Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002991

Physical Location & Seq

Genomic Coordinates Reverse (-)

4198803 .. 4199144

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTTGTTAAAGGGTCTACTGTGGTGGTCACTGGTCATGGTGTGTCGGTTTTGAAGGTGGTCGAGGAGTTTGAGAAATGGAAGGAGCATGTGAAAGAGAAAAGGTTTAAATTTTGTTTCAAGGCTTATTATGACAAGGTTAGTCAGAGTAGCCGACCTTGCTGCCGTCTGGACCTTCCGAGGTCTAATGGAAAGGTTCCGGAGACACTGAAGTGCATGCCCGGATTGCCACAGGAGTATGGAGACATTCATCAGTTGCAAGTGCATGCTGCCACATCGATGGTTCTAATGATGATAGAGTGTTGGCTTAATTGGTGTTCACTGTACGTCCTTCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0008324 GO:0008519 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0015075 GO:0015101 GO:0015203 GO:0015204 GO:0015291 GO:0015293 GO:0015489 GO:0015606 GO:0015695 GO:0015696 GO:0015840 GO:0015846 GO:0015847 GO:0015848 GO:0016020 GO:0016021 GO:0019755 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034220 GO:0042594 GO:0042886 GO:0042887 GO:0043562 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0071496 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0072488 GO:0098655 GO:1902047 GO:1903711

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSF

Protein Analysis

113

Amino Acids

13.09

Weight (kDa)

8.75

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SEO_C	PF14577	1 - 73	3.7e-13	Sieve element occlusion C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45380
fragaria_vesca	FvH4_5g24140 FvH4_5g24140 FvH4_5g24140 FvH4_5g24140
malus_domestica	MD06G1017300.v1.1
prunus_persica	Prupe.5G019100_v2.0.a1
pyrus_communis	pycom06g01400 pycom06g01410
rosa_chinensis	RchiOBHm_Chr4g0401421 RchiOBHm_Chr4g0401521 RchiOBHm_Chr7g0213721 RchiOBHm_Chr7g0213811
rosa_laevigata	RLG00000002782 RLG00000002785 RLG00000002792 RLG00000009147
rosa_multiflora	Rmu_sc0000328.1_g000016 Rmu_sc0001524.1_g000047 Rmu_sc0002657.1_g000010 Rmu_sc0004549.1_g000018 Rmu_sc0006560.1_g000004
rosa_roxburghii	Rroxscaffold_3G00245690 Rroxscaffold_5G00346150
rosa_rugosa	Rorug04G0029700 Rorug04G0030000 Rorug04G0030100 Rorug07G0144600
rosa_samantha	Rh4AG107000 Rh4AG107300 Rh4AG107900 Rh4CG116200 Rh4DG099100 Rh7BG271000 Rh7DG283200
rosa_wichuraiana	Rw0G009180 Rw4G008720 Rw4G008750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccIII	TCCGGA	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	2 cut(s)	230, 317
AfaI	GTAC	2 cut(s)	326, 338
AgsI	TTSAA	2 cut(s)	55, 121
AleI	CACNNNNGTG	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	197, 237
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	162, 269
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	149, 256
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	197, 237
BfaI	CTAG	1 cut(s)	340
BisI	GCNGC	2 cut(s)	163, 270
BlsI	GCNGC	2 cut(s)	164, 271
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	222
Bsa29I	ATCGAT	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	149, 256
BshVI	ATCGAT	1 cut(s)	278
BsiSI	CCGG	2 cut(s)	200, 222
BsmAI	GTCTC	2 cut(s)	197, 237
Bsp13I	TCCGGA	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	278
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	22, 324
BstC8I	GCNNGC	2 cut(s)	218, 267
BstMAI	GTCTC	2 cut(s)	197, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 226
BstNSI	RCATGY	3 cut(s)	92, 220, 269
BstSCI	CCNGG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	149, 256
BstXI	CCANNNNNNTGG	1 cut(s)	280
Bsu15I	ATCGAT	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	30, 206, 320
Cac8I	GCNNGC	2 cut(s)	218, 267
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	325, 337
CviAII	CATG	4 cut(s)	38, 89, 217, 266
CviJI	RGCY	3 cut(s)	125, 153, 307
CviKI_1	RGCY	3 cut(s)	125, 153, 307
CviQI	GTAC	2 cut(s)	325, 337
DraI	TTTAAA	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	230, 317
FaeI	CATG	4 cut(s)	41, 92, 220, 269
FaiI	YATR	6 cut(s)	39, 90, 132, 218, 240, 267
FatI	CATG	4 cut(s)	37, 88, 216, 265
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	163, 270
Fsp4HI	GCNGC	2 cut(s)	163, 270
FspBI	CTAG	1 cut(s)	340
GluI	GCNGC	2 cut(s)	163, 270
HapII	CCGG	2 cut(s)	200, 222
Hin1II	CATG	4 cut(s)	41, 92, 220, 269
HpaII	CCGG	2 cut(s)	200, 222
Hpy166II	GTNNAC	2 cut(s)	18, 320
Hpy188I	TCNGA	2 cut(s)	147, 180
Hpy188III	TCNNGA	2 cut(s)	170, 200
Hpy8I	GTNNAC	2 cut(s)	18, 320
HpyAV	CCTTC	4 cut(s)	49, 76, 185, 341
HpyCH4III	ACNGT	2 cut(s)	22, 324
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	216, 259, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 226
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	41, 92, 220, 269
Kpn2I	TCCGGA	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	5 cut(s)	18, 155, 213, 218, 235
Lsp1109I	GCAGC	2 cut(s)	149, 256
MaeI	CTAG	1 cut(s)	340
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	28
MluCI	AATT	2 cut(s)	110, 310
MnlI	CCTC	2 cut(s)	58, 174
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	3 cut(s)	9, 108, 309
MslI	CAYNNNNRTG	2 cut(s)	211, 278
MspI	CCGG	2 cut(s)	200, 222
MspR9I	CCNGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	159, 226
NciI	CCSGG	1 cut(s)	222
NlaIII	CATG	4 cut(s)	41, 92, 220, 269
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	3 cut(s)	92, 220, 269
OliI	CACNNNNGTG	1 cut(s)	211
PaeI	GCATGC	2 cut(s)	220, 269
PkrI	GCNGC	2 cut(s)	164, 271
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	326, 338
RsaNI	GTAC	2 cut(s)	325, 337
RseI	CAYNNNNRTG	2 cut(s)	211, 278
SaqAI	TTAA	3 cut(s)	9, 108, 309
SatI	GCNGC	2 cut(s)	163, 270
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	8 cut(s)	60, 107, 141, 160, 177, 185, 198, 330
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	211, 278
SphI	GCATGC	2 cut(s)	220, 269
Sse9I	AATT	2 cut(s)	110, 310
SspMI	CTAG	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	22, 324
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	63, 278
TasI	AATT	2 cut(s)	110, 310
TatI	WGTACW	1 cut(s)	336
Tru1I	TTAA	3 cut(s)	9, 108, 309
Tru9I	TTAA	3 cut(s)	9, 108, 309
TscAI	CASTG	3 cut(s)	37, 213, 327
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	162, 269
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	37, 213, 327
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	3 cut(s)	92, 220, 269
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	340
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.