Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005049

Physical Location & Seq

Genomic Coordinates Forward (+)

59420040 .. 59422689

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0436800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCCGATTGGGAGTTCATTTCCGAGGAGCACGAACGATGCGGAGCTAGATGCCCATAACTGGGGAGTTGTCACAACAAAACATCGAAGATCGTTGTTGATTTCGACTGAAATTATAGAGCGGAAATTCATAATAGAAATTTGGTCTCGTTTTTCCAATTATGAAGTGATCCTACTCACATTGGACCTAGTGCCCAGGTGGTTTGGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

70

Amino Acids

8.2

Weight (kDa)

6.72

Isoelectric Point (pI)

72.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58950
fragaria_vesca	FvH4_3g09060 FvH4_3g09060 FvH4_3g09060
malus_domestica	MD05G1338300.v1.1 MD10G1293400.v1.1
prunus_persica	Prupe.4G048400_v2.0.a1 Prupe.4G048400_v2.0.a1
pyrus_communis	pycom05g28970 pycom10g24540
rosa_chinensis	RchiOBHm_Chr3g0452421 RchiOBHm_Chr5g0008571
rosa_laevigata	RLG00000025604 RLG00000031584
rosa_multiflora	Rmu_co8323009.1_g000001 Rmu_sc0001665.1_g000020 Rmu_sc0011680.1_g000010
rosa_roxburghii	Rroxscaffold_1G00067970 Rroxscaffold_6G00429440
rosa_rugosa	Rorug04G0436800 Rorug04G0436900
rosa_samantha	Rh2BG387100 Rh3BG044100 Rh3DG043600 Rh5AG065600 Rh5BG063100 Rh5CG073300 Rh5DG063100
rosa_wichuraiana	Rw3G003270 Rw5G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	2 cut(s)	41, 121
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	125, 138
AfiI	CCNNNNNNNGG	2 cut(s)	60, 61
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	125, 138
AspS9I	GGNCC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	207
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
Bbv12I	GWGCWC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	2 cut(s)	47, 188
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	196
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	28, 40
BmuI	ACTGGG	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	23, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 61
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	23, 194
BseLI	CCNNNNNNNGG	2 cut(s)	60, 61
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	60, 61
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	32, 195
Bsp143I	GATC	2 cut(s)	89, 168
BspACI	CCGC	2 cut(s)	41, 121
BspANI	GGCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	23, 194
BssMI	GATC	2 cut(s)	89, 168
Bst2UI	CCWGG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	92, 171
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	89, 168
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	184
CviJI	RGCY	2 cut(s)	46, 207
CviKI_1	RGCY	2 cut(s)	46, 207
DpnI	GATC	2 cut(s)	91, 170
DpnII	GATC	2 cut(s)	89, 168
EaeI	YGGCCR	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	194
FaiI	YATR	4 cut(s)	57, 116, 131, 162
FspBI	CTAG	2 cut(s)	47, 188
HaeIII	GGCC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	89, 168
LmnI	GCTCC	2 cut(s)	27, 43
LpnPI	CCDG	3 cut(s)	46, 181, 208
LweI	GCATC	2 cut(s)	28, 40
MaeI	CTAG	2 cut(s)	47, 188
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	2 cut(s)	91, 170
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	2 cut(s)	89, 168
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	32, 195
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	111, 125, 138, 157
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	1 cut(s)	18
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	89, 168
NmuCI	GTSAC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	184
Sau3AI	GATC	2 cut(s)	89, 168
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	32, 195
SetI	ASST	3 cut(s)	48, 189, 200
SfaNI	GCATC	2 cut(s)	28, 40
SgeI	CNNG	8 cut(s)	36, 43, 59, 73, 159, 200, 207, 208
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	4 cut(s)	111, 125, 138, 157
SsiI	CCGC	2 cut(s)	41, 121
SspMI	CTAG	2 cut(s)	47, 188
StyD4I	CCNGG	1 cut(s)	194
TaqI	TCGA	2 cut(s)	85, 104
TasI	AATT	4 cut(s)	111, 125, 138, 157
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	6, 118, 177
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	125, 138
XspI	CTAG	2 cut(s)	47, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.