Rh7BG271000

Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
24906340 .. 24910679
4340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG271000.1

Sequence Viewer

Length: 1590 bp
ATGCTGCTGCTCGGTGGTTCTGCTGTTGTAAATGCACTTACCGGAGTAAACATCTATGCTGCTAGCTTCCTGATACCTCTTGGAGTAATAGTCTACACTTTAGCTGGAGGTCTAAAAGCCACATTCTTGGCAAGCTATATACATTCTGTTATAGTTCATGTGGTCCTAGTCATATTTGTTTACCTTGTATATACGGCAAGCAATGAGCTCGGTAGCCCCAGAGTTGTGTACGACCGTCTGGTAGAGGTAGCAAGTAAATCAAGAATCTGTCAGGAGCCAATTTCTCATCATGGGCAGTCTTGTGGTCCTGTTGATGGGAATTACAAAGGGTCGTACCTAACAATGCTGAGTTCCGGAGGGCTAGTGTTCGGGATTATCAACATTGTTGGAAACTTTGGCACTGTTTTTGTTGACAATGGATATTGGGTAAGCGCCATAGCTGCACGGCCATCATCAACTCACAAGGGTTACTTGTTGGGTGGGCTTGTCTGGTTTGCAGTCCCATTCTCTTTGGCAACATCACTAGGTCTGGGATCACTGGCCCTTGACTTACCGATAACAGCAAGTGAAGCAAGTCGTGGTCTTGTTCCTCCTGCCACAGCTATAGCTTTGATGGGAAAAGGAGGATCAGTTCTTCTTCTTACTATGCTCTTCATGGCAGTGACATCTGCTGGTTCTTCAGAGCTTATAGCAGTATCCTCATTATGTACATATGATATCTACCGCACATACATATATCCAGATGCAACTGGAAAGACAATCCTCAAGGTATCTAGGGCTGTCATCCTTGGTTTCGGATGCTTTATGGGGTTGTTAGCAGTGATACTAAACAAGGCAGGAGTTTCATTGGGTTGGATGTATCTAGCAATGGGAGTGCTCATTGGCTCAGCAGTACTCCCCATTGCTTTTATGCTTCTATGGAGAAAGGCAAATGCAATTGGAGCAATTCTGGGAGCAACCATTGGTTGTCTTCTTGGGATCATCACTTGGCTCTCGGTTGCGAAAATTGAGTATGGCCGAGTGAATCTTGACACAACAGGCAGGAATGCACCAATGCTTGCCGGAAACCTTGTCTCTATACTCACTGGTGGCGCTATACATGCTATCTGTAGCTTTGTGTCACCGCAAAACTACGATTGGGGCACCACTAAGCAGATCACAGTGGTTGAGAAGGAAAAGAGTGAACTGCCAGTGGAAGAGTACAAGGAGGAGAAATTATTGAGAGCAAAAGCATGGATAGTGAAATGGGGTGTTGGATTTACTTTTGTGATTGTTTTGTTGTGGCCTCTTCTAAGTCTTCCAGCAGGGGATTTCAGTATAGGGTACTTCACATTCTGGGCAGTGATTGCAATAGCATGGGGTACAATTGGTTCCATTGCCATCATTGCTTTACCAGTATTTGAGAGCTGGGAAACGATCCGGAGTGTCCTTCTGGGCATGTTTACAAATGACAGGCTCATGGAAAAGGTTGAAGAAATGAACTTGAGGATGCGCACAATCATTTTGGCTATACCAGAAGCAGAGAGAATTTACTTGCTTGAGAAGGAGAAGGCTAAGAAGGAAGAACCATCAGAGCAAGTGCAACCATAA

Protein Analysis

529

Amino Acids

56.84

Weight (kDa)

8.36

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSF PF00474 3 - 322 5.1e-14 Sodium:solute symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1493
AccB1I GGYRCC 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 93
AccIII TCCGGA 2 cut(s) 353, 1419
AciI CCGC 2 cut(s) 724, 1124
AclWI GGATC 4 cut(s) 541, 634, 986, 1411
AcoI YGGCCR 2 cut(s) 446, 1015
AcsI RAATTY 1 cut(s) 1527
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 7 cut(s) 230, 335, 709, 894, 1202, 1325, 1363
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 1472
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
Alw21I GWGCWC 2 cut(s) 210, 879
Alw26I GTCTC 1 cut(s) 1078
AlwI GGATC 4 cut(s) 541, 634, 986, 1411
Aor13HI TCCGGA 2 cut(s) 353, 1419
AoxI GGCC 4 cut(s) 446, 540, 1015, 1283
ApeKI GCWGC 4 cut(s) 4, 7, 59, 440
ApoI RAATTY 1 cut(s) 1527
AspLEI GCGC 3 cut(s) 434, 1094, 1494
AspS9I GGNCC 3 cut(s) 163, 305, 541
AsuHPI GGTGA 1 cut(s) 1113
AsuNHI GCTAGC 1 cut(s) 62
AvaII GGWCC 2 cut(s) 163, 305
BaeGI GKGCMC 1 cut(s) 1145
BanI GGYRCC 1 cut(s) 1142
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 962, 1289
Bbv12I GWGCWC 2 cut(s) 210, 879
BbvI GCAGC 2 cut(s) 46, 427
BccI CCATC 5 cut(s) 308, 457, 607, 1388, 1576
BceAI ACGGC 2 cut(s) 210, 461
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciVI GTATCC 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 1078
BfaI CTAG 6 cut(s) 63, 167, 362, 524, 774, 863
BfmI CTRYAG 2 cut(s) 603, 1108
BfoI RGCGCY 2 cut(s) 435, 1095
BfuI GTATCC 1 cut(s) 706
BisI GCNGC 4 cut(s) 5, 8, 60, 441
BlpI GCTNAGC 1 cut(s) 886
BlsI GCNGC 4 cut(s) 6, 9, 61, 442
BmcAI AGTACT 1 cut(s) 894
Bme18I GGWCC 2 cut(s) 163, 305
BmgT120I GGNCC 3 cut(s) 163, 305, 541
BmiI GGNNCC 3 cut(s) 276, 1144, 1372
BmsI GCATC 3 cut(s) 733, 788, 1479
BmtI GCTAGC 1 cut(s) 66
BpiI GAAGAC 2 cut(s) 962, 1289
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 886
BpuEI CTTGAG 3 cut(s) 749, 1504, 1559
BsaJI CCNNGG 1 cut(s) 787
BsaWI WCCGGW 3 cut(s) 41, 353, 1419
BsaXI ACNNNNNCTCC 6 cut(s) 75, 105, 348, 378, 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 5 cut(s) 543, 754, 1090, 1190, 1394
Bse3DI GCAATG 5 cut(s) 208, 873, 900, 1374, 1383
BseAI TCCGGA 2 cut(s) 353, 1419
BseDI CCNNGG 1 cut(s) 787
BseGI GGATG 4 cut(s) 783, 803, 861, 1494
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMI GCAATG 5 cut(s) 208, 873, 900, 1374, 1383
BseMII CTCAG 2 cut(s) 338, 900
BseNI ACTGG 5 cut(s) 543, 754, 1090, 1190, 1394
BseRI GAGGAG 1 cut(s) 1223
BseSI GKGCMC 1 cut(s) 1145
BseXI GCAGC 2 cut(s) 46, 427
BseYI CCCAGC 1 cut(s) 1407
BsgI GTGCAG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 4 cut(s) 448, 542, 1017, 1285
BshNI GGYRCC 1 cut(s) 1142
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 2 cut(s) 210, 879
BsiSI CCGG 4 cut(s) 42, 354, 1062, 1420
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 1078
BsmFI GGGAC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 4 cut(s) 448, 542, 1017, 1285
Bsp1286I GDGCHC 3 cut(s) 210, 879, 1145
Bsp13I TCCGGA 2 cut(s) 353, 1419
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 5 cut(s) 533, 626, 978, 1155, 1416
Bsp1720I GCTNAGC 1 cut(s) 886
BspACI CCGC 2 cut(s) 724, 1124
BspANI GGCC 4 cut(s) 448, 542, 1017, 1285
BspCNI CTCAG 2 cut(s) 339, 899
BspEI TCCGGA 2 cut(s) 353, 1419
BspLI GGNNCC 3 cut(s) 276, 1144, 1372
BspOI GCTAGC 1 cut(s) 66
BspPI GGATC 4 cut(s) 541, 634, 986, 1411
BspQI GCTCTTC 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 1142
BsrDI GCAATG 5 cut(s) 208, 873, 900, 1374, 1383
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 5 cut(s) 543, 754, 1090, 1190, 1394
BssECI CCNNGG 1 cut(s) 787
BssMI GATC 5 cut(s) 533, 626, 978, 1155, 1416
BssT1I CCWWGG 1 cut(s) 787
Bst4CI ACNGT 3 cut(s) 236, 403, 1162
Bst6I CTCTTC 3 cut(s) 656, 1191, 1293
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstAUI TGTACA 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 64, 133, 199, 1059
BstDEI CTNAG 5 cut(s) 347, 886, 1149, 1292, 1554
BstF5I GGATG 4 cut(s) 783, 803, 861, 1494
BstH2I RGCGCY 2 cut(s) 435, 1095
BstHHI GCGC 3 cut(s) 434, 1094, 1494
BstKTI GATC 5 cut(s) 536, 629, 981, 1158, 1419
BstMAI GTCTC 1 cut(s) 1078
BstMBI GATC 5 cut(s) 533, 626, 978, 1155, 1416
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 6 cut(s) 440, 569, 941, 1100, 1346, 1385
BstNSI RCATGY 2 cut(s) 1103, 1441
BstSFI CTRYAG 2 cut(s) 603, 1108
BstSLI GKGCMC 1 cut(s) 1145
BstV1I GCAGC 2 cut(s) 46, 427
BstV2I GAAGAC 2 cut(s) 962, 1289
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 4 cut(s) 448, 542, 1017, 1285
BtsCI GGATG 4 cut(s) 783, 803, 861, 1494
BtsI GCAGTG 3 cut(s) 666, 825, 1347
BtsIMutI CAGTG 8 cut(s) 399, 536, 666, 825, 1083, 1167, 1197, 1347
Cac8I GCNNGC 4 cut(s) 64, 133, 199, 1059
CfoI GCGC 3 cut(s) 434, 1094, 1494
Cfr13I GGNCC 3 cut(s) 163, 305, 541
Csp6I GTAC 7 cut(s) 229, 334, 708, 893, 1201, 1324, 1362
CviAII CATG 8 cut(s) 158, 290, 655, 1100, 1233, 1356, 1438, 1459
CviQI GTAC 7 cut(s) 229, 334, 708, 893, 1201, 1324, 1362
DdeI CTNAG 5 cut(s) 347, 886, 1149, 1292, 1554
DpnI GATC 5 cut(s) 535, 628, 980, 1157, 1418
DpnII GATC 5 cut(s) 533, 626, 978, 1155, 1416
EaeI YGGCCR 2 cut(s) 446, 1015
Eam1104I CTCTTC 3 cut(s) 656, 1191, 1293
EarI CTCTTC 3 cut(s) 656, 1191, 1293
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 787
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 163, 305
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 208
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 787
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 787
FaeI CATG 8 cut(s) 161, 293, 658, 1103, 1236, 1359, 1441, 1462
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 485
FatI CATG 8 cut(s) 157, 289, 654, 1099, 1232, 1355, 1437, 1458
FauNDI CATATG 1 cut(s) 712
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 5, 8, 60, 441
FokI GGATG 4 cut(s) 770, 810, 868, 1501
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 5, 8, 60, 441
FspAI RTGCGCAY 1 cut(s) 1493
FspBI CTAG 6 cut(s) 63, 167, 362, 524, 774, 863
FspI TGCGCA 1 cut(s) 1493
GlaI GCGC 3 cut(s) 433, 1093, 1493
GluI GCNGC 4 cut(s) 5, 8, 60, 441
GsaI CCCAGC 1 cut(s) 1411
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 2 cut(s) 435, 1095
HaeIII GGCC 4 cut(s) 448, 542, 1017, 1285
HapII CCGG 4 cut(s) 42, 354, 1062, 1420
HhaI GCGC 3 cut(s) 434, 1094, 1494
Hin1II CATG 8 cut(s) 161, 293, 658, 1103, 1236, 1359, 1441, 1462
Hin6I GCGC 3 cut(s) 432, 1092, 1492
HinP1I GCGC 3 cut(s) 432, 1092, 1492
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 2 cut(s) 264, 1024
HpaII CCGG 4 cut(s) 42, 354, 1062, 1420
HphI GGTGA 1 cut(s) 1113
Hpy166II GTNNAC 7 cut(s) 49, 94, 181, 229, 412, 1184, 1443
Hpy188I TCNGA 3 cut(s) 682, 797, 1573
Hpy188III TCNNGA 8 cut(s) 70, 261, 272, 354, 370, 740, 1028, 1420
Hpy8I GTNNAC 7 cut(s) 49, 94, 181, 229, 412, 1184, 1443
HpyAV CCTTC 5 cut(s) 1165, 1439, 1537, 1543, 1552
HpyCH4III ACNGT 3 cut(s) 236, 403, 1162
HpyCH4V TGCA 8 cut(s) 35, 443, 497, 746, 935, 1049, 1349, 1582
HpyF10VI GCNNNNNNNGC 6 cut(s) 440, 569, 941, 1100, 1346, 1385
HpyF3I CTNAG 5 cut(s) 347, 886, 1149, 1292, 1554
Hsp92II CATG 8 cut(s) 161, 293, 658, 1103, 1236, 1359, 1441, 1462
HspAI GCGC 3 cut(s) 432, 1092, 1492
Kpn2I TCCGGA 2 cut(s) 353, 1419
Kzo9I GATC 5 cut(s) 533, 626, 978, 1155, 1416
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 3 cut(s) 274, 941, 953
Lsp1109I GCAGC 2 cut(s) 46, 427
LweI GCATC 3 cut(s) 733, 788, 1479
MaeI CTAG 6 cut(s) 63, 167, 362, 524, 774, 863
MaeIII GTNAC 3 cut(s) 467, 661, 1119
MalI GATC 5 cut(s) 535, 628, 980, 1157, 1418
MboI GATC 5 cut(s) 533, 626, 978, 1155, 1416
MfeI CAATTG 2 cut(s) 936, 1365
MhlI GDGCHC 3 cut(s) 210, 879, 1145
MluCI AATT 8 cut(s) 279, 319, 936, 945, 1005, 1214, 1365, 1527
MmeI TCCRAC 3 cut(s) 367, 833, 1234
MroI TCCGGA 2 cut(s) 353, 1419
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 4 cut(s) 42, 354, 1062, 1420
MunI CAATTG 2 cut(s) 936, 1365
Mva1269I GAATGC 1 cut(s) 1051
MwoI GCNNNNNNNGC 6 cut(s) 440, 569, 941, 1100, 1346, 1385
NdeI CATATG 1 cut(s) 712
NdeII GATC 5 cut(s) 533, 626, 978, 1155, 1416
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 8 cut(s) 161, 293, 658, 1103, 1236, 1359, 1441, 1462
NlaIV GGNNCC 3 cut(s) 276, 1144, 1372
NmeAIII GCCGAG 1 cut(s) 1043
NmuCI GTSAC 2 cut(s) 661, 1119
NsbI TGCGCA 1 cut(s) 1493
NspI RCATGY 2 cut(s) 1103, 1441
PciSI GCTCTTC 1 cut(s) 656
PctI GAATGC 1 cut(s) 1051
PfeI GAWTC 2 cut(s) 264, 1024
PkrI GCNGC 4 cut(s) 6, 9, 61, 442
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 1407
PspN4I GGNNCC 3 cut(s) 276, 1144, 1372
PspPI GGNCC 3 cut(s) 163, 305, 541
PsrI GAACNNNNNNTAC 2 cut(s) 1354, 1386
RsaI GTAC 7 cut(s) 230, 335, 709, 894, 1202, 1325, 1363
RsaNI GTAC 7 cut(s) 229, 334, 708, 893, 1201, 1324, 1362
RseI CAYNNNNRTG 1 cut(s) 659
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 656
SatI GCNGC 4 cut(s) 5, 8, 60, 441
Sau3AI GATC 5 cut(s) 533, 626, 978, 1155, 1416
Sau96I GGNCC 3 cut(s) 163, 305, 541
ScaI AGTACT 1 cut(s) 894
SduI GDGCHC 3 cut(s) 210, 879, 1145
SfaNI GCATC 3 cut(s) 733, 788, 1479
SfcI CTRYAG 2 cut(s) 603, 1108
SinI GGWCC 2 cut(s) 163, 305
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 3 cut(s) 764, 1483, 1538
SmoI CTYRAG 3 cut(s) 764, 1483, 1538
Sse9I AATT 8 cut(s) 279, 319, 936, 945, 1005, 1214, 1365, 1527
SsiI CCGC 2 cut(s) 724, 1124
SspMI CTAG 6 cut(s) 63, 167, 362, 524, 774, 863
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 787
TaaI ACNGT 3 cut(s) 236, 403, 1162
TasI AATT 8 cut(s) 279, 319, 936, 945, 1005, 1214, 1365, 1527
TatI WGTACW 3 cut(s) 707, 892, 1200
TfiI GAWTC 2 cut(s) 264, 1024
TscAI CASTG 8 cut(s) 406, 543, 666, 825, 1090, 1167, 1197, 1347
TseFI GTSAC 2 cut(s) 661, 1119
TseI GCWGC 4 cut(s) 4, 7, 59, 440
Tsp45I GTSAC 2 cut(s) 661, 1119
TspDTI ATGAA 4 cut(s) 146, 643, 834, 1493
TspRI CASTG 8 cut(s) 406, 543, 666, 825, 1090, 1167, 1197, 1347
VpaK11BI GGWCC 2 cut(s) 163, 305
XapI RAATTY 1 cut(s) 1527
XceI RCATGY 2 cut(s) 1103, 1441
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 6 cut(s) 63, 167, 362, 524, 774, 863
ZrmI AGTACT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.