Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005889

Physical Location & Seq

Genomic Coordinates Reverse (-)

56259608 .. 56261381

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0439200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCATAAAAAAAGAAATCAATGCCCTCTTCCTTTTCTTCTTCTTATTAAATCCCCAGAGCTGTTGTCTCTCTTTTCCATTGTGGGATCAAAAATGATGAGTGGAGGAAATCCAAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCCTTTAAAAGAAGACTGGACTCCTCAATCTCTTCCAGACTCTTCCCTCACCACCCTTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCGTACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTACTACAAAGACTACTCCTAACAATAATAATACTATTCCAACACCTCCAGAGTACAACCCTGCTTCAATCCAAAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCCTCATCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTAGGCCACAGGGTTCCGGTACCAACCCTCAACTTTTTCTCAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGCAAATGCAAGAAGCTTAATGAGCTCCTATAAAGGCTACTCATCCCAATCTCAGTTTCAAAGCCTCACAGATCATTATCCACAGCAGCAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATCAAAACAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTTGATCTTGCACCCAATTCCAGACTTCATAATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

360

Amino Acids

41.02

Weight (kDa)

9.28

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	47 - 77	2.6e-14	QLQ
WRC	PF08879	113 - 155	3.7e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15110
fragaria_vesca	FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510
malus_domestica	MD17G1129200.v1.1
prunus_persica	Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1
pyrus_communis	pycom17g12140
rosa_chinensis	RchiOBHm_Chr2g0153541
rosa_laevigata	RLG00000020708
rosa_multiflora	Rmu_sc0003976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094940
rosa_rugosa	Rorug02G0439200 Rorug02G0439300
rosa_samantha	Rh2AG503100 Rh2BG513800 Rh2CG488900 Rh2DG525500
rosa_wichuraiana	Rw2G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	988
Acc65I	GGTACC	2 cut(s)	135, 674
AccB1I	GGYRCC	2 cut(s)	135, 674
AclWI	GGATC	3 cut(s)	94, 712, 777
AfaI	GTAC	6 cut(s)	137, 194, 398, 413, 536, 676
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	9 cut(s)	170, 190, 387, 450, 549, 582, 749, 863, 937
AjnI	CCWGG	3 cut(s)	343, 897, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AluBI	AGCT	9 cut(s)	61, 166, 179, 467, 722, 778, 819, 828, 974
AluI	AGCT	9 cut(s)	61, 166, 179, 467, 722, 778, 819, 828, 974
Alw21I	GWGCWC	1 cut(s)	830
Alw26I	GTCTC	3 cut(s)	72, 205, 1005
AlwI	GGATC	3 cut(s)	94, 712, 777
AoxI	GGCC	2 cut(s)	659, 1016
ApeKI	GCWGC	2 cut(s)	889, 907
Asp700I	GAANNNNTTC	1 cut(s)	445
Asp718I	GGTACC	2 cut(s)	135, 674
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	275, 592
AsuNHI	GCTAGC	1 cut(s)	778
BaeGI	GKGCMC	1 cut(s)	929
BanI	GGYRCC	2 cut(s)	135, 674
BanII	GRGCYC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	253, 792
Bbv12I	GWGCWC	1 cut(s)	830
BbvI	GCAGC	2 cut(s)	901, 919
BccI	CCATC	3 cut(s)	221, 359, 1070
BciT130I	CCWGG	3 cut(s)	345, 899, 1039
BclI	TGATCA	2 cut(s)	724, 976
BcoDI	GTCTC	3 cut(s)	72, 205, 1005
BfaI	CTAG	3 cut(s)	474, 657, 779
BfmI	CTRYAG	1 cut(s)	792
BisI	GCNGC	2 cut(s)	890, 908
BlsI	GCNGC	2 cut(s)	891, 909
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	3 cut(s)	345, 899, 1039
BmiI	GGNNCC	3 cut(s)	137, 670, 676
BmrFI	CCNGG	3 cut(s)	345, 899, 1039
BmtI	GCTAGC	1 cut(s)	782
BpiI	GAAGAC	2 cut(s)	253, 792
BpmI	CTGGAG	2 cut(s)	225, 513
BsaBI	GATNNNNATC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	897
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	255, 1019
Bse3DI	GCAATG	1 cut(s)	910
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	3 cut(s)	345, 899, 1039
BseDI	CCNNGG	1 cut(s)	897
BseGI	GGATG	3 cut(s)	213, 845, 907
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	1 cut(s)	869
BseNI	ACTGG	2 cut(s)	255, 1019
BseRI	GAGGAG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	929
BseXI	GCAGC	2 cut(s)	901, 919
BsgI	GTGCAG	1 cut(s)	373
BshFI	GGCC	2 cut(s)	661, 1018
BshNI	GGYRCC	2 cut(s)	135, 674
BsiHKAI	GWGCWC	1 cut(s)	830
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	2 cut(s)	194, 976
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	3 cut(s)	72, 205, 1005
BsmFI	GGGAC	2 cut(s)	194, 976
BsnI	GGCC	2 cut(s)	661, 1018
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	830, 929
Bsp143I	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
BspANI	GGCC	2 cut(s)	661, 1018
BspCNI	CTCAG	1 cut(s)	868
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	137, 670, 676
BspMAI	CTGCAG	1 cut(s)	796
BspOI	GCTAGC	1 cut(s)	782
BspPI	GGATC	3 cut(s)	94, 712, 777
BspT107I	GGYRCC	2 cut(s)	135, 674
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	255, 1019
BssECI	CCNNGG	1 cut(s)	897
BssMI	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
Bst2UI	CCWGG	3 cut(s)	345, 899, 1039
Bst4CI	ACNGT	3 cut(s)	156, 416, 446
Bst6I	CTCTTC	3 cut(s)	33, 271, 281
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	2 cut(s)	408, 855
BstF5I	GGATG	3 cut(s)	213, 845, 907
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	8 cut(s)	89, 226, 707, 727, 772, 877, 979, 1048
BstMAI	GTCTC	3 cut(s)	72, 205, 1005
BstMBI	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	3 cut(s)	345, 899, 1039
BstSCI	CCNGG	3 cut(s)	343, 897, 1037
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	1 cut(s)	929
BstV1I	GCAGC	2 cut(s)	901, 919
BstV2I	GAAGAC	2 cut(s)	253, 792
BstX2I	RGATCY	1 cut(s)	704
BstXI	CCANNNNNNTGG	2 cut(s)	293, 1007
BstYI	RGATCY	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	661, 1018
BtsCI	GGATG	3 cut(s)	213, 845, 907
BtsIMutI	CAGTG	2 cut(s)	161, 927
Cac8I	GCNNGC	1 cut(s)	780
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	122
Csp6I	GTAC	6 cut(s)	136, 193, 397, 412, 535, 675
CviAII	CATG	2 cut(s)	196, 773
CviQI	GTAC	6 cut(s)	136, 193, 397, 412, 535, 675
DdeI	CTNAG	2 cut(s)	408, 855
DpnI	GATC	8 cut(s)	88, 225, 706, 726, 771, 876, 978, 1047
DpnII	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
DraI	TTTAAA	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	988
DseDI	GACNNNNNNGTC	1 cut(s)	988
Eam1104I	CTCTTC	3 cut(s)	33, 271, 281
EarI	CTCTTC	3 cut(s)	33, 271, 281
Ecl136II	GAGCTC	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	828
EcoICRI	GAGCTC	1 cut(s)	828
EcoRII	CCWGG	3 cut(s)	343, 897, 1037
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	830
FaeI	CATG	2 cut(s)	199, 776
FaqI	GGGAC	2 cut(s)	194, 976
FatI	CATG	2 cut(s)	195, 772
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	2 cut(s)	724, 976
Fnu4HI	GCNGC	2 cut(s)	890, 908
FokI	GGATG	3 cut(s)	200, 832, 914
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	2 cut(s)	890, 908
FspBI	CTAG	3 cut(s)	474, 657, 779
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	890, 908
GsuI	CTGGAG	2 cut(s)	225, 513
HaeIII	GGCC	2 cut(s)	661, 1018
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	199, 776
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	2 cut(s)	465, 817
HinfI	GANTC	5 cut(s)	207, 254, 273, 404, 797
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	275, 592
Hpy166II	GTNNAC	1 cut(s)	1029
Hpy188I	TCNGA	1 cut(s)	981
Hpy188III	TCNNGA	7 cut(s)	204, 270, 450, 530, 702, 773, 1062
Hpy8I	GTNNAC	1 cut(s)	1029
HpyAV	CCTTC	4 cut(s)	342, 588, 755, 793
HpyCH4III	ACNGT	3 cut(s)	156, 416, 446
HpyCH4V	TGCA	7 cut(s)	4, 354, 430, 794, 806, 812, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	2 cut(s)	408, 855
Hsp92II	CATG	2 cut(s)	199, 776
HspAI	GCGC	1 cut(s)	120
KpnI	GGTACC	2 cut(s)	139, 678
Ksp22I	TGATCA	2 cut(s)	724, 976
Kzo9I	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	2 cut(s)	901, 919
MaeI	CTAG	3 cut(s)	474, 657, 779
MalI	GATC	8 cut(s)	88, 225, 706, 726, 771, 876, 978, 1047
MboI	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	2 cut(s)	830, 929
MluCI	AATT	2 cut(s)	127, 1057
MlyI	GAGTC	4 cut(s)	216, 248, 267, 806
MmeI	TCCRAC	1 cut(s)	545
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	445
MseI	TTAA	3 cut(s)	48, 240, 821
MslI	CAYNNNNRTG	2 cut(s)	915, 1074
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	3 cut(s)	345, 899, 1039
MvaI	CCWGG	3 cut(s)	345, 899, 1039
MwoI	GCNNNNNNNGC	1 cut(s)	825
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
NheI	GCTAGC	1 cut(s)	778
NlaIII	CATG	2 cut(s)	199, 776
NlaIV	GGNNCC	3 cut(s)	137, 670, 676
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	445
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	891, 909
PleI	GAGTC	4 cut(s)	215, 248, 267, 805
PpsI	GAGTC	4 cut(s)	215, 248, 267, 805
Psp124BI	GAGCTC	1 cut(s)	830
Psp6I	CCWGG	3 cut(s)	343, 897, 1037
PspGI	CCWGG	3 cut(s)	343, 897, 1037
PspN4I	GGNNCC	3 cut(s)	137, 670, 676
PstI	CTGCAG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	704
RsaI	GTAC	6 cut(s)	137, 194, 398, 413, 536, 676
RsaNI	GTAC	6 cut(s)	136, 193, 397, 412, 535, 675
RseI	CAYNNNNRTG	2 cut(s)	915, 1074
SacI	GAGCTC	1 cut(s)	830
SaqAI	TTAA	3 cut(s)	48, 240, 821
SatI	GCNGC	2 cut(s)	890, 908
Sau3AI	GATC	8 cut(s)	86, 223, 704, 724, 769, 874, 976, 1045
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	4 cut(s)	216, 248, 267, 806
ScrFI	CCNGG	3 cut(s)	345, 899, 1039
SduI	GDGCHC	2 cut(s)	830, 929
SfcI	CTRYAG	1 cut(s)	792
SmiMI	CAYNNNNRTG	2 cut(s)	915, 1074
Sse9I	AATT	2 cut(s)	127, 1057
SspMI	CTAG	3 cut(s)	474, 657, 779
SstI	GAGCTC	1 cut(s)	830
StyD4I	CCNGG	3 cut(s)	343, 897, 1037
TaaI	ACNGT	3 cut(s)	156, 416, 446
TasI	AATT	2 cut(s)	127, 1057
TatI	WGTACW	3 cut(s)	192, 411, 534
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	3 cut(s)	48, 240, 821
Tru9I	TTAA	3 cut(s)	48, 240, 821
TscAI	CASTG	2 cut(s)	161, 934
TseI	GCWGC	2 cut(s)	889, 907
TspDTI	ATGAA	3 cut(s)	621, 624, 1058
TspRI	CASTG	2 cut(s)	161, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1004
XmnI	GAANNNNTTC	1 cut(s)	445
XspI	CTAG	3 cut(s)	474, 657, 779
ZrmI	AGTACT	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.