Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002991

Physical Location & Seq

Genomic Coordinates Reverse (-)

4184216 .. 4184368

Gene Structure 153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGCAAAACTGGTGCATCTGCCCCCTAGTGATTCTGATCACGTCCCAATTCTTCTGCATGCGAGTAAGGTTCCTATTCCGCAAAGAACTCGGTTTCATAGGTTTAAGTTTGAAGCCTTTTGGCTTTAGCACCCTAAGTGTGATCCATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008324 GO:0008519 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015101 GO:0015203 GO:0015204 GO:0015291 GO:0015293 GO:0015489 GO:0015606 GO:0015695 GO:0015696 GO:0015840 GO:0015846 GO:0015847 GO:0015848 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0042886 GO:0042887 GO:0043562 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0072488 GO:0098655 GO:1902047 GO:1903711

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSF

Protein Analysis

50

Amino Acids

5.93

Weight (kDa)

9.61

Isoelectric Point (pI)

23.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45380
fragaria_vesca	FvH4_5g24140 FvH4_5g24140 FvH4_5g24140 FvH4_5g24140
malus_domestica	MD06G1017300.v1.1
prunus_persica	Prupe.5G019100_v2.0.a1
pyrus_communis	pycom06g01400 pycom06g01410
rosa_chinensis	RchiOBHm_Chr4g0401421 RchiOBHm_Chr4g0401521 RchiOBHm_Chr7g0213721 RchiOBHm_Chr7g0213811
rosa_laevigata	RLG00000002782 RLG00000002785 RLG00000002792 RLG00000009147
rosa_multiflora	Rmu_sc0000328.1_g000016 Rmu_sc0001524.1_g000047 Rmu_sc0002657.1_g000010 Rmu_sc0004549.1_g000018 Rmu_sc0006560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00245690 Rroxscaffold_5G00346150
rosa_rugosa	Rorug04G0029700 Rorug04G0030000 Rorug04G0030100 Rorug07G0144600
rosa_samantha	Rh4AG107000 Rh4AG107300 Rh4AG107900 Rh4CG116200 Rh4DG099100 Rh7BG271000 Rh7DG283200
rosa_wichuraiana	Rw0G009180 Rw4G008720 Rw4G008750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BclI	TGATCA	1 cut(s)	36
BfaI	CTAG	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	71
BmsI	GCATC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	14
Bse8I	GATNNNNATC	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	36, 141
BspACI	CCGC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	36, 141
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	39, 144
BstMBI	GATC	2 cut(s)	36, 141
BstNSI	RCATGY	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	59
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	115, 123
CviKI_1	RGCY	2 cut(s)	115, 123
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	38, 143
DpnII	GATC	2 cut(s)	36, 141
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 98
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	36
FspBI	CTAG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	4, 15, 57
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 141
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	38, 143
MboI	GATC	2 cut(s)	36, 141
MboII	GAAGA	1 cut(s)	43
MluCI	AATT	1 cut(s)	47
MseI	TTAA	1 cut(s)	104
NdeII	GATC	2 cut(s)	36, 141
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	2 cut(s)	36, 141
SetI	ASST	3 cut(s)	44, 71, 103
SfaNI	GCATC	1 cut(s)	24
SgeI	CNNG	6 cut(s)	22, 38, 52, 70, 74, 101
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	44
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.