Rh7DG283200

Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
30728445 .. 30732890
4446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG283200.1

Sequence Viewer

Length: 1722 bp
ATGGCTATAGAGATCAAGAGAAAGGCTCCTCATGCTCACACTGTATGCGAAATTGTAAAAGCTCGCTGGGGCACAGCCGCACATATAGTCTTCCTCAGTTTCTGCTTTTTGACAAATATTATTGTAACGGCAATGCTGCTGCTCGGTGGTTCTGCTGTTGTAAATGCACTTACTGGAGTAAACATCTATGCTGCTAGCTTCCTGATACCTCTTGGAGTAATAGTCTACACTTTAGCTGGAGGTCTAAAAGCCACATTCTTGGCAAGCTATATACATTCTGTTATAGTTCATGTGGTCCTAGTCATATTTGTTTACCTTGTATATACGGCAAGCAATGAGCTCGGTAGCCCTAGAGTTGTGTACGACCGTCTGGTTGAGGTAGCAAGTAAATCAAGAATCTGTCAGGAGCCAATTTCTCATCATGGGCAGTCTTGTGGTCCTGTTGGTGGGAATTACAAAGGGTCGTACCTAACAATGCTGAGTTCCGGAGGGCTAGTGTTCGGGATTATCAACATTGTTGGAAACTTTGGCACTGTTTTTGTTGACAATGGATATTGGGTAAGCGCCATAGCTGCACGGCCATCATCAACTCACAAGGGTTACTTGTTGGGTGGGCTTGTCTGGTTTGCAGTCCCATTCTCTTTGGCAACATCACTAGGTCTGGGATCACTGGCCCTTGACTTACCAATAACAGCAAGTGAAGCAAGTCGTGGTCTTGTTCCTCCTGCCACAGCTATAGCTTTGATGGGAAAAGGAGGATCAGTTCTTCTTCTTACTATGCTCTTCATGGCAGTGACATCTGCTGGTTCTTCAGAGCTTATAGCAGTATCCTCATTATGTACATATGATATCTACCGCACATACATACATCCAGATGCAACTGGAAAGACAATCCTCAAGGTATCTAGGGCTGTCATCCTTGGTTTCGGATGCTTTATGGGGTTGTTAGCAGTGATACTAAACAAGGCAGGAGTTTCATTGGGTTGGATGTATCTAGCAATGGGAGTGCTCATTGGCTCAGCAGTACTCCCCATTGCTTTTATGCTTCTATGGAGAAAGGCAAATGCAATTGGAGCAATTCTGGGAGCAACCATTGGTTGTCTTCTTGGGATCATCACTTGGCTCTCGGTTGCGAAAATTGAGTATGGCCGAGTGAATCTTGACACAACAGGCAGGAATGCACCAATGCTTGCCGGAAACCTTGTCTCTATACTTACTGGTGGCGCTATACATGCTATCTGTAGCTTTGTGTCACCGCAAAACTATGATTGGGGCACCACTAAGCAGATCACAGTGGTTGAGAAGGAAAAGAGTGAACTGCCAGGGGAAGAGTACAAGGAGGAGAAATTATTGAGAGCAAAAGCATGGATAGTGAAATGGGGTGTTGGATTTACTTTTGTGATTGTTTTGTTGTGGCCTCTTCTAAGTCTTCCAGCAGGGGATTTCAGTATAGGGTACTTCACATTCTGGGCAGTGATTGCAATAGCATGGGGTACAATTGGTTCCATTGCCATCATTGCTTTACCAGTATATGAGAGCTGGGAAACGATCCGGAGTGTCCTTCTGGGCATGTTTACAAATGACAGGCTCATGGAAAAGGTTGAAGAAATGAACTTGAGGATGCGCACAATCATGTTGGCTATACCAGAAGCAGAGAGAATTTACTTGCTTGAGAAGGAGAAGGCTAAGAAGGAAGAACCATCAGAGCAAGTGCAACCATAA

Protein Analysis

573

Amino Acids

61.64

Weight (kDa)

8.82

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSF PF00474 12 - 366 6.4e-18 Sodium:solute symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1625
AccB1I GGYRCC 1 cut(s) 1274
AccI GTMKAC 1 cut(s) 225
AccIII TCCGGA 2 cut(s) 485, 1551
AciI CCGC 3 cut(s) 78, 856, 1256
AclWI GGATC 4 cut(s) 673, 766, 1118, 1543
AcoI YGGCCR 2 cut(s) 578, 1147
AcsI RAATTY 1 cut(s) 1659
AcuI CTGAAG 1 cut(s) 795
AfaI GTAC 7 cut(s) 362, 467, 841, 1026, 1334, 1457, 1495
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 1 cut(s) 1604
AjnI CCWGG 1 cut(s) 1321
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
Alw21I GWGCWC 2 cut(s) 342, 1011
Alw26I GTCTC 1 cut(s) 1210
AlwI GGATC 4 cut(s) 673, 766, 1118, 1543
AlwNI CAGNNNCTG 1 cut(s) 102
Aor13HI TCCGGA 2 cut(s) 485, 1551
AoxI GGCC 4 cut(s) 578, 672, 1147, 1415
ApeKI GCWGC 4 cut(s) 136, 139, 191, 572
ApoI RAATTY 1 cut(s) 1659
AspLEI GCGC 3 cut(s) 566, 1226, 1626
AspS9I GGNCC 3 cut(s) 295, 437, 673
AsuHPI GGTGA 1 cut(s) 1245
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 295, 437
BaeGI GKGCMC 2 cut(s) 74, 1277
BanI GGYRCC 1 cut(s) 1274
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 3 cut(s) 82, 1094, 1421
Bbv12I GWGCWC 2 cut(s) 342, 1011
BbvI GCAGC 4 cut(s) 123, 126, 178, 559
BccI CCATC 4 cut(s) 589, 739, 1520, 1708
BceAI ACGGC 3 cut(s) 144, 342, 593
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 1323
BciVI GTATCC 1 cut(s) 838
BcoDI GTCTC 1 cut(s) 1210
BfaI CTAG 7 cut(s) 195, 299, 351, 494, 656, 906, 995
BfmI CTRYAG 3 cut(s) 6, 735, 1240
BfoI RGCGCY 2 cut(s) 567, 1227
BfuI GTATCC 1 cut(s) 838
BisI GCNGC 5 cut(s) 78, 137, 140, 192, 573
BlpI GCTNAGC 1 cut(s) 1018
BlsI GCNGC 5 cut(s) 79, 138, 141, 193, 574
BmcAI AGTACT 1 cut(s) 1026
Bme1390I CCNGG 1 cut(s) 1323
Bme18I GGWCC 2 cut(s) 295, 437
BmgT120I GGNCC 3 cut(s) 295, 437, 673
BmiI GGNNCC 4 cut(s) 27, 408, 1276, 1504
BmrFI CCNGG 1 cut(s) 1323
BmsI GCATC 3 cut(s) 865, 920, 1611
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 3 cut(s) 82, 1094, 1421
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 2 cut(s) 195, 258
Bpu1102I GCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 3 cut(s) 881, 1636, 1691
BsaJI CCNNGG 2 cut(s) 919, 1322
BsaWI WCCGGW 2 cut(s) 485, 1551
BsaXI ACNNNNNCTCC 6 cut(s) 207, 237, 480, 510, 747, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse1I ACTGG 5 cut(s) 178, 675, 886, 1222, 1526
Bse3DI GCAATG 6 cut(s) 138, 340, 1005, 1032, 1506, 1515
BseAI TCCGGA 2 cut(s) 485, 1551
BseBI CCWGG 1 cut(s) 1323
BseDI CCNNGG 2 cut(s) 919, 1322
BseGI GGATG 5 cut(s) 868, 915, 935, 993, 1626
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 6 cut(s) 138, 340, 1005, 1032, 1506, 1515
BseMII CTCAG 3 cut(s) 109, 470, 1032
BseNI ACTGG 5 cut(s) 178, 675, 886, 1222, 1526
BseRI GAGGAG 2 cut(s) 18, 1355
BseSI GKGCMC 2 cut(s) 74, 1277
BseXI GCAGC 4 cut(s) 123, 126, 178, 559
BseYI CCCAGC 2 cut(s) 66, 1539
BsgI GTGCAG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 4 cut(s) 580, 674, 1149, 1417
BshNI GGYRCC 1 cut(s) 1274
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 342, 1011
BsiSI CCGG 3 cut(s) 486, 1194, 1552
BslFI GGGAC 1 cut(s) 617
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 1210
BsmFI GGGAC 1 cut(s) 617
BsmI GAATGC 1 cut(s) 1183
BsnI GGCC 4 cut(s) 580, 674, 1149, 1417
Bsp1286I GDGCHC 4 cut(s) 74, 342, 1011, 1277
Bsp13I TCCGGA 2 cut(s) 485, 1551
Bsp1407I TGTACA 1 cut(s) 839
Bsp143I GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
Bsp1720I GCTNAGC 1 cut(s) 1018
BspACI CCGC 3 cut(s) 78, 856, 1256
BspANI GGCC 4 cut(s) 580, 674, 1149, 1417
BspCNI CTCAG 3 cut(s) 108, 471, 1031
BspEI TCCGGA 2 cut(s) 485, 1551
BspLI GGNNCC 4 cut(s) 27, 408, 1276, 1504
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 4 cut(s) 673, 766, 1118, 1543
BspQI GCTCTTC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 1274
BsrDI GCAATG 6 cut(s) 138, 340, 1005, 1032, 1506, 1515
BsrGI TGTACA 1 cut(s) 839
BsrI ACTGG 5 cut(s) 178, 675, 886, 1222, 1526
BssECI CCNNGG 2 cut(s) 919, 1322
BssMI GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
BssT1I CCWWGG 1 cut(s) 919
Bst2UI CCWGG 1 cut(s) 1323
Bst4CI ACNGT 4 cut(s) 43, 368, 535, 1294
Bst6I CTCTTC 3 cut(s) 788, 1323, 1425
BstAPI GCANNNNNTGC 1 cut(s) 1478
BstAUI TGTACA 1 cut(s) 839
BstC8I GCNNGC 5 cut(s) 64, 196, 265, 331, 1191
BstDEI CTNAG 6 cut(s) 95, 479, 1018, 1281, 1424, 1686
BstF5I GGATG 5 cut(s) 868, 915, 935, 993, 1626
BstH2I RGCGCY 2 cut(s) 567, 1227
BstHHI GCGC 3 cut(s) 566, 1226, 1626
BstKTI GATC 6 cut(s) 15, 668, 761, 1113, 1290, 1551
BstMAI GTCTC 1 cut(s) 1210
BstMBI GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 7 cut(s) 32, 572, 701, 1073, 1232, 1478, 1517
BstNI CCWGG 1 cut(s) 1323
BstNSI RCATGY 2 cut(s) 1235, 1573
BstSCI CCNGG 1 cut(s) 1321
BstSFI CTRYAG 3 cut(s) 6, 735, 1240
BstSLI GKGCMC 2 cut(s) 74, 1277
BstV1I GCAGC 4 cut(s) 123, 126, 178, 559
BstV2I GAAGAC 3 cut(s) 82, 1094, 1421
BstXI CCANNNNNNTGG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 838
BsuRI GGCC 4 cut(s) 580, 674, 1149, 1417
BtsCI GGATG 5 cut(s) 868, 915, 935, 993, 1626
BtsI GCAGTG 3 cut(s) 798, 957, 1479
BtsIMutI CAGTG 7 cut(s) 39, 531, 668, 798, 957, 1299, 1479
Cac8I GCNNGC 5 cut(s) 64, 196, 265, 331, 1191
CaiI CAGNNNCTG 1 cut(s) 102
CfoI GCGC 3 cut(s) 566, 1226, 1626
Cfr13I GGNCC 3 cut(s) 295, 437, 673
Csp6I GTAC 7 cut(s) 361, 466, 840, 1025, 1333, 1456, 1494
CviQI GTAC 7 cut(s) 361, 466, 840, 1025, 1333, 1456, 1494
DdeI CTNAG 6 cut(s) 95, 479, 1018, 1281, 1424, 1686
DpnI GATC 6 cut(s) 14, 667, 760, 1112, 1289, 1550
DpnII GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
EaeI YGGCCR 2 cut(s) 578, 1147
Eam1104I CTCTTC 3 cut(s) 788, 1323, 1425
EarI CTCTTC 3 cut(s) 788, 1323, 1425
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 2 cut(s) 295, 437
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 795
EcoICRI GAGCTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 1321
EcoRV GATATC 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 919
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 919
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 617
FauNDI CATATG 1 cut(s) 844
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 78, 137, 140, 192, 573
FokI GGATG 5 cut(s) 855, 902, 942, 1000, 1633
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 5 cut(s) 78, 137, 140, 192, 573
FspAI RTGCGCAY 1 cut(s) 1625
FspBI CTAG 7 cut(s) 195, 299, 351, 494, 656, 906, 995
FspI TGCGCA 1 cut(s) 1625
GlaI GCGC 3 cut(s) 565, 1225, 1625
GluI GCNGC 5 cut(s) 78, 137, 140, 192, 573
GsaI CCCAGC 2 cut(s) 70, 1543
GsuI CTGGAG 2 cut(s) 195, 258
HaeII RGCGCY 2 cut(s) 567, 1227
HaeIII GGCC 4 cut(s) 580, 674, 1149, 1417
HapII CCGG 3 cut(s) 486, 1194, 1552
HhaI GCGC 3 cut(s) 566, 1226, 1626
Hin6I GCGC 3 cut(s) 564, 1224, 1624
HinP1I GCGC 3 cut(s) 564, 1224, 1624
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 2 cut(s) 396, 1156
HpaII CCGG 3 cut(s) 486, 1194, 1552
HphI GGTGA 1 cut(s) 1245
Hpy166II GTNNAC 7 cut(s) 181, 226, 313, 361, 544, 1316, 1575
Hpy188I TCNGA 3 cut(s) 814, 929, 1705
Hpy188III TCNNGA 9 cut(s) 16, 202, 393, 404, 486, 502, 872, 1160, 1552
Hpy8I GTNNAC 7 cut(s) 181, 226, 313, 361, 544, 1316, 1575
HpyAV CCTTC 5 cut(s) 1297, 1571, 1669, 1675, 1684
HpyCH4III ACNGT 4 cut(s) 43, 368, 535, 1294
HpyCH4V TGCA 8 cut(s) 167, 575, 629, 878, 1067, 1181, 1481, 1714
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 572, 701, 1073, 1232, 1478, 1517
HpyF3I CTNAG 6 cut(s) 95, 479, 1018, 1281, 1424, 1686
HspAI GCGC 3 cut(s) 564, 1224, 1624
Kpn2I TCCGGA 2 cut(s) 485, 1551
Kzo9I GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 4 cut(s) 31, 406, 1073, 1085
Lsp1109I GCAGC 4 cut(s) 123, 126, 178, 559
LweI GCATC 3 cut(s) 865, 920, 1611
MaeI CTAG 7 cut(s) 195, 299, 351, 494, 656, 906, 995
MaeIII GTNAC 4 cut(s) 124, 599, 793, 1251
MalI GATC 6 cut(s) 14, 667, 760, 1112, 1289, 1550
MboI GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
MfeI CAATTG 2 cut(s) 1068, 1497
MhlI GDGCHC 4 cut(s) 74, 342, 1011, 1277
MluCI AATT 9 cut(s) 51, 411, 451, 1068, 1077, 1137, 1346, 1497, 1659
MmeI TCCRAC 3 cut(s) 499, 965, 1366
MroI TCCGGA 2 cut(s) 485, 1551
MslI CAYNNNNRTG 3 cut(s) 791, 873, 1631
MspI CCGG 3 cut(s) 486, 1194, 1552
MspR9I CCNGG 1 cut(s) 1323
MunI CAATTG 2 cut(s) 1068, 1497
Mva1269I GAATGC 1 cut(s) 1183
MvaI CCWGG 1 cut(s) 1323
MwoI GCNNNNNNNGC 7 cut(s) 32, 572, 701, 1073, 1232, 1478, 1517
NdeI CATATG 1 cut(s) 844
NdeII GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 4 cut(s) 27, 408, 1276, 1504
NmeAIII GCCGAG 1 cut(s) 1175
NmuCI GTSAC 2 cut(s) 793, 1251
NsbI TGCGCA 1 cut(s) 1625
NspI RCATGY 2 cut(s) 1235, 1573
PciSI GCTCTTC 1 cut(s) 788
PctI GAATGC 1 cut(s) 1183
PfeI GAWTC 2 cut(s) 396, 1156
PkrI GCNGC 5 cut(s) 79, 138, 141, 193, 574
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 1321
PspFI CCCAGC 2 cut(s) 66, 1539
PspGI CCWGG 1 cut(s) 1321
PspN4I GGNNCC 4 cut(s) 27, 408, 1276, 1504
PspPI GGNCC 3 cut(s) 295, 437, 673
PsrI GAACNNNNNNTAC 2 cut(s) 1486, 1518
PstNI CAGNNNCTG 1 cut(s) 102
RsaI GTAC 7 cut(s) 362, 467, 841, 1026, 1334, 1457, 1495
RsaNI GTAC 7 cut(s) 361, 466, 840, 1025, 1333, 1456, 1494
RseI CAYNNNNRTG 3 cut(s) 791, 873, 1631
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 788
SatI GCNGC 5 cut(s) 78, 137, 140, 192, 573
Sau3AI GATC 6 cut(s) 12, 665, 758, 1110, 1287, 1548
Sau96I GGNCC 3 cut(s) 295, 437, 673
ScaI AGTACT 1 cut(s) 1026
ScrFI CCNGG 1 cut(s) 1323
SduI GDGCHC 4 cut(s) 74, 342, 1011, 1277
SfaNI GCATC 3 cut(s) 865, 920, 1611
SfcI CTRYAG 3 cut(s) 6, 735, 1240
SinI GGWCC 2 cut(s) 295, 437
SmiMI CAYNNNNRTG 3 cut(s) 791, 873, 1631
SmlI CTYRAG 3 cut(s) 896, 1615, 1670
SmoI CTYRAG 3 cut(s) 896, 1615, 1670
Sse9I AATT 9 cut(s) 51, 411, 451, 1068, 1077, 1137, 1346, 1497, 1659
SsiI CCGC 3 cut(s) 78, 856, 1256
SspI AATATT 1 cut(s) 118
SspMI CTAG 7 cut(s) 195, 299, 351, 494, 656, 906, 995
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 1321
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 4 cut(s) 43, 368, 535, 1294
TasI AATT 9 cut(s) 51, 411, 451, 1068, 1077, 1137, 1346, 1497, 1659
TatI WGTACW 3 cut(s) 839, 1024, 1332
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 396, 1156
TscAI CASTG 7 cut(s) 46, 538, 675, 798, 957, 1299, 1479
TseFI GTSAC 2 cut(s) 793, 1251
TseI GCWGC 4 cut(s) 136, 139, 191, 572
Tsp45I GTSAC 2 cut(s) 793, 1251
TspDTI ATGAA 4 cut(s) 278, 775, 966, 1625
TspRI CASTG 7 cut(s) 46, 538, 675, 798, 957, 1299, 1479
VpaK11BI GGWCC 2 cut(s) 295, 437
XapI RAATTY 1 cut(s) 1659
XceI RCATGY 2 cut(s) 1235, 1573
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 7 cut(s) 195, 299, 351, 494, 656, 906, 995
ZrmI AGTACT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.