Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011984

Physical Location & Seq

Genomic Coordinates Reverse (-)

7286074 .. 7287006

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAGACCCTCGCAAAGGGAAGGAAGAGAAGGCAGGCATGGAAGAAGTGCGTTATCGGGGCGTTCGGAGGAGGCCATGGGGGAAGTTTGCGTCGGAGATAAGAGACCCTTCGAGGCAGGGTGCTCGTCAGTGGCTTGGTACATTCGACACAGCAGAGGAAGCTGCAAGGGCTTACGATAAGGCTGCTTTTAACCTAAGGGGCCATCTTGCCATACTCAACTTCCCCAATGAGTACTATTCTCGAGTCATGGGATCTCCTCCTTATCCTCCGAGATTCCAATCATCCGTTTCTTCTTCATCGTCTTCTTCTGCTTCGGCTGCAGCTACTGCTAGTAGAGGAGCTGGTGGGAGCTTTGAGAGTGGAAGCAGCAGCTCCTCTGCTGGACAAGGAAGGCAAGTGTTTGAGTTCGAGTATTTGGATGACAAGGTGTTGGAGGATCTTCTTGATTGGGAAGAGGAGAAACGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004143 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0044237 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055044 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

DAGK_acc DAGK_cat

Protein Analysis

157

Amino Acids

17.49

Weight (kDa)

6.63

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	18 - 69	2.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18730 AT4G30340 AT4G30340 AT5G57690
fragaria_vesca	FvH4_4g08400 FvH4_4g08400
malus_domestica	MD13G1262800.v1.1 MD16G1264500.v1.1
prunus_persica	Prupe.1G094900_v2.0.a1
pyrus_communis	pycom13g24340 pycom16g23310
rosa_chinensis	RchiOBHm_Chr4g0404101
rosa_laevigata	RLG00000008925
rosa_multiflora	Rmu_sc0006579.1_g000001
rosa_roxburghii	Rroxscaffold_5G00348640
rosa_rugosa	Rorug04G0046900 Rorug04G0047000
rosa_samantha	Rh4DG115900
rosa_wichuraiana	Rw4G009980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	262, 447
AfaI	GTAC	2 cut(s)	142, 236
AfiI	CCNNNNNNNGG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	164, 326, 344, 354, 375
AluI	AGCT	5 cut(s)	164, 326, 344, 354, 375
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	262, 447
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	74, 202
ApeKI	GCWGC	6 cut(s)	164, 185, 320, 323, 369, 372
AspS9I	GGNCC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	12, 297
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	6 cut(s)	151, 172, 307, 335, 381, 384
BccI	CCATC	1 cut(s)	213
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 167, 201
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	6 cut(s)	165, 186, 321, 324, 370, 373
BlsI	GCNGC	6 cut(s)	166, 187, 322, 325, 371, 374
BmcAI	AGTACT	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	12, 297
BsaBI	GATNNNNATC	1 cut(s)	280
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	284, 427
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseRI	GAGGAG	5 cut(s)	85, 249, 354, 367, 473
BseXI	GCAGC	6 cut(s)	151, 172, 307, 335, 381, 384
BshFI	GGCC	2 cut(s)	76, 204
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	76, 204
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	254, 439
Bsp19I	CCATGG	1 cut(s)	77
BspANI	GGCC	2 cut(s)	76, 204
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	262, 447
BspTNI	GGTCTC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	254, 439
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	21, 450
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	284, 427
BstKTI	GATC	2 cut(s)	257, 442
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	254, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	6 cut(s)	151, 172, 307, 335, 381, 384
BstV2I	GAAGAC	2 cut(s)	12, 297
BstX2I	RGATCY	2 cut(s)	254, 439
BstYI	RGATCY	2 cut(s)	254, 439
Bsu36I	CCTNAGG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	76, 204
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	284, 427
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	141, 235
CviAII	CATG	3 cut(s)	40, 78, 250
CviQI	GTAC	2 cut(s)	141, 235
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	256, 441
DpnII	GATC	2 cut(s)	254, 439
Eam1104I	CTCTTC	2 cut(s)	21, 450
EarI	CTCTTC	2 cut(s)	21, 450
Eco130I	CCWWGG	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	3 cut(s)	43, 81, 253
FaiI	YATR	4 cut(s)	41, 79, 215, 251
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	3 cut(s)	39, 77, 249
Fnu4HI	GCNGC	6 cut(s)	165, 186, 321, 324, 370, 373
FokI	GGATG	2 cut(s)	271, 434
Fsp4HI	GCNGC	6 cut(s)	165, 186, 321, 324, 370, 373
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	6 cut(s)	165, 186, 321, 324, 370, 373
HaeIII	GGCC	2 cut(s)	76, 204
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	43, 81, 253
HinfI	GANTC	2 cut(s)	246, 276
Hpy188I	TCNGA	3 cut(s)	69, 97, 273
Hpy188III	TCNNGA	2 cut(s)	243, 446
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	16, 25, 120, 387
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	167, 323
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	3 cut(s)	43, 81, 253
Kzo9I	GATC	2 cut(s)	254, 439
LmnI	GCTCC	3 cut(s)	341, 351, 380
LpnPI	CCDG	4 cut(s)	21, 104, 330, 369
Lsp1109I	GCAGC	6 cut(s)	151, 172, 307, 335, 381, 384
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	466
MalI	GATC	2 cut(s)	256, 441
MboI	GATC	2 cut(s)	254, 439
MboII	GAAGA	9 cut(s)	17, 38, 56, 285, 288, 297, 300, 434, 467
MflI	RGATCY	2 cut(s)	254, 439
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	75, 414
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 320, 329
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	2 cut(s)	254, 439
NlaIII	CATG	3 cut(s)	43, 81, 253
NlaIV	GGNNCC	1 cut(s)	203
PaeR7I	CTCGAG	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	166, 187, 322, 325, 371, 374
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	254, 439
RsaI	GTAC	2 cut(s)	142, 236
RsaNI	GTAC	2 cut(s)	141, 235
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	6 cut(s)	165, 186, 321, 324, 370, 373
Sau3AI	GATC	2 cut(s)	254, 439
Sau96I	GGNCC	1 cut(s)	202
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	8 cut(s)	166, 198, 328, 346, 356, 377, 432, 469
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SspMI	CTAG	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	77
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	4 cut(s)	113, 147, 244, 411
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	6 cut(s)	164, 185, 320, 323, 369, 372
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	15
XhoI	CTCGAG	1 cut(s)	243
XspI	CTAG	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.