, 349, 421, 431, 477, 1735
MspR9I	CCNGG	6 cut(s)	200, 349, 350, 472, 478, 806
MunI	CAATTG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	1079
MvaI	CCWGG	3 cut(s)	200, 472, 806
MwoI	GCNNNNNNNGC	9 cut(s)	134, 143, 801, 859, 1440, 1667, 1672, 1681, 1762
NciI	CCSGG	3 cut(s)	349, 350, 478
NdeII	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
NlaIII	CATG	8 cut(s)	187, 668, 715, 883, 932, 1450, 1491, 1507
NlaIV	GGNNCC	9 cut(s)	129, 217, 331, 332, 563, 1006, 1321, 1635, 1739
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	5 cut(s)	108, 114, 120, 721, 973
NspI	RCATGY	1 cut(s)	932
OliI	CACNNNNGTG	2 cut(s)	1056, 1588
PaeR7I	CTCGAG	1 cut(s)	374
PaqCI	CACCTGC	2 cut(s)	691, 1411
PciI	ACATGT	1 cut(s)	928
PctI	GAATGC	1 cut(s)	1079
PdmI	GAANNNNTTC	1 cut(s)	1044
PfeI	GAWTC	3 cut(s)	48, 424, 1198
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	3 cut(s)	220, 803, 1419
PleI	GAGTC	1 cut(s)	1458
PpsI	GAGTC	1 cut(s)	1458
Ppu21I	YACGTR	1 cut(s)	1599
PpuMI	RGGWCCY	3 cut(s)	330, 1004, 1633
PscI	ACATGT	1 cut(s)	928
Psp124BI	GAGCTC	2 cut(s)	13, 306
Psp5II	RGGWCCY	3 cut(s)	330, 1004, 1633
Psp6I	CCWGG	3 cut(s)	198, 470, 804
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	3 cut(s)	198, 470, 804
PspN4I	GGNNCC	9 cut(s)	129, 217, 331, 332, 563, 1006, 1321, 1635, 1739
PspPPI	RGGWCCY	3 cut(s)	330, 1004, 1633
PspXI	VCTCGAGB	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	1668
PsuI	RGATCY	3 cut(s)	763, 1363, 1737
PvuII	CAGCTG	1 cut(s)	1316
RsaI	GTAC	8 cut(s)	182, 191, 284, 419, 670, 1088, 1098, 1508
RsaNI	GTAC	8 cut(s)	181, 190, 283, 418, 669, 1087, 1097, 1507
RseI	CAYNNNNRTG	3 cut(s)	1056, 1502, 1588
SacI	GAGCTC	2 cut(s)	13, 306
SaqAI	TTAA	2 cut(s)	77, 585
SatI	GCNGC	3 cut(s)	219, 802, 1418
Sau3AI	GATC	8 cut(s)	555, 589, 705, 763, 1060, 1180, 1363, 1737
SchI	GAGTC	1 cut(s)	1459
ScrFI	CCNGG	6 cut(s)	200, 349, 350, 472, 478, 806
SduI	GDGCHC	5 cut(s)	13, 306, 664, 864, 1445
SfaNI	GCATC	6 cut(s)	155, 161, 167, 173, 1513, 1579
SfcI	CTRYAG	3 cut(s)	1066, 1564, 1664
SfiI	GGCCNNNNNGGCC	1 cut(s)	801
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	6 cut(s)	172, 330, 340, 562, 1004, 1633
SlaI	CTCGAG	1 cut(s)	374
SmaI	CCCGGG	1 cut(s)	350
SmiMI	CAYNNNNRTG	3 cut(s)	1056, 1502, 1588
SmlI	CTYRAG	3 cut(s)	374, 1079, 1465
SmoI	CTYRAG	3 cut(s)	374, 1079, 1465
SnaBI	TACGTA	1 cut(s)	1599
Sse9I	AATT	7 cut(s)	55, 487, 569, 716, 908, 1260, 1721
SstI	GAGCTC	2 cut(s)	13, 306
StyD4I	CCNGG	6 cut(s)	198, 347, 348, 470, 476, 804
StyI	CCWWGG	1 cut(s)	753
TaiI	ACGT	3 cut(s)	980, 1056, 1601
TaqI	TCGA	2 cut(s)	375, 992
TasI	AATT	7 cut(s)	55, 487, 569, 716, 908, 1260, 1721
TatI	WGTACW	2 cut(s)	180, 1086
TauI	GCSGC	2 cut(s)	221, 804
TfiI	GAWTC	3 cut(s)	48, 424, 1198
Tru1I	TTAA	2 cut(s)	77, 585
Tru9I	TTAA	2 cut(s)	77, 585
TscAI	CASTG	4 cut(s)	22, 1114, 1295, 1622
TseFI	GTSAC	5 cut(s)	108, 114, 120, 721, 973
TseI	GCWGC	1 cut(s)	1417
Tsp45I	GTSAC	5 cut(s)	108, 114, 120, 721, 973
TspDTI	ATGAA	6 cut(s)	728, 1053, 1272, 1355, 1476, 1626
TspGWI	ACGGA	3 cut(s)	1049, 1562, 1733
TspMI	CCCGGG	1 cut(s)	348
TspRI	CASTG	4 cut(s)	22, 1114, 1295, 1622
Van91I	CCANNNNNTGG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	660
VpaK11BI	GGWCC	6 cut(s)	172, 330, 340, 562, 1004, 1633
XagI	CCTNNNNNAGG	1 cut(s)	622
XapI	RAATTY	1 cut(s)	1260
XceI	RCATGY	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	374
XmaI	CCCGGG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.