Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005889

Physical Location & Seq

Genomic Coordinates Reverse (-)

56275786 .. 56277039

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0439300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAAAATATAGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCAGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCTGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGATGACAGGTGACAATTGGGGAATTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGATCACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGCACTAACATTGCAATTGAGGCAGCAGACATTGTGCTAATGAAGAGTAGGTTTCCTCTTTATTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

231

Amino Acids

24.45

Weight (kDa)

4.56

Isoelectric Point (pI)

23.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	10 - 201	4.6e-25	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15110
fragaria_vesca	FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510 FvH4_6g39510
malus_domestica	MD17G1129200.v1.1
prunus_persica	Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1 Prupe.3G185900_v2.0.a1
pyrus_communis	pycom17g12140
rosa_chinensis	RchiOBHm_Chr2g0153541
rosa_laevigata	RLG00000020708
rosa_multiflora	Rmu_sc0003976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00094940
rosa_rugosa	Rorug02G0439200 Rorug02G0439300
rosa_samantha	Rh2AG503100 Rh2BG513800 Rh2CG488900 Rh2DG525500
rosa_wichuraiana	Rw2G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	23, 101, 445
AcuI	CTGAAG	2 cut(s)	300, 522
AdeI	CACNNNGTG	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	3 cut(s)	47, 219, 278
AluI	AGCT	3 cut(s)	47, 219, 278
Alw21I	GWGCWC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	72, 78, 131
ApeKI	GCWGC	4 cut(s)	41, 44, 596, 647
ApoI	RAATTY	3 cut(s)	23, 101, 445
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	131, 229
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	4 cut(s)	184, 437, 494, 573
AvaII	GGWCC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	28, 56, 608, 659
BccI	CCATC	4 cut(s)	217, 311, 550, 560
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	130
BfaI	CTAG	3 cut(s)	269, 305, 338
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	4 cut(s)	42, 45, 597, 648
BlsI	GCNGC	4 cut(s)	43, 46, 598, 649
Bme1390I	CCNGG	2 cut(s)	130, 363
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	131, 229
BmrFI	CCNGG	2 cut(s)	130, 363
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	244, 579
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	354, 374
BpuMI	CCSGG	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	69, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	2 cut(s)	166, 301
Bse3DI	GCAATG	2 cut(s)	237, 633
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	69, 75
BseMI	GCAATG	2 cut(s)	237, 633
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	166, 301
BseXI	GCAGC	4 cut(s)	28, 56, 608, 659
BshFI	GGCC	3 cut(s)	74, 80, 133
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	129
BsnI	GGCC	3 cut(s)	74, 80, 133
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	349, 499
BspANI	GGCC	3 cut(s)	74, 80, 133
BspCNI	CTCAG	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	46
BspPI	GGATC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	237, 633
BsrI	ACTGG	2 cut(s)	166, 301
BssECI	CCNNGG	2 cut(s)	69, 75
BssMI	GATC	2 cut(s)	349, 499
BssT1I	CCWWGG	2 cut(s)	69, 75
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	3 cut(s)	59, 478, 550
Bst6I	CTCTTC	2 cut(s)	111, 662
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	288, 534, 625
BstDEI	CTNAG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	352, 502
BstMBI	GATC	2 cut(s)	349, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 593, 620, 644
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	128, 361
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	28, 56, 608, 659
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	74, 80, 133
BtgZI	GCGATG	1 cut(s)	569
BtsIMutI	CAGTG	3 cut(s)	64, 353, 546
Cac8I	GCNNGC	3 cut(s)	288, 534, 625
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	131, 229
CsiI	ACCWGGT	1 cut(s)	361
CviAII	CATG	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	351, 501
DpnII	GATC	2 cut(s)	349, 499
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	111, 662
EarI	CTCTTC	2 cut(s)	111, 662
Eco130I	CCWWGG	2 cut(s)	69, 75
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	300, 522
EcoRI	GAATTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	69, 75
ErhI	CCWWGG	2 cut(s)	69, 75
FaeI	CATG	1 cut(s)	146
FaiI	YATR	8 cut(s)	11, 30, 93, 144, 314, 386, 413, 482
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	42, 45, 597, 648
Fsp4HI	GCNGC	4 cut(s)	42, 45, 597, 648
FspBI	CTAG	3 cut(s)	269, 305, 338
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	4 cut(s)	42, 45, 597, 648
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	74, 80, 133
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	121, 301, 578
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	184, 437, 494, 573
Hpy166II	GTNNAC	3 cut(s)	55, 62, 229
Hpy188I	TCNGA	2 cut(s)	107, 349
Hpy188III	TCNNGA	2 cut(s)	20, 371
Hpy8I	GTNNAC	3 cut(s)	55, 62, 229
HpyAV	CCTTC	3 cut(s)	169, 275, 517
HpyCH4III	ACNGT	3 cut(s)	59, 478, 550
HpyCH4V	TGCA	6 cut(s)	44, 242, 257, 443, 532, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 593, 620, 644
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	349, 499
Lsp1109I	GCAGC	4 cut(s)	28, 56, 608, 659
LweI	GCATC	2 cut(s)	244, 579
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	3 cut(s)	269, 305, 338
MaeIII	GTNAC	2 cut(s)	164, 425
MalI	GATC	2 cut(s)	351, 501
MboI	GATC	2 cut(s)	349, 499
MboII	GAAGA	4 cut(s)	122, 128, 272, 679
MfeI	CAATTG	3 cut(s)	430, 615, 639
MhlI	GDGCHC	1 cut(s)	370
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	572
MnlI	CCTC	4 cut(s)	43, 163, 637, 690
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	130, 363
MunI	CAATTG	3 cut(s)	430, 615, 639
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	4 cut(s)	139, 593, 620, 644
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	349, 499
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	164, 425
PfeI	GAWTC	2 cut(s)	121, 301
PkrI	GCNGC	4 cut(s)	43, 46, 598, 649
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspPI	GGNCC	2 cut(s)	131, 229
PstI	CTGCAG	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	4 cut(s)	42, 45, 597, 648
Sau3AI	GATC	2 cut(s)	349, 499
Sau96I	GGNCC	2 cut(s)	131, 229
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	130, 363
SduI	GDGCHC	1 cut(s)	370
SetI	ASST	9 cut(s)	49, 54, 221, 270, 280, 367, 427, 499, 677
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	244, 579
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	369, 389
SmoI	CTYRAG	2 cut(s)	369, 389
SspMI	CTAG	3 cut(s)	269, 305, 338
StyD4I	CCNGG	2 cut(s)	128, 361
StyI	CCWWGG	2 cut(s)	69, 75
TaaI	ACNGT	3 cut(s)	59, 478, 550
TaqI	TCGA	2 cut(s)	19, 252
TfiI	GAWTC	2 cut(s)	121, 301
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	64, 360, 553
TseFI	GTSAC	2 cut(s)	164, 425
TseI	GCWGC	4 cut(s)	41, 44, 596, 647
Tsp45I	GTSAC	2 cut(s)	164, 425
TspDTI	ATGAA	6 cut(s)	17, 45, 129, 413, 474, 680
TspRI	CASTG	3 cut(s)	64, 360, 553
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	3 cut(s)	23, 101, 445
XspI	CTAG	3 cut(s)	269, 305, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.