Rorug02G0554100

At4g28440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010660
Physical Location & Seq
Reverse (-)
68142070 .. 68145738
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0554100.1

Sequence Viewer

Length: 906 bp
ATGTATTCGGTTTCCGGCTCCAAGATTTCGGTTTTCGCTGTCAAAGATGTTGGTGGTGATGGGGTGGCTGTGAAATTGATGAGGTGTGCTGTCATTGATTGCTGCAAGCTTGTGTGGTCCATTAGCGTTTCGTCCGGGTTCTTGATTCTGGGGGAAGATGATGGAGTGAGGGTTTTCAATTTGAGGCAGCTTGTGAAAGGGCGGGTTCGAAAGCCTAAGAGTTCGAATTCGAGTTTGAAATTGGGTTTGTTAAATGGGGTGATTGGTGACAATGTGCAAGAAGCTGGGGATTGTGCAAATAAACATGGAAGTGGAAAGTGTGAAGGGACTTGCGATGGTTACTTGTGCCGGAAGAATGATAGGAATTGTGTCTCTGTCAAGCGGAGATCTGTTAAACTGAAACAAGACTCATGTGAAGACGGAGTGTGTTTTGCGGCATTCAAGGGCAAGGAGTTAGAAACCTCTAAATCAAGAAGAAGGATACCAGTGAAGGCAATTTCCATTGACGCAGTGTCCCCTAACAAACTTTTAATCCTGGACTCAGATGGAGGTTTACAGCTTTTGCACCTTTCCATCCCTGTAATTGGATCAGATATAACTACTTTCATGCAGCAGTTGCCTAACACTATGAAAGTGCAAAAGGTGGCTGTTCTTCCTGAAATAGCTGCAAGAACACAATCTGTTTGGGTGTCAGATGGCTACAATTCTGTGCAGATGATGGTGGCATCTGACATGGATAGTGCAGTTAGCCAAAATGATTTAAATGAGAGCAAGGAAAAGCCGATGCATATCACAGTTGGTCTCACAATTTTTACTGGGGAAAAGATTCAAGACCTTACTCCTTTGGCCGGAAATGCTATTTTGATTCTTGGACAAGGAAACTTGTACACGTATGCTACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.39

Weight (kDa)

8.84

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 202, 382, 434
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 1 cut(s) 226
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 2 cut(s) 584, 848
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 4 cut(s) 178, 238, 442, 830
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 5 cut(s) 109, 190, 284, 559, 665
AluI AGCT 5 cut(s) 109, 190, 284, 559, 665
Alw26I GTCTC 2 cut(s) 376, 806
AlwI GGATC 1 cut(s) 595
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 4 cut(s) 102, 187, 610, 665
ApoI RAATTY 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 3 cut(s) 68, 271, 278
AsuII TTCGAA 2 cut(s) 208, 224
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 89, 199, 622, 652
BccI CCATC 7 cut(s) 53, 155, 329, 539, 581, 689, 712
BciT130I CCWGG 1 cut(s) 536
BciVI GTATCC 1 cut(s) 474
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 376, 806
BfuI GTATCC 1 cut(s) 474
BglII AGATCT 1 cut(s) 386
BisI GCNGC 5 cut(s) 103, 188, 435, 611, 666
BlsI GCNGC 5 cut(s) 104, 189, 436, 612, 667
Bme1390I CCNGG 2 cut(s) 136, 536
Bme18I GGWCC 1 cut(s) 117
BmeRI GACNNNNNGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 136, 536
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 2 cut(s) 734, 774
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 423
Bpu14I TTCGAA 2 cut(s) 208, 224
BpuMI CCSGG 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 891
BsaBI GATNNNNATC 1 cut(s) 788
BsaI GGTCTC 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 848
Bse1I ACTGG 2 cut(s) 485, 820
Bse8I GATNNNNATC 1 cut(s) 788
BseBI CCWGG 1 cut(s) 536
BseGI GGATG 1 cut(s) 573
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 2 cut(s) 584, 848
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 2 cut(s) 485, 820
BseXI GCAGC 4 cut(s) 89, 199, 622, 652
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 2 cut(s) 731, 762
BshFI GGCC 1 cut(s) 848
BsiSI CCGG 4 cut(s) 15, 135, 349, 849
BslFI GGGAC 2 cut(s) 340, 499
BslI CCNNNNNNNGG 2 cut(s) 584, 848
BsmAI GTCTC 2 cut(s) 376, 806
BsmFI GGGAC 2 cut(s) 340, 499
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 848
Bso31I GGTCTC 1 cut(s) 806
Bsp119I TTCGAA 2 cut(s) 208, 224
Bsp1407I TGTACA 1 cut(s) 885
Bsp143I GATC 2 cut(s) 386, 587
BspACI CCGC 3 cut(s) 202, 382, 434
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 2 cut(s) 208, 224
BspTNI GGTCTC 1 cut(s) 806
BsrGI TGTACA 1 cut(s) 885
BsrI ACTGG 2 cut(s) 485, 820
BssMI GATC 2 cut(s) 386, 587
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 796
BstAPI GCANNNNNTGC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 885
BstBAI YACGTR 1 cut(s) 891
BstBI TTCGAA 2 cut(s) 208, 224
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 216, 541
BstF5I GGATG 1 cut(s) 573
BstKTI GATC 2 cut(s) 389, 590
BstMAI GTCTC 2 cut(s) 376, 806
BstMBI GATC 2 cut(s) 386, 587
BstMWI GCNNNNNNNGC 2 cut(s) 616, 854
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 134, 534
BstV1I GCAGC 4 cut(s) 89, 199, 622, 652
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 1 cut(s) 848
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 492, 516
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 886
CviAII CATG 4 cut(s) 305, 411, 607, 733
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 2 cut(s) 216, 541
DpnI GATC 2 cut(s) 388, 589
DpnII GATC 2 cut(s) 386, 587
DraI TTTAAA 1 cut(s) 762
DriI GACNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 846
Eam1105I GACNNNNNGTC 1 cut(s) 511
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 534
EcoT22I ATGCAT 1 cut(s) 789
FaeI CATG 4 cut(s) 308, 414, 610, 736
FaiI YATR 8 cut(s) 306, 412, 596, 608, 629, 734, 789, 894
FaqI GGGAC 2 cut(s) 340, 499
FatI CATG 4 cut(s) 304, 410, 606, 732
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 103, 188, 435, 611, 666
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 5 cut(s) 103, 188, 435, 611, 666
GluI GCNGC 5 cut(s) 103, 188, 435, 611, 666
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 848
HapII CCGG 4 cut(s) 15, 135, 349, 849
HgaI GACGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 308, 414, 610, 736
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 145, 407, 539, 826, 865
HpaII CCGG 4 cut(s) 15, 135, 349, 849
HphI GGTGA 3 cut(s) 68, 271, 278
Hpy166II GTNNAC 2 cut(s) 554, 888
Hpy188I TCNGA 4 cut(s) 544, 592, 694, 730
Hpy188III TCNNGA 5 cut(s) 142, 471, 656, 830, 903
Hpy8I GTNNAC 2 cut(s) 554, 888
HpyAV CCTTC 3 cut(s) 317, 471, 484
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 1 cut(s) 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 616, 854
HpyF3I CTNAG 2 cut(s) 216, 541
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 4 cut(s) 308, 414, 610, 736
Kzo9I GATC 2 cut(s) 386, 587
LmnI GCTCC 1 cut(s) 23
Lsp1109I GCAGC 4 cut(s) 89, 199, 622, 652
LweI GCATC 2 cut(s) 734, 774
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 2 cut(s) 266, 338
MalI GATC 2 cut(s) 388, 589
MboI GATC 2 cut(s) 386, 587
MboII GAAGA 5 cut(s) 167, 364, 428, 486, 644
MflI RGATCY 1 cut(s) 386
MluCI AATT 9 cut(s) 74, 178, 226, 239, 364, 495, 582, 703, 807
MlyI GAGTC 2 cut(s) 401, 533
MnlI CCTC 5 cut(s) 75, 162, 177, 472, 542
Mph1103I ATGCAT 1 cut(s) 789
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 4 cut(s) 251, 393, 530, 761
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 4 cut(s) 15, 135, 349, 849
MspR9I CCNGG 2 cut(s) 136, 536
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 2 cut(s) 616, 854
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 386, 587
NlaIII CATG 4 cut(s) 308, 414, 610, 736
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 789
NspV TTCGAA 2 cut(s) 208, 224
PctI GAATGC 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 3 cut(s) 145, 826, 865
PfoI TCCNGGA 1 cut(s) 534
PkrI GCNGC 5 cut(s) 104, 189, 436, 612, 667
PleI GAGTC 2 cut(s) 401, 533
PpsI GAGTC 2 cut(s) 401, 533
Ppu21I YACGTR 1 cut(s) 891
Psp6I CCWGG 1 cut(s) 534
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 4 cut(s) 251, 393, 530, 761
SatI GCNGC 5 cut(s) 103, 188, 435, 611, 666
Sau3AI GATC 2 cut(s) 386, 587
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 401, 533
ScrFI CCNGG 2 cut(s) 136, 536
SfaNI GCATC 2 cut(s) 734, 774
SfuI TTCGAA 2 cut(s) 208, 224
SinI GGWCC 1 cut(s) 117
SmiI ATTTAAAT 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 9 cut(s) 74, 178, 226, 239, 364, 495, 582, 703, 807
SsiI CCGC 3 cut(s) 202, 382, 434
StyD4I CCNGG 2 cut(s) 134, 534
SwaI ATTTAAAT 1 cut(s) 762
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 1 cut(s) 893
TaqI TCGA 3 cut(s) 208, 224, 230
TasI AATT 9 cut(s) 74, 178, 226, 239, 364, 495, 582, 703, 807
TatI WGTACW 1 cut(s) 885
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 3 cut(s) 145, 826, 865
Tru1I TTAA 4 cut(s) 251, 393, 530, 761
Tru9I TTAA 4 cut(s) 251, 393, 530, 761
TscAI CASTG 2 cut(s) 492, 516
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 4 cut(s) 102, 187, 610, 665
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 595, 644
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 492, 516
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.