Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014140

Physical Location & Seq

Genomic Coordinates Forward (+)

8945722 .. 8946617

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAAATCATCAACAGCATTCTCCTCATATGTGGCCTCGCATTCTTCGTGATCTTTATGTCTCTGTTGGAACCCCAGAACTTGCTGGGCACTGAATATGACGTTCGAGTCATCAACGGCTTCACAAACAACTCGTCCCTGCCGCTGGTCATCTGGTGTTCATCGAAAGAGAATGATCTCGGTGGACGTGCGCTACAGGAGAAGGATGACTTCAGTTGGAGGCTGAGGACCAACTTCTGGGGCACGAGTAACCATTTCGTTTGCACGATGAAATGGGACAAAAAGCGGAAGCGCTTCGACGCCTTCAAGATTCCGAGAGACGTTCAACGGTGTGGTCCTTTCCGGAAGTGCTCATGGCTGGTGAGGGAGGATGGGTTTTATTTCAGCAACGATGAAGTAAACTGGAAAAAGGACTTTTCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004713 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009987 GO:0010150 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.72

Weight (kDa)

9.06

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	35 - 141	9.3e-26	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23950 AT4G30520
fragaria_vesca	FvH4_4g08870 FvH4_4g08870
malus_domestica	MD16G1259200.v1.1
prunus_persica	Prupe.1G100800_v2.0.a1
pyrus_communis	pycom16g22670
rosa_chinensis	RchiOBHm_Chr4g0405301
rosa_laevigata	RLG00000008859
rosa_multiflora	Rmu_sc0000161.1_g000017
rosa_roxburghii	Rroxscaffold_5G00349670
rosa_rugosa	Rorug04G0057100 Rorug04G0057200
rosa_samantha	Rh4AG130600 Rh4CG137500 Rh4DG124000
rosa_wichuraiana	Rw4G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	2 cut(s)	143, 286
AcuI	CTGAAG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	145, 237
AgsI	TTSAA	2 cut(s)	307, 326
AjiI	CACGTC	1 cut(s)	188
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	66, 312
Aor13HI	TCCGGA	1 cut(s)	342
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	1 cut(s)	34
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	2 cut(s)	193, 294
AspS9I	GGNCC	2 cut(s)	228, 335
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	228, 335
BaeGI	GKGCMC	2 cut(s)	92, 245
BauI	CACGAG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	353
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	66, 312
BfmI	CTRYAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	228, 335
BmgBI	CACGTC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	228, 335
BmiI	GGNNCC	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 237
Bse1I	ACTGG	1 cut(s)	407
BseAI	TCCGGA	1 cut(s)	342
BseGI	GGATG	2 cut(s)	211, 376
BseLI	CCNNNNNNNGG	2 cut(s)	145, 237
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	2 cut(s)	92, 245
BseYI	CCCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	2 cut(s)	121, 290
BslI	CCNNNNNNNGG	2 cut(s)	145, 237
BsmAI	GTCTC	2 cut(s)	66, 312
BsmBI	CGTCTC	1 cut(s)	312
BsmFI	GGGAC	2 cut(s)	121, 290
BsmI	GAATGC	2 cut(s)	18, 41
BsnI	GGCC	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	92, 245, 353
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	51, 175
BspACI	CCGC	2 cut(s)	143, 286
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	216
BspEI	TCCGGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	407
BssMI	GATC	2 cut(s)	51, 175
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	300
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	211, 376
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	193, 294
BstKTI	GATC	2 cut(s)	54, 178
BstMAI	GTCTC	2 cut(s)	66, 312
BstMBI	GATC	2 cut(s)	51, 175
BstSFI	CTRYAG	1 cut(s)	194
BstSLI	GKGCMC	2 cut(s)	92, 245
BsuRI	GGCC	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	211, 376
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	2 cut(s)	193, 294
Cfr13I	GGNCC	2 cut(s)	228, 335
CseI	GACGC	1 cut(s)	308
CviAII	CATG	2 cut(s)	354, 420
CviJI	RGCY	4 cut(s)	36, 120, 223, 358
CviKI_1	RGCY	4 cut(s)	36, 120, 223, 358
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	2 cut(s)	53, 177
DpnII	GATC	2 cut(s)	51, 175
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	228, 335
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	2 cut(s)	357, 423
FaiI	YATR	6 cut(s)	29, 31, 59, 99, 355, 421
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	2 cut(s)	121, 290
FatI	CATG	2 cut(s)	353, 419
FauNDI	CATATG	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	218, 383
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	2 cut(s)	192, 293
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	193, 294
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	357, 423
Hin6I	GCGC	2 cut(s)	191, 292
HinP1I	GCGC	2 cut(s)	191, 292
HinfI	GANTC	2 cut(s)	108, 310
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	185, 400
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	49, 307, 343
Hpy8I	GTNNAC	2 cut(s)	185, 400
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	196, 313
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	3 cut(s)	102, 187, 321
HpyCH4V	TGCA	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	3 cut(s)	102, 187, 321
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	357, 423
HspAI	GCGC	2 cut(s)	191, 292
Kpn2I	TCCGGA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	51, 175
MaeII	ACGT	3 cut(s)	102, 187, 321
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	53, 177
MboI	GATC	2 cut(s)	51, 175
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	92, 245, 353
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	2 cut(s)	48, 197
MnlI	CCTC	6 cut(s)	35, 47, 213, 219, 357, 361
MroI	TCCGGA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	343
Mva1269I	GAATGC	2 cut(s)	18, 41
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	2 cut(s)	51, 175
NlaIII	CATG	2 cut(s)	357, 423
NlaIV	GGNNCC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	2 cut(s)	18, 41
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	228, 335
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	51, 175
Sau96I	GGNCC	2 cut(s)	228, 335
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	3 cut(s)	92, 245, 353
SetI	ASST	3 cut(s)	105, 190, 324
SfcI	CTRYAG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	228, 335
SsiI	CCGC	2 cut(s)	143, 286
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	3 cut(s)	105, 190, 324
TaqI	TCGA	3 cut(s)	106, 164, 297
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	17, 150, 284, 408, 408
TspRI	CASTG	1 cut(s)	97
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	228, 335
XmnI	GAANNNNTTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.