Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005119

Physical Location & Seq

Genomic Coordinates Reverse (-)

41373185 .. 41374895

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTTCCAGTTTCAGAAACACATAACACAGAGGTGGAGAAAAGTAGCAAGACCTTTCGGATATCTCAGCAAGAAATAACCCGAGCTTATCGAGGATTGTCATGGGCAGTAACAGTCAATGCAAATGCGTGGACCAATTCGGGGCATGCTGTGAACCAAATATATTACCTCCTTTACATGATGGGACGCGATGATGTTGCTGTTGGAGTTGGAGGTGAGGGAGGTATTAGGGGACTACAACAGCGGGAGGATGCAGATATAGACAAGCTATTCCTACAGGACTTGGAGGGGAGCAGGAGATATAGTCCATTTCGACAACCTGCTGCTCAACAAGTGATGATTGACAAAATATCTGCAGGTCCCAAAATAACTGTGTTTGTTATAGGAGCACATACAAACTTTGCCATATTCCTTATGAATAATCCACACTTGAAGAAGAATGTTGAGCATATTTATGTGATGGGGGTTGGTGTGAGATCAAAGAACCCGACTGGTGGTTGCCCCAAAAATGCTACCCCGACTTGTGTGTCTGAGCAATGTGGTGATCCTAGTAACTTGTTCACCGACTATACCAGTAATCCTTATGCAGACTTCAATATCTATGGAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

204

Amino Acids

22.6

Weight (kDa)

6.51

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IU_nuc_hydro	PF01156	37 - 203	3.8e-13	Inosine-uridine preferring nucleoside hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67420 AT1G67420 AT1G67420 AT1G67420 AT1G67420 AT1G67420
fragaria_vesca	FvH4_4g23910 FvH4_4g23910 FvH4_4g23910 FvH4_4g23910 FvH4_4g23910 FvH4_4g23910
malus_domestica	MD13G1117700.v1.1 MD16G1117900.v1.1
prunus_persica	Prupe.1G227300_v2.0.a1 Prupe.1G227300_v2.0.a1 Prupe.1G227300_v2.0.a1
pyrus_communis	pycom13g10180 pycom16g10100
rosa_chinensis	RchiOBHm_Chr4g0430551
rosa_laevigata	RLG00000006970
rosa_multiflora	Rmu_sc0011782.1_g000005
rosa_roxburghii	Rroxscaffold_5G00372320
rosa_rugosa	Rorug04G0244100 Rorug04G0244200
rosa_samantha	Rh4AG300200 Rh4BG307300 Rh4CG324000 Rh4DG304600
rosa_wichuraiana	Rw4G026050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
Acc36I	ACCTGC	2 cut(s)	328, 347
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	141, 494
AgsI	TTSAA	2 cut(s)	433, 595
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	86, 268
AluI	AGCT	2 cut(s)	86, 268
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	132, 359
AsuHPI	GGTGA	3 cut(s)	227, 553, 554
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	132, 359
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	175, 454
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	275, 354
BfuAI	ACCTGC	2 cut(s)	328, 347
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme18I	GGWCC	2 cut(s)	132, 359
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	132, 359
BmiI	GGNNCC	2 cut(s)	6, 361
BmsI	GCATC	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 494
Bse1I	ACTGG	3 cut(s)	8, 496, 573
Bse3DI	GCAATG	1 cut(s)	542
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	141, 494
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	80, 522
BseNI	ACTGG	3 cut(s)	8, 496, 573
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	81
BslFI	GGGAC	3 cut(s)	198, 246, 345
BslI	CCNNNNNNNGG	2 cut(s)	141, 494
BsmAI	GTCTC	1 cut(s)	600
BsmFI	GGGAC	3 cut(s)	198, 246, 345
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	476, 544
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	79, 523
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	6, 361
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	2 cut(s)	328, 347
BspPI	GGATC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	8, 496, 573
BssMI	GATC	2 cut(s)	476, 544
Bst4CI	ACNGT	2 cut(s)	115, 373
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	66, 531
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	479, 547
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	2 cut(s)	476, 544
BstNSI	RCATGY	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	275, 354
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	256
BveI	ACCTGC	2 cut(s)	328, 347
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	132, 359
CseI	GACGC	1 cut(s)	195
CviAII	CATG	3 cut(s)	102, 146, 178
CviJI	RGCY	2 cut(s)	86, 268
CviKI_1	RGCY	2 cut(s)	86, 268
DdeI	CTNAG	2 cut(s)	66, 531
DpnI	GATC	2 cut(s)	478, 546
DpnII	GATC	2 cut(s)	476, 544
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	132, 359
Eco88I	CYCGRG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	63
FaeI	CATG	3 cut(s)	105, 149, 181
FaqI	GGGAC	3 cut(s)	198, 246, 345
FatI	CATG	3 cut(s)	101, 145, 177
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	1 cut(s)	324
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	105, 149, 181
HphI	GGTGA	3 cut(s)	227, 553, 554
Hpy166II	GTNNAC	3 cut(s)	132, 154, 561
Hpy188I	TCNGA	3 cut(s)	16, 60, 532
Hpy8I	GTNNAC	3 cut(s)	132, 154, 561
HpyCH4III	ACNGT	2 cut(s)	115, 373
HpyCH4V	TGCA	4 cut(s)	122, 254, 356, 587
HpyF3I	CTNAG	2 cut(s)	66, 531
Hsp92II	CATG	3 cut(s)	105, 149, 181
Kzo9I	GATC	2 cut(s)	476, 544
LmnI	GCTCC	2 cut(s)	291, 386
LpnPI	CCDG	7 cut(s)	21, 263, 280, 333, 342, 477, 586
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	109, 551
MalI	GATC	2 cut(s)	478, 546
MboI	GATC	2 cut(s)	476, 544
MboII	GAAGA	2 cut(s)	445, 448
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	184, 190
MnlI	CCTC	8 cut(s)	25, 86, 179, 206, 211, 215, 241, 280
MslI	CAYNNNNRTG	2 cut(s)	32, 453
MspA1I	CMGCKG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	189
NdeII	GATC	2 cut(s)	476, 544
NlaIII	CATG	3 cut(s)	105, 149, 181
NlaIV	GGNNCC	2 cut(s)	6, 361
NspI	RCATGY	1 cut(s)	149
OliI	CACNNNNGTG	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	6, 361
PspPI	GGNCC	2 cut(s)	132, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	32, 453
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	476, 544
Sau96I	GGNCC	2 cut(s)	132, 359
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	9 cut(s)	36, 56, 88, 171, 217, 226, 270, 322, 361
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	275, 354
SinI	GGWCC	2 cut(s)	132, 359
SmiMI	CAYNNNNRTG	2 cut(s)	32, 453
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	115, 373
TaqI	TCGA	2 cut(s)	91, 313
TasI	AATT	1 cut(s)	136
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	132, 359
XceI	RCATGY	1 cut(s)	149
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.